4V9I
Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AA, CA | 16S ribosomal RNA | polymer | 1504 | 488391.2 | 2 | GenBank (55771382) | Thermus thermophilus | |
2 | AB, CB | 30S Ribosomal protein S2 | polymer | 234 | 26987.3 | 2 | UniProt (P80371) Pfam (PF00318) In PDB | Thermus thermophilus | |
3 | AC, CC | 30S Ribosomal protein S3 | polymer | 206 | 22862.4 | 2 | UniProt (P80372) Pfam (PF07650) Pfam (PF00189) In PDB | Thermus thermophilus | |
4 | AD, CD | 30S Ribosomal protein S4 | polymer | 208 | 24242.3 | 2 | UniProt (P80373) Pfam (PF00163) Pfam (PF01479) In PDB | Thermus thermophilus | |
5 | AE, CE | 30S Ribosomal protein S5 | polymer | 150 | 16331.1 | 2 | UniProt (Q5SHQ5) Pfam (PF00333) Pfam (PF03719) In PDB | Thermus thermophilus | |
6 | AF, CF | 30S Ribosomal protein S6 | polymer | 101 | 11988.8 | 2 | UniProt (Q5SLP8) Pfam (PF01250) In PDB | Thermus thermophilus | |
7 | AG, CG | 30S Ribosomal protein S7 | polymer | 155 | 17919.8 | 2 | UniProt (P17291) Pfam (PF00177) In PDB | Thermus thermophilus | |
8 | AH, CH | 30S Ribosomal protein S8 | polymer | 138 | 15868.6 | 2 | UniProt (Q5SHQ2) In PDB | Thermus thermophilus | |
9 | AI, CI | 30S Ribosomal protein S9 | polymer | 127 | 14298.5 | 2 | UniProt (P80374) Pfam (PF00380) In PDB | Thermus thermophilus | |
10 | AJ, CJ | 30S Ribosomal protein S10 | polymer | 98 | 11299.2 | 2 | UniProt (Q5SHN7) Pfam (PF00338) In PDB | Thermus thermophilus | |
11 | AK, CK | 30S Ribosomal protein S11 | polymer | 119 | 12606.4 | 2 | UniProt (P80376) Pfam (PF00411) In PDB | Thermus thermophilus | |
12 | AL, CL | 30S Ribosomal protein S12 | polymer | 124 | 13804.3 | 2 | UniProt (Q5SHN3) Pfam (PF00164) In PDB | Thermus thermophilus | |
13 | AM, CM | 30S Ribosomal protein S13 | polymer | 124 | 14078.5 | 2 | UniProt (P80377) Pfam (PF00416) In PDB | Thermus thermophilus | |
14 | AN, CN | 30S Ribosomal protein S14 | polymer | 60 | 7027.5 | 2 | UniProt (Q5SHQ1) In PDB | Thermus thermophilus | |
15 | AO, CO | 30S Ribosomal protein S15 | polymer | 88 | 10447.2 | 2 | UniProt (Q5SJ76) Pfam (PF00312) In PDB | Thermus thermophilus | |
16 | AP, CP | 30S Ribosomal protein S16 | polymer | 83 | 9924.5 | 2 | UniProt (Q5SJH3) Pfam (PF00886) In PDB | Thermus thermophilus | |
17 | AQ, CQ | 30S Ribosomal protein S17 | polymer | 99 | 11722.9 | 2 | UniProt (Q5SHP7) In PDB | Thermus thermophilus | |
18 | AR, CR | 30S Ribosomal protein S18 | polymer | 70 | 8155.8 | 2 | UniProt (Q5SLQ0) Pfam (PF01084) In PDB | Thermus thermophilus | |
19 | AS, CS | 30S Ribosomal protein S19 | polymer | 78 | 8949.4 | 2 | UniProt (Q5SHP2) Pfam (PF00203) In PDB | Thermus thermophilus | |
20 | AT, CT | 30S Ribosomal protein S20 | polymer | 99 | 10921.1 | 2 | UniProt (P80380) Pfam (PF01649) In PDB | Thermus thermophilus | |
21 | AU, CU | 30S Ribosomal protein THX | polymer | 24 | 2960.5 | 2 | UniProt (Q5SIH3) Pfam (PF17070) In PDB | Thermus thermophilus | |
