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5EMM

Crystal structure of PRMT5:MEP50 with Compound 15 and sinefungin

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AProtein arginine N-methyltransferase 5polymer64573763.61UniProt (O14744)
Pfam (PF17285)
Pfam (PF05185)
Pfam (PF17286)
In PDB
Homo sapiens (Human)72 kDa ICln-binding protein,Histone-arginine N-methyltransferase PRMT5,Jak-binding protein 1,Shk1 kinase-binding protein 1 homolog,SKB1Hs
2BMethylosome protein 50polymer35037862.41UniProt (Q9BQA1)
Pfam (PF00400)
In PDB
Homo sapiens (Human)MEP-50,Androgen receptor cofactor p44,WD repeat-containing protein 77,p44/Mep50
3ASINEFUNGINnon-polymer381.41Chemie (SFG)
4A~{N}-[(2~{S})-3-(3,4-dihydro-1~{H}-isoquinolin-2-yl)-2-oxidanyl-propyl]-3-(oxan-4-ylamino)benzamidenon-polymer409.51Chemie (5QL)
5AGLYCEROLnon-polymer92.12Chemie (GOL)
6waterwater18.068Chemie (HOH)
Sequence modifications
A: 2 - 637 (UniProt: O14744)
PDBExternal DatabaseDetails
Met -7-initiating methionine
Asp -6-expression tag
Tyr -5-expression tag
Lys -4-expression tag
Asp -3-expression tag
Asp -2-expression tag
Asp -1-expression tag
Asp 0-expression tag
Lys 1-expression tag
B: 2 - 342 (UniProt: Q9BQA1)
PDBExternal DatabaseDetails
Met -7-initiating methionine
His -6-expression tag
His -5-expression tag
His -4-expression tag
His -3-expression tag
His -2-expression tag
His -1-expression tag
His 0-expression tag
His 1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight111626.0
Non-Polymers*Number of molecules4
Total formula weight975.1
All*Total formula weight112601.1
*Water molecules are not included.

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PDB entries from 2024-05-01

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