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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V6G

Initiation complex of 70S ribosome with two tRNAs and mRNA.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA, CA16S RRNA (E.COLI NUMBERING)polymer1517492467.52GenBank (M26923.1)Thermus thermophilus
2AE, CE30S RIBOSOMAL PROTEIN S2polymer25629317.72UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
3AF, CF30S RIBOSOMAL PROTEIN S3polymer23926751.12UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
4AG, CG30S RIBOSOMAL PROTEIN S4polymer20924373.42UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
5AH, CH30S RIBOSOMAL PROTEIN S5polymer16217583.42UniProt (Q5SHQ5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Thermus thermophilus
6AI, CI30S RIBOSOMAL PROTEIN S6polymer10111988.82UniProt (Q5SLP8)
Pfam (PF01250)
In PDB		Thermus thermophilus
7AJ, CJ30S RIBOSOMAL PROTEIN S7polymer15618051.02UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
8AK, CK30S RIBOSOMAL PROTEIN S8polymer13815868.62UniProt (Q5SHQ2)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB		Thermus thermophilus
9AL, CL30S RIBOSOMAL PROTEIN S9polymer12814410.62UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
10AM, CM30S RIBOSOMAL PROTEIN S10polymer10511955.02UniProt (Q5SHN7)
Pfam (PF00338)
In PDB		Thermus thermophilus
11AN, CN30S RIBOSOMAL PROTEIN S11polymer12913737.92UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
12AO, CO30S RIBOSOMAL PROTEIN S12polymer13214637.42UniProt (Q5SHN3)
Pfam (PF00164)
In PDB		Thermus thermophilus
13AP, CP30S RIBOSOMAL PROTEIN S13polymer12614338.92UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
14AQ, CQ30S RIBOSOMAL PROTEIN S14polymer617158.72UniProt (P24320)
UniProt (Q5SHQ1)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB		Thermus thermophilus
15AR, CR30S RIBOSOMAL PROTEIN S15polymer8910578.42UniProt (Q5SJ76)
Pfam (PF00312)
In PDB		Thermus thermophilus
16AS, CS30S RIBOSOMAL PROTEIN S16polymer8810410.02UniProt (Q5SJH3)
In PDB		Thermus thermophilus
17AT, CT30S RIBOSOMAL PROTEIN S17polymer10512325.72UniProt (Q5SHP7)
Pfam (PF00366)
UniProt (by SIFTS) (P0DOY7)
In PDB		Thermus thermophilus
18AU, CU30S RIBOSOMAL PROTEIN S18polymer8810258.32UniProt (Q5SLQ0)
Pfam (PF01084)
In PDB		Thermus thermophilus
19AV, CV30S RIBOSOMAL PROTEIN S19polymer9310605.52UniProt (Q5SHP2)
Pfam (PF00203)
In PDB		Thermus thermophilus
20AW, CW30S RIBOSOMAL PROTEIN S20polymer10611736.12UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
21AX, CX30S RIBOSOMAL PROTEIN THXpolymer273350.02UniProt (Q5SIH3)
Pfam (PF17070)
In PDB		Thermus thermophilus
22AC, AD, CC, CD, CBTRNA FMET (UNMODIFIED BASES)polymer7724801.85Escherichia coli
23A1, C1MRNApolymer258227.12Synthetic construct
24BA, DA23S ribosomal RNApolymer2898942506.12GenBank (AP008226.1)Thermus thermophilus
25BB, DB5S ribosomal RNApolymer12239540.62GenBank (X01554.1)Thermus thermophilus
26BD, DD50S ribosomal protein L2polymer27630532.62UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
27BE, DE50S ribosomal protein L3polymer20622450.22UniProt (Q5SHN8)
Pfam (PF00297)
In PDB		Thermus thermophilus
28BF, DF50S ribosomal protein L4polymer21023271.92UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilusL1e
29BG, DG50S ribosomal protein L5polymer18221061.62UniProt (Q5SHQ0)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Thermus thermophilus
30BH, DH50S ribosomal protein L6polymer18019568.92UniProt (Q5SHQ3)
Pfam (PF00347)
UniProt (by SIFTS) (P0DOY8)