22 | AV, CV | P-SITE tRNA | polymer | 77 | 24802.8 | 2 | GenBank (443419838) | Escherichia coli | |
23 | AW, CW | E-SITE tRNA | polymer | 76 | 24485.5 | 2 | GenBank (443419838) | Escherichia coli | |
24 | AY, CY | A-SITE tRNA | polymer | 75 | 24430.6 | 2 | GenBank (443419838) | Escherichia coli | |
25 | AX | mRNA | polymer | 7 | 2245.4 | 1 | Synthetic construct | ||
26 | BA, DA | 23S ribosomal RNA | polymer | 2915 | 947919.4 | 2 | GenBank (55771382) | Thermus thermophilus | |
27 | BB, DB | 5S ribosomal RNA | polymer | 119 | 38553.0 | 2 | GenBank (55771382) | Thermus thermophilus | |
28 | BC | 50S ribosomal protein L1 | polymer | 206 | 17813.9 | 1 | Thermus thermophilus | ||
29 | BD, DD | 50S ribosomal protein L2 | polymer | 271 | 29828.6 | 2 | UniProt (P60405) Pfam (PF00181) Pfam (PF03947) In PDB | Thermus thermophilus | |
30 | BE, DE | 50S ribosomal protein L3 | polymer | 204 | 22250.0 | 2 | UniProt (Q5SHN8) Pfam (PF00297) In PDB | Thermus thermophilus | |
31 | BF, DF | 50S ribosomal protein L4 | polymer | 207 | 23014.7 | 2 | UniProt (Q5SHN9) Pfam (PF00573) In PDB | Thermus thermophilus | |
32 | BG, DG | 50S ribosomal protein L5 | polymer | 181 | 20930.4 | 2 | UniProt (Q5SHQ0) Pfam (PF00281) Pfam (PF00673) In PDB | Thermus thermophilus | |
33 | BH, DH | 50S ribosomal protein L6 | polymer | 159 | 17363.1 | 2 | UniProt (Q5SHQ3) In PDB | Thermus thermophilus | |
34 | BI, DI | 50S ribosomal protein L9 | polymer | 145 | 16093.9 | 2 | UniProt (Q5SLQ1) Pfam (PF01281) Pfam (PF03948) In PDB | Thermus thermophilus | |
35 | BJ, DJ | 50S ribosomal protein L10 | polymer | 130 | 9258.1 | 2 | Thermus thermophilus | ||
36 | BN, DN | 50S ribosomal protein L13 | polymer | 138 | 15699.7 | 2 | UniProt (P60488) Pfam (PF00572) In PDB | Thermus thermophilus | |
37 | BO, DO | 50S ribosomal protein L14 | polymer | 122 | 13323.6 | 2 | UniProt (Q5SHP8) Pfam (PF00238) In PDB | Thermus thermophilus | |
38 | BP, DP | 50S ribosomal protein L15 | polymer | 146 | 15858.5 | 2 | UniProt (Q5SHQ7) Pfam (PF00828) In PDB | Thermus thermophilus | |
39 | BQ, DQ | 50S ribosomal protein L16 | polymer | 141 | 15993.9 | 2 | UniProt (P60489) Pfam (PF00252) In PDB | Thermus thermophilus | |
40 | BR, DR | 50S ribosomal protein L17 | polymer | 117 | 13619.0 | 2 | UniProt (Q9Z9H5) Pfam (PF01196) In PDB | Thermus thermophilus | |
41 | BS, DS | 50S ribosomal protein L18 | polymer | 98 | 10941.9 | 2 | UniProt (Q5SHQ4) Pfam (PF00861) In PDB | Thermus thermophilus | |
42 | BT, DT | 50S ribosomal protein L19 | polymer | 137 | 16218.8 | 2 | UniProt (P60490) Pfam (PF01245) In PDB | Thermus thermophilus | |
43 | BU, DU | 50S ribosomal protein L20 | polymer | 117 | 13572.0 | 2 | UniProt (P60491) Pfam (PF00453) In PDB | Thermus thermophilus | |
44 | BV, DV | 50S ribosomal protein L21 | polymer | 101 | 11069.2 | 2 | UniProt (P60492) Pfam (PF00829) In PDB | Thermus thermophilus | |
