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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6ELZ

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1125S ribosomal RNApolymer33961097493.91GenBank (834774822)Saccharomyces cerevisiae S288c (Baker's yeast)RDN25-1
225.8S ribosomal RNApolymer15850682.91GenBank (1214879358)Saccharomyces cerevisiae S288c (Baker's yeast)RDN581-1
36Internal transcribed spacer 2polymer23274308.41GenBank (1102641490)Saccharomyces cerevisiae S288c (Baker's yeast)ITS2-1
4L60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL13-A
5N60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
6Q60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
7R60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
8S60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
9T60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL21-A
10U60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
11Z60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL27-A
12c60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
13d60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
14e60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL32
15f60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
16g60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL34-A
17i60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
18j60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
19k60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL38
20O60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
21V60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
22a60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
23P60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
24X60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
25Y60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
26h60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein uL29-A
27F60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF00327)
Pfam (PF08079)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
28B60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
29C60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
30H60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
31ARibosome biogenesis protein BRX1polymer29133585.41UniProt (Q08235)
Pfam (PF04427)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)
32KProteasome-interacting protein CIC1polymer37642596.71UniProt (P38779)
Pfam (PF00687)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Core interacting component 1
33mRibosome biogenesis protein ERB1polymer80791830.61UniProt (Q04660)
Pfam (PF08145)
Pfam (PF00400)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Eukaryotic ribosome biogenesis protein 1
34DATP-dependent RNA helicase HAS1polymer50556798.31UniProt (Q03532)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF13959)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Helicase associated with SET1 protein 1
35WRibosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)mRNA turnover protein 4
36l60S ribosome subunit biogenesis protein NIP7polymer18120411.71UniProt (Q08962)
Pfam (PF17833)
Pfam (PF03657)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Nuclear import protein 7
37bNucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)
38oRibosome biogenesis protein 15polymer22025499.21UniProt (P53927)
Pfam (PF00076)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Nucleolar protein 15
39nPescadillo homologpolymer60569984.11UniProt (A6ZV85)
Pfam (PF06732)
Pfam (PF16589)
UniProt (by SIFTS) (P53261)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Nucleolar protein 7,Ribosomal RNA-processing protein 13
40rRibosome biogenesis protein NSA2polymer26129786.81UniProt (A6ZR80)
Pfam (PF01201)
UniProt (by SIFTS) (P40078)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)NOP7-associated protein 2
41sNuclear GTP-binding protein NUG1polymer52057798.71UniProt (P40010)
Pfam (PF08701)
Pfam (PF01926)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Nuclear GTPase 1
42tRibosome biogenesis protein RLP7polymer32236621.11UniProt (P40693)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Ribosomal protein L7-like
43yEukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)eIF-6
44zUPF0642 protein YBL028Cpolymer10612435.41UniProt (P38202)
Pfam (PF10338)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)
45pRibosome biogenesis protein YTM1polymer46051426.61UniProt (A6ZPA9)
Pfam (PF08154)
Pfam (PF00400)
UniProt (by SIFTS) (Q12024)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Microtubule-associated protein YTM1
46q25S rRNA (cytosine(2870)-C(5))-methyltransferasepolymer61869912.21UniProt (P40991)
Pfam (PF17125)
Pfam (PF01189)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Nucleolar protein 2
47uRibosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Ribosomal protein L24-like
48vNucleolar protein 16polymer23126954.41UniProt (P40007)
Pfam (PF09420)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)
49w27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferasepolymer84196656.21UniProt (P25582)
Pfam (PF01728)
Pfam (PF11861)
Pfam (PF07780)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)2'-O-ribose RNA methyltransferase SPB1,AdoMet-dependent rRNA methyltransferase SPB1,S-adenosyl-L-methionine-dependent methyltransferase,Suppressor of PAB1 protein 1
50INucleolar complex-associated protein 3polymer66375689.01UniProt (Q07896)
Pfam (PF07540)
Pfam (PF03914)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)
51JrRNA-processing protein EBP2polymer42749842.61UniProt (P36049)
Pfam (PF05890)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)EBNA1-binding protein homolog
52E60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
53G60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
54M60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae S288c (Baker's yeast)Large ribosomal subunit protein eL14-A
55jZINC IONnon-polymer65.41Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains54
Total formula weight2788649.3
Non-Polymers*Number of molecules1
Total formula weight65.4
All*Total formula weight2788714.7
*Water molecules are not included.

220113

PDB entries from 2024-05-22

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