4V9J
70S ribosome translocation intermediate GDPNP-II containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AB, CB | 30S ribosomal protein S2 | polymer | 235 | 27116.4 | 2 | UniProt (P62662) Pfam (PF00318) In PDB | Thermus thermophilus | |
2 | AC, CC | 30S ribosomal protein S3 | polymer | 207 | 22975.6 | 2 | UniProt (P62663) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus | |
3 | AD, CD | 30S ribosomal protein S4 | polymer | 208 | 24242.3 | 2 | UniProt (P62664) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus | |
4 | AE, CE | 30S ribosomal protein S5 | polymer | 151 | 16460.2 | 2 | UniProt (P62665) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus | |
5 | AF, CF | 30S ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (P62666) Pfam (PF01250) In PDB | Thermus thermophilus | TS9 |
6 | AG, CG | 30S ribosomal protein S7 | polymer | 155 | 17919.8 | 2 | UniProt (P62667) Pfam (PF00177) In PDB | Thermus thermophilus | |
7 | AH, CH | 30S ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (P62668) Pfam (PF00410) In PDB | Thermus thermophilus | |
8 | AI, CI | 30S ribosomal protein S9 | polymer | 127 | 14298.5 | 2 | UniProt (P62669) Pfam (PF00380) In PDB | Thermus thermophilus | |
9 | AJ, CJ | 30S ribosomal protein S10 | polymer | 99 | 11398.3 | 2 | UniProt (P62653) Pfam (PF00338) In PDB | Thermus thermophilus | |
10 | AK, CK | 30S ribosomal protein S11 | polymer | 119 | 12606.4 | 2 | UniProt (P62654) Pfam (PF00411) In PDB | Thermus thermophilus | |
11 | AL, CL | 30S ribosomal protein S12 | polymer | 125 | 13875.4 | 2 | UniProt (P61941) Pfam (PF00164) In PDB | Thermus thermophilus | |
12 | AM, CM | 30S ribosomal protein S13 | polymer | 125 | 14207.7 | 2 | UniProt (P62655) Pfam (PF00416) In PDB | Thermus thermophilus | |
13 | AN, CN | 30S ribosomal protein S14 type Z | polymer | 60 | 7027.5 | 2 | UniProt (P62656) Pfam (PF00253) In PDB | Thermus thermophilus | |
14 | AO, CO | 30S ribosomal protein S15 | polymer | 88 | 10447.2 | 2 | UniProt (P62657) Pfam (PF00312) In PDB | Thermus thermophilus | |
15 | AP, CP | 30S ribosomal protein S16 | polymer | 84 | 9995.5 | 2 | UniProt (P62238) Pfam (PF00886) In PDB | Thermus thermophilus | |
16 | AQ, CQ | 30S ribosomal protein S17 | polymer | 100 | 11879.1 | 2 | UniProt (P62658) Pfam (PF00366) In PDB | Thermus thermophilus | |
17 | AR, CR | 30S ribosomal protein S18 | polymer | 70 | 8155.8 | 2 | UniProt (P62659) Pfam (PF01084) In PDB | Thermus thermophilus | |
18 | AS, CS | 30S ribosomal protein S19 | polymer | 79 | 9006.5 | 2 | UniProt (P62660) Pfam (PF00203) In PDB | Thermus thermophilus | |
19 | AT, CT | 30S ribosomal protein S20 | polymer | 99 | 10907.1 | 2 | UniProt (P62661) Pfam (PF01649) In PDB | Thermus thermophilus | |
20 | AA, CA | 16S ribosomal RNA | polymer | 1511 | 490593.5 | 2 | Thermus thermophilus | ||
21 | AV, CV | messenger RNA | polymer | 18 | 5907.6 | 2 | Thermus thermophilus | ||
22 | AW, CW | tRNA-Met | polymer | 77 | 24728.7 | 2 | Escherichia coli | ||
23 | AY, CY | Elongation factor G | polymer | 687 | 76547.6 | 2 | UniProt (Q72I01) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) UniProt (by SIFTS) (Q5SHN5) In PDB | Thermus thermophilus | EF-G |
24 | AU, CU | Viomycin | polymer | 6 | 703.7 | 2 | NOR (NOR00633) BIRD (PRD_000226) | Streptomyces | |
25 | BC, DC | 50S ribosomal protein L1 | polymer | 228 | 24741.5 | 2 | UniProt (Q72GV9) Pfam (PF00687) In PDB | Thermus thermophilus | |
