5G5V
Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-038
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | PHOSPHODIESTERASE B1 | polymer | 360 | 40623.3 | 2 | UniProt (Q8WQX9) Pfam (PF00233) In PDB | TRYPANOSOMA BRUCEI | |
| 2 | A, B | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 3 | A, B | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 4 | B, A | GUANIDINE | non-polymer | 59.1 | 11 | Chemie (GAI) | |||
| 5 | B, A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 12 | Chemie (EDO) | |||
| 6 | B, A | FORMIC ACID | non-polymer | 46.0 | 2 | Chemie (FMT) | |||
| 7 | A | (4AS,8AR)-4-(3-{4-[(3R)-3-HYDROXYPYRROLIDINE-1- | non-polymer | 487.6 | 1 | Chemie (8Z4) | |||
| 8 | water | water | 18.0 | 445 | Chemie (HOH) |
Sequence modifications
A, B: 565 - 918 (UniProt: Q8WQX9)
| PDB | External Database | Details |
|---|---|---|
| Gly 559 | - | expression tag |
| Ser 560 | - | expression tag |
| His 561 | - | expression tag |
| Met 562 | - | expression tag |
| Ala 563 | - | expression tag |
| Ser 564 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 81246.7 | |
| Non-Polymers* | Number of molecules | 30 |
| Total formula weight | 2153.7 | |
| All* | Total formula weight | 83400.3 |
