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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4YBB

High-resolution structure of the Escherichia coli ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, BA16S rRNApolymer1534497405.02GenBank (731469900)Escherichia coli K-12
2AB, BB30S ribosomal protein S2polymer22424971.82UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli (strain K12)
3AC, BC30S ribosomal protein S3polymer20623078.82UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli (strain K12)
4AD, BD30S ribosomal protein S4polymer20523383.02UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli (strain K12)
5AE, BE30S ribosomal protein S5polymer15516361.92UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli (strain K12)
6AF, BF30S ribosomal protein S6polymer10612326.32UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli (strain K12)
7AG, BG30S ribosomal protein S7polymer15116861.52UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli (strain K12)
8AH, BH30S ribosomal protein S8polymer12914015.42UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli (strain K12)
9AI, BI30S ribosomal protein S9polymer12714554.92UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli (strain K12)
10AJ, BJ30S ribosomal protein S10polymer9911325.12UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli (strain K12)
11AK, BK30S ribosomal protein S11polymer11712487.22UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli (strain K12)
12AL, BL30S ribosomal protein S12polymer12313683.12UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli (strain K12)
13AM, BM30S ribosomal protein S13polymer11412625.82UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli (strain K12)
14AN, BN30S ribosomal protein S14polymer10011475.42UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli (strain K12)
15AO, BO30S ribosomal protein S15polymer8810159.62UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli (strain K12)
16AP, BP30S ribosomal protein S16polymer829207.62UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli (strain K12)
17AQ, BQ30S ribosomal protein S17polymer809263.92UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli (strain K12)
18AR, BR30S ribosomal protein S18polymer556466.52UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli (strain K12)
19AS, BS30S ribosomal protein S19polymer799057.62UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli (strain K12)
20AT, BT30S ribosomal protein S20polymer869577.32UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli (strain K12)
21AU, BU30S ribosomal protein S21polymer566629.72UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli (strain K12)
22CA23S rRNApolymer2904941809.61GenBank (731469900)Escherichia coli K-12
23CB, DB5S rRNApolymer12038790.12GenBank (731469900)Escherichia coli K-12
24CC, DC50S ribosomal protein L2polymer27129663.22UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli (strain K12)
25CD50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli (strain K12)
26CE, DE50S ribosomal protein L4polymer20122121.62UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli (strain K12)
27CF, DF50S ribosomal protein L5polymer17720073.22UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli (strain K12)
28CG, DG50S ribosomal protein L6polymer17618801.62UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli (strain K12)
29CH, DH50S ribosomal protein L9polymer14915789.02UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli (strain K12)
30CJ, DJ50S ribosomal protein L11polymer13414020.32UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli (strain K12)
31CK, DK50S ribosomal protein L13polymer14216050.62UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli (strain K12)
32CL, DL50S ribosomal protein L14polymer12313565.12UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli (strain K12)
33CM, DM50S ribosomal protein L15polymer14415008.52UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli (strain K12)
34CN, DN50S ribosomal protein L16polymer13615327.32UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli (strain K12)
35CO, DO50S ribosomal protein L17polymer12514193.52UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli (strain K12)
36CP, DP50S ribosomal protein L18polymer11712794.72UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli (strain K12)
37CQ, DQ50S ribosomal protein L19polymer11413028.12UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli (strain K12)
38CR, DR50S ribosomal protein L20polymer11713396.82UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli (strain K12)
39CS, DS50S ribosomal protein L21polymer10311586.42UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli (strain K12)
40CT, DT50S ribosomal protein L22polymer11012253.42UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli (strain K12)
41CU, DU50S ribosomal protein L23polymer9310546.52UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli (strain K12)
42CV, DV50S ribosomal protein L24polymer10211078.92UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli (strain K12)
43CW, DW50S ribosomal protein L25polymer9410713.52UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli (strain K12)
44CX, DX50S ribosomal protein L27polymer768275.52UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli (strain K12)
45CY, DY50S ribosomal protein L28polymer778896.42UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli (strain K12)
46CZ, DZ50S ribosomal protein L29polymer627155.32UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli (strain K12)
47C0, D050S ribosomal protein L30polymer586423.62UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli (strain K12)
48C1, D150S ribosomal protein L32polymer566332.22UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli (strain K12)
49C2, D250S ribosomal protein L33polymer515928.02UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli
50C3, D350S ribosomal protein L34polymer465397.52UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli (strain K12)
51C4, D450S ribosomal protein L35polymer647181.82UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli (strain K12)Ribosomal protein A
52C5, D550S ribosomal protein L36polymer384377.42UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli (strain K12)Ribosomal protein B
53DA23S rRNApolymer2903941505.41GenBank (731469900)Escherichia coli K-12
54DD50S ribosomal protein L3polymer20922291.61UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli (strain K12)
55DI50S ribosomal protein L10polymer13514568.71UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli (strain K12)50S ribosomal protein L8
56AA, BA, CA, DA, DR...MAGNESIUM IONnon-polymer24.3463Chemie (MG)
57DA, DQ, DR, DS, BA...TETRAETHYLENE GLYCOLnon-polymer194.27Chemie (PG4)
58DA, DE, DK, DN, DS...(4S)-2-METHYL-2,4-PENTANEDIOLnon-polymer118.214Chemie (MPD)
59DA, DM, AA1,4-DIAMINOBUTANEnon-polymer88.216Chemie (PUT)
60AB, D5, C5ZINC IONnon-polymer65.43Chemie (ZN)
61AL, DA, DL, DP, DQ...DI(HYDROXYETHYL)ETHERnon-polymer106.111Chemie (PEG)
62DASPERMIDINEnon-polymer145.24Chemie (SPD)
63DAPENTAETHYLENE GLYCOLnon-polymer238.32Chemie (1PE)
64DA, DS, DU, D1, D3TRIETHYLENE GLYCOLnon-polymer150.29Chemie (PGE)
65DAACETIC ACIDnon-polymer60.13Chemie (ACY)
66DB, DA, DR, D0, D11,2-ETHANEDIOLnon-polymer62.112Chemie (EDO)
67DAGUANINEnon-polymer151.11Chemie (GUN)
68DA2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOLnon-polymer122.11Chemie (TRS)
69waterwater18.07750Chemie (HOH)
Sequence modifications
CA: 1 - 2904 (GenBank: 731469900)
PDBExternal DatabaseDetails
U 2798Unk 4143004conflict
A 2800Unk 4143006conflict
DA: 1 - 2903 (GenBank: 731469900)
PDBExternal DatabaseDetails
U 2798Unk 4143004conflict
A 2800Unk 4143006conflict
DI: 2 - 136 (UniProt: P0A7J3)
PDBExternal DatabaseDetails
Val 85Ser 85conflict
Thr 86Met 86conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains105
Total formula weight4249826.5
Non-Polymers*Number of molecules546
Total formula weight20648.5
All*Total formula weight4270475.1
*Water molecules are not included.

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PDB entries from 2024-05-15

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