26 | BD, DD | 50S ribosomal protein L2 | polymer | 275 | 30401.4 | 2 | UniProt (Q72I07) Pfam (PF00181) Pfam (PF03947) In PDB | Thermus thermophilus | |
27 | BE, DE | 50S ribosomal protein L3 | polymer | 205 | 22321.0 | 2 | UniProt (Q72I04) Pfam (PF00297) In PDB | Thermus thermophilus | |
28 | BF, DF | 50S ribosomal protein L4 | polymer | 208 | 23071.7 | 2 | UniProt (Q72I05) Pfam (PF00573) In PDB | Thermus thermophilus | L1e |
29 | BG, DG | 50S ribosomal protein L5 | polymer | 181 | 20930.4 | 2 | UniProt (Q72I16) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (Q5SHQ0) In PDB | Thermus thermophilus | |
30 | BH, DH | 50S ribosomal protein L6 | polymer | 167 | 18088.0 | 2 | UniProt (Q72I19) Pfam (PF00347) In PDB | Thermus thermophilus | |
31 | BJ, DJ | 50S ribosomal protein L10 | polymer | 170 | 14485.8 | 2 | Thermus thermophilus | ||
32 | BK, DK | 50S ribosomal protein L11 | polymer | 140 | 14754.2 | 2 | UniProt (P62442) Pfam (PF03946) Pfam (PF00298) In PDB | Thermus thermophilus | |
33 | BO, DO | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q72I14) Pfam (PF00238) In PDB | Thermus thermophilus | |
34 | BP, DP | 50S ribosomal protein L15 | polymer | 146 | 15858.5 | 2 | UniProt (Q72I23) Pfam (PF00828) In PDB | Thermus thermophilus | |
35 | BQ, DQ | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (Q72I11) Pfam (PF00252) In PDB | Thermus thermophilus | |
36 | BR, DR | 50S ribosomal protein L17 | polymer | 117 | 13619.0 | 2 | UniProt (Q72I33) Pfam (PF01196) In PDB | Thermus thermophilus | |
37 | BS, DS | 50S ribosomal protein L18 | polymer | 99 | 10998.9 | 2 | UniProt (Q72I20) Pfam (PF00861) In PDB | Thermus thermophilus | TL24 |
38 | BT, DT | 50S ribosomal protein L19 | polymer | 138 | 16289.9 | 2 | UniProt (Q72JU9) Pfam (PF01245) In PDB | Thermus thermophilus | |
39 | BU, DU | 50S ribosomal protein L20 | polymer | 117 | 13648.1 | 2 | UniProt (Q72L76) Pfam (PF00453) In PDB | Thermus thermophilus | |
40 | BV, DV | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (Q72HR2) Pfam (PF00829) In PDB | Thermus thermophilus | |
41 | BW, DW | 50S ribosomal protein L22 | polymer | 113 | 12808.1 | 2 | UniProt (Q72I09) Pfam (PF00237) In PDB | Thermus thermophilus | |
42 | BX, DX | 50S ribosomal protein L23 | polymer | 93 | 10386.3 | 2 | UniProt (Q72I06) Pfam (PF00276) In PDB | Thermus thermophilus | |
43 | BY, DY | 50S ribosomal protein L24 | polymer | 107 | 11696.2 | 2 | UniProt (Q72I15) Pfam (PF00467) Pfam (PF17136) In PDB | Thermus thermophilus | |
44 | BZ, DZ | 50S ribosomal protein L25 | polymer | 185 | 20879.0 | 2 | UniProt (Q72IA7) Pfam (PF01386) Pfam (PF14693) In PDB | Thermus thermophilus | TL5 |
45 | B0, D0 | 50S ribosomal protein L27 | polymer | 84 | 9397.9 | 2 | UniProt (Q72HR3) Pfam (PF01016) In PDB | Thermus thermophilus | |
46 | B1, D1 | 50S ribosomal protein L28 | polymer | 93 | 10430.4 | 2 | UniProt (Q72G84) Pfam (PF00830) In PDB | Thermus thermophilus | |
47 | B4, D4 | 50S ribosomal protein L31 | polymer | 35 | 3893.6 | 2 | UniProt (Q72JR0) Pfam (PF01197) In PDB | Thermus thermophilus | |
48 | BN, DN | 50S ribosomal protein L13 | polymer | 138 | 15699.7 | 2 | UniProt (Q72IN1) Pfam (PF00572) In PDB | Thermus thermophilus | |
49 | B2, D2 | 50S ribosomal protein L29 | polymer | 71 | 8539.1 | 2 | UniProt (Q72I12) Pfam (PF00831) In PDB | Thermus thermophilus | |
50 | B3, D3 | 50S ribosomal protein L30 | polymer | 60 | 6799.1 | 2 | UniProt (Q72I22) Pfam (PF00327) In PDB | Thermus thermophilus | |
