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5J8B

Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A23S Ribosomal RNApolymer2915947895.41GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
2B5S Ribosomal RNApolymer12139188.41GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
3C50S ribosomal protein L1polymer22824736.51UniProt (P27150)
Pfam (PF00687)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
4D50S ribosomal protein L2polymer27630532.61UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
5E50S ribosomal protein L3polymer20622450.21UniProt (Q5SHN8)
Pfam (PF00297)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
6F50S ribosomal protein L4polymer21023271.91UniProt (Q5SHN9)
Pfam (PF00573)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)L1e
7G50S ribosomal protein L5polymer18221061.61UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
8H50S ribosomal protein L6polymer18019568.91UniProt (Q5SHQ3)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
9J50S ribosomal protein L10polymer17318586.61UniProt (Q8VVE3)
Pfam (PF00466)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
10K50S ribosomal protein L11polymer14715526.11UniProt (Q5SLP6)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
11N50S ribosomal protein L13polymer14015927.91UniProt (P60488)
Pfam (PF00572)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
12O50S ribosomal protein L14polymer12213323.61UniProt (Q5SHP8)
Pfam (PF00238)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
13P50S ribosomal protein L15polymer15016319.11UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
14Q50S ribosomal protein L16polymer14115993.91UniProt (P60489)
Pfam (PF00252)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
15R50S ribosomal protein L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
16S50S ribosomal protein L18polymer11212639.81UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL24
17T50S ribosomal protein L19polymer14617188.81UniProt (P60490)
Pfam (PF01245)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
18U50S ribosomal protein L20polymer11813779.31UniProt (P60491)
Pfam (PF00453)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
19V50S ribosomal protein L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
20W50S ribosomal protein L22polymer11312808.11UniProt (Q5SHP3)
Pfam (PF00237)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
21X50S ribosomal protein L23polymer9610759.81UniProt (Q5SHP0)
Pfam (PF00276)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
22Y50S ribosomal protein L24polymer11012085.61UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
23Z50S ribosomal protein L25polymer20623238.61UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TL5
24050S ribosomal protein L27polymer859529.11UniProt (P60493)
Pfam (PF01016)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
25150S ribosomal protein L28polymer9811004.21UniProt (P60494)
Pfam (PF00830)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
26250S ribosomal protein L29polymer728670.31UniProt (Q5SHP6)
Pfam (PF00831)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
27350S ribosomal protein L30polymer606799.11UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
28450S ribosomal protein L31polymer718300.51UniProt (Q5SJE1)
Pfam (PF01197)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
29550S ribosomal protein L32polymer606722.11UniProt (P80339)
Pfam (PF01783)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
30650S ribosomal protein L33polymer546632.91UniProt (P35871)
Pfam (PF00471)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
31750S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
32850S ribosomal protein L35polymer657506.21UniProt (Q5SKU1)
Pfam (PF01632)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
33950S ribosomal protein L36polymer374435.41UniProt (Q5SHR2)
Pfam (PF00444)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)Ribosomal protein B
34a16S Ribosomal RNApolymer1521493652.21GenBank (55771382)Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
35b30S ribosomal protein S2polymer25629317.71UniProt (P80371)
Pfam (PF00318)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
36c30S ribosomal protein S3polymer23926751.11UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
37d30S ribosomal protein S4polymer20924373.41UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
38e30S ribosomal protein S5polymer16217583.41UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
39f30S ribosomal protein S6polymer10111988.81UniProt (Q5SLP8)
Pfam (PF01250)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)TS9
40g30S ribosomal protein S7polymer15618051.01UniProt (P17291)
Pfam (PF00177)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
41h30S ribosomal protein S8polymer13815868.61UniProt (Q5SHQ2)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
42i30S ribosomal protein S9polymer12814410.61UniProt (P80374)
Pfam (PF00380)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
43j30S ribosomal protein S10polymer10511955.01UniProt (Q5SHN7)
Pfam (PF00338)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
44k30S ribosomal protein S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
45l30S ribosomal protein S12polymer13214637.41UniProt (Q5SHN3)
Pfam (PF00164)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
46m30S ribosomal protein S13polymer12614338.91UniProt (P80377)
Pfam (PF00416)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
47n30S ribosomal protein S14 type Zpolymer617158.71UniProt (Q5SHQ1)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
48o30S ribosomal protein S15polymer8910578.41UniProt (Q5SJ76)
Pfam (PF00312)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
49p30S ribosomal protein S16polymer8810410.01UniProt (Q5SJH3)
Pfam (PF00886)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
50q30S ribosomal protein S17polymer10512325.71UniProt (Q5SHP7)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
51r30S ribosomal protein S18polymer8810258.31UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
52s30S ribosomal protein S19polymer9310605.51UniProt (Q5SHP2)
Pfam (PF00203)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
53t30S ribosomal protein S20polymer10611736.11UniProt (P80380)
Pfam (PF01649)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
54u30S ribosomal protein Thxpolymer273350.01UniProt (Q5SIH3)
Pfam (PF17070)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)S31
55vmRNApolymer247804.71Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
56wA-site tRNApolymer7624645.91Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
57xP-site tRNApolymer7724846.91Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
58yE-site tRNApolymer7624629.81Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
59zGDPCP fused to the N-terminus of the ribosomal protein L9,Elongation factor 4polymer67975318.61UniProt (Q5SLQ1)
UniProt (Q5SKA7)
Pfam (PF01281)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF00679)
Pfam (PF06421)
In PDB
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)EF-4,Ribosomal back-translocase LepA
60A, E, W, a, B...MAGNESIUM IONnon-polymer24.3919Chemie (MG)
61Y, 4, n, 5, 6...ZINC IONnon-polymer65.46Chemie (ZN)
62dIRON/SULFUR CLUSTERnon-polymer351.61Chemie (SF4)
63zPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTERnon-polymer521.21Chemie (GCP)
64waterwater18.0966Chemie (HOH)
Sequence modifications
z: -68 - 5 (UniProt: Q5SLQ1)
z: 6 - 610 (UniProt: Q5SKA7)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2367768.7
Non-Polymers*Number of molecules927
Total formula weight23601.6
All*Total formula weight2391370.3
*Water molecules are not included.

219140

PDB entries from 2024-05-01

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