5PHN

PanDDA analysis group deposition -- Crystal Structure of JMJD2D in complex with N09522a

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	Lysine-specific demethylase 4D	polymer	364	42050.5	1	UniProt (Q6B0I6) Pfam (PF02375) Pfam (PF02373) In PDB	Homo sapiens (Human)	JmjC domain-containing histone demethylation protein 3D,Jumonji domain-containing protein 2D
2	A	ZINC ION	non-polymer		65.4	1	Chemie (ZN)
3	A	NICKEL (II) ION	non-polymer		58.7	1	Chemie (NI)
4	A	N-OXALYLGLYCINE	non-polymer		147.1	1	Chemie (OGA)
5	A	1,2-ETHANEDIOL	non-polymer		62.1	8	Chemie (EDO)
6	A	SULFATE ION	non-polymer		96.1	4	Chemie (SO4)
7	A	P-HYDROXYACETOPHENONE	non-polymer		136.1	2	Chemie (AC6)
8		water	water		18.0	419	Chemie (HOH)

Sequence modifications

A: 1 - 342 (UniProt: Q6B0I6)

PDB	External Database	Details
Met -21	-	expression tag
His -20	-	expression tag
His -19	-	expression tag
His -18	-	expression tag
His -17	-	expression tag
His -16	-	expression tag
His -15	-	expression tag
Ser -14	-	expression tag
Ser -13	-	expression tag
Gly -12	-	expression tag
Val -11	-	expression tag
Asp -10	-	expression tag
Leu -9	-	expression tag
Gly -8	-	expression tag
Thr -7	-	expression tag
Glu -6	-	expression tag
Asn -5	-	expression tag
Leu -4	-	expression tag
Tyr -3	-	expression tag
Phe -2	-	expression tag
Gln -1	-	expression tag
Ser 0	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	1
	Total formula weight	42050.5
Non-Polymers*	Number of molecules	17
	Total formula weight	1424.3
All*	Total formula weight	43474.8

*Water molecules are not included.