45 | BW, DW | 50S ribosomal protein L22 | polymer | 113 | 12750.0 | 2 | UniProt (Q5SHP3) Pfam (PF00237) In PDB | Thermus thermophilus | |
46 | BX, DX | 50S ribosomal protein L23 | polymer | 92 | 10273.1 | 2 | UniProt (Q5SHP0) Pfam (PF00276) In PDB | Thermus thermophilus | |
47 | BY, DY | 50S ribosomal protein L24 | polymer | 100 | 11078.5 | 2 | UniProt (Q5SHP9) Pfam (PF00467) Pfam (PF17136) In PDB | Thermus thermophilus | |
48 | BZ, DZ | 50S ribosomal protein L25 | polymer | 176 | 19892.9 | 2 | UniProt (Q5SHZ1) Pfam (PF01386) Pfam (PF14693) In PDB | Thermus thermophilus | |
49 | B0, D0 | 50S ribosomal protein L27 | polymer | 84 | 9397.9 | 2 | UniProt (P60493) Pfam (PF01016) In PDB | Thermus thermophilus | |
50 | B1, D1 | 50S ribosomal protein L28 | polymer | 93 | 10458.4 | 2 | UniProt (P60494) Pfam (PF00830) In PDB | Thermus thermophilus | |
51 | B2, D2 | 50S ribosomal protein L29 | polymer | 71 | 8539.1 | 2 | UniProt (Q5SHP6) Pfam (PF00831) In PDB | Thermus thermophilus | |
52 | B3, D3 | 50S ribosomal protein L30 | polymer | 59 | 6670.0 | 2 | UniProt (Q5SHQ6) Pfam (PF00327) In PDB | Thermus thermophilus | |
53 | B4, D4 | 50S ribosomal protein L31 | polymer | 30 | 3278.9 | 2 | UniProt (Q5SJE1) Pfam (PF01197) In PDB | Thermus thermophilus | |
54 | B5, D5 | 50S ribosomal protein L32 | polymer | 59 | 6590.9 | 2 | UniProt (P80339) Pfam (PF01783) In PDB | Thermus thermophilus | |
55 | B6, D6 | 50S ribosomal protein L33 | polymer | 44 | 5473.4 | 2 | UniProt (P35871) Pfam (PF00471) In PDB | Thermus thermophilus | |
56 | B7, D7 | 50S ribosomal protein L34 | polymer | 48 | 5975.3 | 2 | UniProt (P80340) Pfam (PF00468) In PDB | Thermus thermophilus | |
57 | B8, D8 | 50S ribosomal protein L35 | polymer | 63 | 7245.9 | 2 | UniProt (Q5SKU1) Pfam (PF01632) In PDB | Thermus thermophilus | |
58 | B9, D9 | 50S ribosomal protein L36 | polymer | 36 | 4304.2 | 2 | UniProt (Q5SHR2) Pfam (PF00444) In PDB | Thermus thermophilus | |
59 | CX | mRNA | polymer | 4 | 1241.8 | 1 | Synthetic construct | ||
60 | DC | 50S Ribosomal protein L1 | polymer | 196 | 17103.1 | 1 | Thermus thermophilus |
Sequence modifications
AI, CI: 2 - 128 (UniProt: P80374)
AY, CY: 1 - 75 (GenBank: 443419838)
BA, DA: 0 - 2914 (GenBank: 55771382)
BU, DU: 2 - 118 (UniProt: P60491)
BW, DW: 1 - 113 (UniProt: Q5SHP3)
B1, D1: 3 - 95 (UniProt: P60494)
PDB | External Database | Details |
---|---|---|
Arg 58 | His 58 | CONFLICT |
PDB | External Database | Details |
---|---|---|
- | C 2796112 | DELETION |
PDB | External Database | Details |
---|---|---|
A 1151 | G 10391 | CONFLICT |
PDB | External Database | Details |
---|---|---|
Ala 32 | Phe 32 | CONFLICT |
PDB | External Database | Details |
---|---|---|
Ala 113 | Lys 113 | CONFLICT |
PDB | External Database | Details |
---|---|---|
Arg 81 | Lys 81 | CONFLICT |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 116 |
Total formula weight | 4454288.2 | |
All* | Total formula weight | 4454288.2 |