51 | B5, D5 | 50S ribosomal protein L32 | polymer | 59 | 6590.9 | 2 | UniProt (P62652) Pfam (PF01783) In PDB | Thermus thermophilus | |
52 | B6, D6 | 50S ribosomal protein L33 | polymer | 50 | 6214.4 | 2 | UniProt (Q72GW3) Pfam (PF00471) In PDB | Thermus thermophilus | |
53 | B7, D7 | 50S ribosomal protein L34 | polymer | 49 | 6132.4 | 2 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus | |
54 | B8, D8 | 50S ribosomal protein L35 | polymer | 64 | 7375.0 | 2 | UniProt (Q72L77) Pfam (PF01632) In PDB | Thermus thermophilus | |
55 | B9, D9 | 50S ribosomal protein L36 | polymer | 37 | 4435.4 | 2 | UniProt (Q72I28) Pfam (PF00444) In PDB | Thermus thermophilus | Ribosomal protein B |
56 | Be, De | 50S ribosomal protein L7/L12 | polymer | 103 | 10280.1 | 2 | UniProt (Q72GS2) Pfam (PF00542) In PDB | Thermus thermophilus | |
57 | Bf, Bg, Df, Dg | 50S ribosomal protein L7/L12 | polymer | 31 | 2656.3 | 4 | Thermus thermophilus | ||
58 | Bh, Dh | 50S ribosomal protein L7/L12 | polymer | 30 | 2571.2 | 2 | Thermus thermophilus | ||
59 | BB, DB | 5S ribosomal RNA | polymer | 119 | 38553.0 | 2 | Thermus thermophilus | ||
60 | BA, DA | 23S ribosomal RNA | polymer | 2879 | 936302.1 | 2 | Thermus thermophilus | ||
61 | AY, CY | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 2 | Chemie (GNP) | |||
62 | AY, CY | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) |
Sequence modifications
AY, CY: 4 - 690 (UniProt: Q72I01)
BC, DC: 2 - 229 (UniProt: Q72GV9)
BF, DF: 1 - 208 (UniProt: Q72I05)
BG, DG: 2 - 182 (UniProt: Q72I16)
BO, DO: 1 - 122 (UniProt: Q72I14)
BQ, DQ: 1 - 141 (UniProt: Q72I11)
BT, DT: 1 - 138 (UniProt: Q72JU9)
B0, D0: 2 - 85 (UniProt: Q72HR3)
B1, D1: 3 - 95 (UniProt: Q72G84)
B5, D5: 2 - 60 (UniProt: P62652)
Be, De: 51 - 122 (UniProt: Q72GS2)
Be, De: 1 - 50 (PDB: 4V9J)
PDB | External Database | Details |
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Lys 129 | His 129 | conflict |
Asn 226 | His 226 | conflict |
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Val 20 | Ile 20 | conflict |
Arg 28 | His 28 | conflict |
PDB | External Database | Details |
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Lys 2 | - | insertion |
Glu 3 | - | insertion |
Val 4 | - | insertion |
Ala 5 | - | insertion |
Val 6 | - | insertion |
PDB | External Database | Details |
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Val 5 | Leu 5 | conflict |
PDB | External Database | Details |
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Ile 69 | Val 69 | conflict |
PDB | External Database | Details |
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Tyr 32 | Phe 32 | conflict |
PDB | External Database | Details |
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Gln 123 | Lys 123 | conflict |
Ala 135 | Val 135 | conflict |
PDB | External Database | Details |
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Arg 11 | Lys 11 | conflict |
PDB | External Database | Details |
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Lys 81 | Arg 81 | conflict |
PDB | External Database | Details |
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Thr 29 | Ile 29 | conflict |
Be, De: 1 - 50 (PDB: 4V9J)
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 122 |
Total formula weight | 4565498.0 | |
Non-Polymers* | Number of molecules | 4 |
Total formula weight | 1093.0 | |
All* | Total formula weight | 4566591.0 |