5U9G
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 16S ribosomal RNA | polymer | 1539 | 498725.4 | 1 | GenBank (944404559) | Escherichia coli | |
2 | 01 | 23S ribosomal RNA | polymer | 2903 | 941322.2 | 1 | GenBank (42756) | Escherichia coli | |
3 | 02 | 5S ribosomal RNA | polymer | 119 | 38483.9 | 1 | GenBank (1072784372) | Escherichia coli | |
4 | Y | Alternative ribosome-rescue factor A | polymer | 72 | 8190.4 | 1 | UniProt (P36675) Pfam (PF03889) In PDB | Escherichia coli K-12 | |
5 | X, W | fMet-tRNA (P- and E-site) | polymer | 77 | 24802.8 | 2 | GenBank (1114191980) | Escherichia coli | |
6 | 03 | 50S ribosomal protein L1 | polymer | 234 | 24765.7 | 1 | UniProt (B7MIX0) UniProt (by SIFTS) (P0A7L0) Pfam (PF00687) In PDB | Escherichia coli | |
7 | 04 | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (D7Z9F8) UniProt (by SIFTS) (P60422) Pfam (PF00181) Pfam (PF03947) In PDB | Escherichia coli | |
8 | 05 | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (D7Z9F5) UniProt (by SIFTS) (P60438) Pfam (PF00297) In PDB | Escherichia coli | |
9 | 06 | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (D7Z9F6) UniProt (by SIFTS) (P60723) Pfam (PF00573) In PDB | Escherichia coli | |
10 | 07 | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (D7Z9G7) UniProt (by SIFTS) (P62399) Pfam (PF00281) Pfam (PF00673) In PDB | Escherichia coli | |
11 | 08 | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (D7Z9H0) UniProt (by SIFTS) (P0AG55) Pfam (PF00347) In PDB | Escherichia coli | |
12 | 09 | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (D7ZI15) UniProt (by SIFTS) (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB | Escherichia coli | |
13 | 10 | 50S ribosomal protein L10 | polymer | 165 | 17736.6 | 1 | UniProt (D7ZA73) UniProt (by SIFTS) (P0A7J3) Pfam (PF00466) In PDB | Escherichia coli | |
14 | 11 | 50S ribosomal protein L11 | polymer | 142 | 14894.4 | 1 | UniProt (D7ZA71) UniProt (by SIFTS) (P0A7J7) Pfam (PF03946) Pfam (PF00298) In PDB | Escherichia coli | |
15 | 12 | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (D7ZET0) UniProt (by SIFTS) (P0AA10) Pfam (PF00572) In PDB | Escherichia coli | |
16 | 13 | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (D7Z9G5) UniProt (by SIFTS) (P0ADY3) Pfam (PF00238) In PDB | Escherichia coli | |
17 | 14 | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (D8BU19) UniProt (by SIFTS) (P02413) Pfam (PF00828) In PDB | Escherichia coli | |
18 | 15 | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (D7Z9G2) UniProt (by SIFTS) (P0ADY7) Pfam (PF00252) In PDB | Escherichia coli | |
19 | 16 | 50S ribosomal protein L17 | polymer | 127 | 14423.7 | 1 | UniProt (B7N179) UniProt (by SIFTS) (P0AG44) Pfam (PF01196) In PDB | Escherichia coli | |
20 | 17 | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (D7Z9H1) UniProt (by SIFTS) (P0C018) Pfam (PF00861) In PDB | Escherichia coli | |
21 | 18 | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (D7ZKU3) UniProt (by SIFTS) (P0A7K6) Pfam (PF01245) In PDB | Escherichia coli | |
22 | 19 | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (B7MAS6) UniProt (by SIFTS) (P0A7L3) Pfam (PF00453) In PDB | Escherichia coli | |
23 | 20 | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (D7ZEN7) UniProt (by SIFTS) (P0AG48) Pfam (PF00829) In PDB | Escherichia coli | |
24 | 21 | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (D7Z9G0) UniProt (by SIFTS) (P61175) Pfam (PF00237) In PDB | Escherichia coli | |
25 | 22 | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (D7X2Z9) UniProt (by SIFTS) (P0ADZ0) Pfam (PF00276) In PDB | Escherichia coli | |
26 | 23 | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (D7Z9G6) UniProt (by SIFTS) (P60624) Pfam (PF00467) Pfam (PF17136) In PDB | Escherichia coli | |
27 | 24 | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (D7XH79) UniProt (by SIFTS) (P68919) Pfam (PF01386) In PDB | Escherichia coli | |
28 | 25 | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (D7ZEN6) UniProt (by SIFTS) (P0A7L8) Pfam (PF01016) In PDB | Escherichia coli | |
29 | 26 | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (S0YB49) UniProt (by SIFTS) (P0A7M2) Pfam (PF00830) In PDB | Escherichia coli | |
30 | 27 | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (D7Z9G3) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6) In PDB | Escherichia coli | |
31 | 28 | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (D7Z9H3) UniProt (by SIFTS) (P0AG51) Pfam (PF00327) In PDB | Escherichia coli | |
