5KSA
Bel602-DQ8.5-glia-gamma1 complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | HLA class II histocompatibility antigen, DQ alpha 1 chain | polymer | 191 | 21501.8 | 1 | UniProt (P01909) Pfam (PF00993) Pfam (PF07654) In PDB | Homo sapiens (Human) | DC-1 alpha chain,DC-alpha,HLA-DCA,MHC class II DQA1 |
| 2 | B | HLA class II histocompatibility antigen, DQ beta 1 chain | polymer | 225 | 25827.6 | 1 | UniProt (O19707) Pfam (PF00969) Pfam (PF07654) UniProt (by SIFTS) (P08079) UniProt (by SIFTS) (A0A0U5Q247) In PDB | Triticum aestivum | |
| 3 | C | Bel602 alpha TRAV20*01 | polymer | 206 | 23108.7 | 1 | Pfam (PF07686) Pfam (PF09291) UniProt (by SIFTS) (A0A0B4J274) UniProt (by SIFTS) (P01848) In PDB | Homo sapiens | |
| 4 | D | Bel602 beta TRBV9*01 | polymer | 243 | 27398.4 | 1 | Pfam (PF07686) Pfam (PF07654) UniProt (by SIFTS) (A0A580) UniProt (by SIFTS) (A0A5B9) In PDB | Homo sapiens | |
| 5 | J | DQ8.5-glia-gamma1 peptide | polymer | 11 | 1288.3 | 1 | UniProt (by SIFTS) (P08079) In PDB | Triticum aestivum | |
| 6 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 7 | A | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) | |||
| 8 | water | water | 18.0 | 633 | Chemie (HOH) |
Sequence modifications
A: -1 - 181 (UniProt: P01909)
B: -24 - -14 (PDB: 5KSA)
B: 1 - 192 (UniProt: O19707)
| PDB | External Database | Details |
|---|---|---|
| Ser 44 | Cys 70 | conflict |
| Thr 182 | - | expression tag |
| Ser 183 | - | expression tag |
| Gly 184 | - | expression tag |
| Asp 185 | - | expression tag |
| Asp 186 | - | expression tag |
| Asp 187 | - | expression tag |
| Asp 188 | - | expression tag |
| Lys 189 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Ser -13 | - | linker |
| Gly -12 | - | linker |
| Gly -11 | - | linker |
| Ser -10 | - | linker |
| Ile -9 | - | linker |
| Glu -8 | - | linker |
| Gly -7 | - | linker |
| Arg -6 | - | linker |
| Gly -5 | - | linker |
| Gly -4 | - | linker |
| Ser -3 | - | linker |
| Gly -2 | - | linker |
| Ala -1 | - | linker |
| Ser 0 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Thr 193 | - | expression tag |
| Gly 194 | - | expression tag |
| Gly 195 | - | expression tag |
| Asp 196 | - | expression tag |
| Asp 197 | - | expression tag |
| Asp 198 | - | expression tag |
| Asp 199 | - | expression tag |
| Lys 200 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 5 |
| Total formula weight | 99124.8 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 261.3 | |
| All* | Total formula weight | 99386.1 |
