5HRT
Crystal structure of mouse autotaxin in complex with a DNA aptamer
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Ectonucleotide pyrophosphatase/phosphodiesterase family member 2 | polymer | 831 | 95757.4 | 1 | UniProt (Q9R1E6) Pfam (PF01033) Pfam (PF01663) Pfam (PF01223) In PDB | Mus musculus (Mouse) | E-NPP 2,Autotaxin,Extracellular lysophospholipase D,LysoPLD |
2 | B | modified DNA (34-MER) | polymer | 34 | 10730.0 | 1 | Homo sapiens | ||
3 | C | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G16404YH) | |||
4 | D | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
5 | A | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
6 | A, B | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
7 | A | SODIUM ION | non-polymer | 23.0 | 1 | Chemie (NA) | |||
8 | A | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
9 | A | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
10 | A | GLYCEROL | non-polymer | 92.1 | 10 | Chemie (GOL) | |||
11 | water | water | 18.0 | 459 | Chemie (HOH) |
Sequence modifications
A: 36 - 858 (UniProt: Q9R1E6)
PDB | External Database | Details |
---|---|---|
- | Lys 571 | deletion |
- | Val 572 | deletion |
- | Glu 573 | deletion |
- | Pro 574 | deletion |
Ser 859 | - | expression tag |
Arg 860 | - | expression tag |
Glu 861 | - | expression tag |
Asn 862 | - | expression tag |
Leu 863 | - | expression tag |
Tyr 864 | - | expression tag |
Phe 865 | - | expression tag |
Gln 866 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 106487.4 | |
Branched | Number of molecules | 2 |
Total formula weight | 1983.8 | |
Non-Polymers* | Number of molecules | 17 |
Total formula weight | 1229.5 | |
All* | Total formula weight | 109700.6 |