32 | 29 | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (D7ZFP6) UniProt (by SIFTS) (P0A7M9) Pfam (PF01197) In PDB | Escherichia coli | |
33 | 30 | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (D7ZGG2) UniProt (by SIFTS) (P0A7N4) Pfam (PF01783) In PDB | Escherichia coli | |
34 | 31 | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (D7Z9P0) UniProt (by SIFTS) (P0A7N9) Pfam (PF00471) In PDB | Escherichia coli | |
35 | 32 | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) UniProt (by SIFTS) (P0A7P5) Pfam (PF00468) In PDB | Escherichia coli | |
36 | 33 | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (D7Z814) UniProt (by SIFTS) (P0A7Q1) Pfam (PF01632) In PDB | Escherichia coli | |
37 | 34 | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) UniProt (by SIFTS) (P0A7Q6) Pfam (PF00444) In PDB | Escherichia coli | |
38 | V | truncated mRNA | polymer | 14 | 4597.8 | 1 | Escherichia coli | ||
39 | Z | Peptide chain release factor RF2 | polymer | 365 | 41300.7 | 1 | UniProt (P07012) Pfam (PF03462) Pfam (PF00472) In PDB | Escherichia coli | RF-2 |
40 | B | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (D7ZK99) UniProt (by SIFTS) (P0A7V0) Pfam (PF00318) In PDB | Escherichia coli | |
41 | C | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (B7MCS9) UniProt (by SIFTS) (P0A7V3) Pfam (PF07650) Pfam (PF00189) In PDB | Escherichia coli | |
42 | D | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (D7Z9H7) UniProt (by SIFTS) (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB | Escherichia coli | |
43 | E | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (D7Z9H2) UniProt (by SIFTS) (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB | Escherichia coli | |
44 | F | 30S ribosomal protein S6 | polymer | 131 | 15211.1 | 1 | UniProt (D7ZI17) UniProt (by SIFTS) (P02358) Pfam (PF01250) In PDB | Escherichia coli | |
45 | G | 30S ribosomal protein S7 | polymer | 156 | 17637.4 | 1 | UniProt (D7ZAN1) UniProt (by SIFTS) (P02359) Pfam (PF00177) In PDB | Escherichia coli | |
46 | H | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (D7Z9G9) UniProt (by SIFTS) (P0A7W7) Pfam (PF00410) In PDB | Escherichia coli | |
47 | I | 30S ribosomal protein S9 | polymer | 130 | 14886.3 | 1 | UniProt (D7ZES9) UniProt (by SIFTS) (P0A7X3) Pfam (PF00380) In PDB | Escherichia coli | |
48 | J | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (D7Z9F4) UniProt (by SIFTS) (P0A7R5) Pfam (PF00338) In PDB | Escherichia coli | |
49 | K | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (B7MCR3) UniProt (by SIFTS) (P0A7R9) Pfam (PF00411) In PDB | Escherichia coli | |
50 | L | 30S ribosomal protein S12 | polymer | 124 | 13768.2 | 1 | UniProt (D7ZAN0) UniProt (by SIFTS) (P0A7S3) Pfam (PF00164) In PDB | Escherichia coli | |
51 | M | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (H4UQ02) UniProt (by SIFTS) (P0A7S9) Pfam (PF00416) In PDB | Escherichia coli | |
52 | N | 30S ribosomal protein S14 | polymer | 101 | 11606.6 | 1 | UniProt (D7Z9G8) UniProt (by SIFTS) (P0AG59) Pfam (PF00253) In PDB | Escherichia coli | |
53 | O | 30S ribosomal protein S15 | polymer | 89 | 10290.8 | 1 | UniProt (D7ZEL4) UniProt (by SIFTS) (P0ADZ4) Pfam (PF00312) In PDB | Escherichia coli | |
54 | P | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (B7MIU7) UniProt (by SIFTS) (P0A7T3) Pfam (PF00886) In PDB | Escherichia coli | |
55 | Q | 30S ribosomal protein S17 | polymer | 84 | 9724.5 | 1 | UniProt (D7Z9G4) UniProt (by SIFTS) (P0AG63) Pfam (PF00366) In PDB | Escherichia coli | |
56 | R | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (A0A0E2KXL3) Pfam (PF01084) UniProt (by SIFTS) (P0A7T7) In PDB | Escherichia coli | |
57 | S | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (D7Z9F9) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) In PDB | Escherichia coli | |
58 | T | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (D7ZAS2) Pfam (PF01649) UniProt (by SIFTS) (P0A7U7) In PDB | Escherichia coli | |
59 | U | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (A0A0E2L2J1) Pfam (PF01165) UniProt (by SIFTS) (P68679) In PDB | Escherichia coli | |
60 | A, 01, 02, X, 14... | MAGNESIUM ION | non-polymer | 24.3 | 348 | Chemie (MG) | |||
61 | 34 | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
01: 1 - 2903 (GenBank: 42756)
PDB | External Database | Details |
---|---|---|
G 1847 | A 1847 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 60 |
Total formula weight | 2296683.8 | |
Non-Polymers* | Number of molecules | 349 |
Total formula weight | 8523.5 | |
All* | Total formula weight | 2305207.3 |