In PDB		Thermus thermophilus
31BK, DK50S ribosomal protein L9polymer14816422.22UniProt (Q5SLQ1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
32BM, DM50S ribosomal protein L13polymer14015927.92UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
33BN, DN50S ribosomal protein L14polymer12213323.62UniProt (Q5SHP8)
Pfam (PF00238)
In PDB		Thermus thermophilus
34BO, DO50S ribosomal protein L15polymer15016319.12UniProt (Q5SHQ7)
Pfam (PF00828)
In PDB		Thermus thermophilus
35BP, DP50S ribosomal protein L16polymer14115993.92UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
36B0, D050S ribosomal protein L17polymer11813750.12UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
37BQ, DQ50S ribosomal protein L18polymer11212639.82UniProt (Q5SHQ4)
Pfam (PF00861)
In PDB		Thermus thermophilusTL24
38BR, DR50S ribosomal protein L19polymer14617188.82UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
39B1, D150S ribosomal protein L20polymer11813779.32UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
40B2, D250S ribosomal protein L21polymer10111069.22UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
41BS, DS50S ribosomal protein L22polymer11312808.12UniProt (Q5SHP3)
Pfam (PF00237)
In PDB		Thermus thermophilus
42BT, DT50S ribosomal protein L23polymer9610759.82UniProt (Q5SHP0)
Pfam (PF00276)
In PDB		Thermus thermophilus
43BU, DU50S ribosomal protein L24polymer11012085.62UniProt (Q5SHP9)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Thermus thermophilus
44BV, DV50S ribosomal protein L25polymer20623238.62UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilusTL5
45B3, D350S ribosomal protein L27polymer859529.12UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
46BZ, DZ50S ribosomal protein L28polymer9811004.22UniProt (P60494)
Pfam (PF00830)
In PDB		Thermus thermophilus
47BW, DW50S ribosomal protein L29polymer728670.32UniProt (Q5SHP6)
Pfam (PF00831)
In PDB		Thermus thermophilus
48BX, DX50S ribosomal protein L30polymer606799.12UniProt (Q5SHQ6)
Pfam (PF00327)
In PDB		Thermus thermophilus
49B4, D450S ribosomal protein L31polymer718300.52UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
50B5, D550S ribosomal protein L32polymer606722.12UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
51B6, D650S ribosomal protein L33polymer546632.92UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
52B7, D750S ribosomal protein L34polymer496132.42UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
53B8, D850S ribosomal protein L35polymer657506.22UniProt (Q5SKU1)
Pfam (PF01632)
In PDB		Thermus thermophilus
54BA, CA, DA, DO, D3...MAGNESIUM IONnon-polymer24.32653Chemie (MG)
55AA, AG, CQ, AQ, CGZINC IONnon-polymer65.46Chemie (ZN)
Sequence modifications
AA, CA: 3 - 1542 (GenBank: M26923.1)
PDBExternal DatabaseDetails
G 1542U 2165conflict
AQ, CQ: 1 - 61 (UniProt: P24320)
BA, DA: 6 - 2897 (GenBank: AP008226.1)
PDBExternal DatabaseDetails
-U 9395deletion
-U 9396deletion
-G 9919deletion
-C 9920deletion
-G 9921deletion
-G 9922deletion
-G 9923deletion
-C 9924deletion
-C 9925deletion
-G 9926deletion
-C 9927deletion
-C 9931deletion
-G 9932deletion
-G 9933deletion
-C 9934deletion
-C 9935deletion
A 654C 9938conflict
U 1058G 10343conflict
A 1080C 10365conflict
BB, DB: 0 - 119 (GenBank: X01554.1)
PDBExternal DatabaseDetails
A 1-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains109
Total formula weight4455340.2
Non-Polymers*Number of molecules2659
Total formula weight64873.6
All*Total formula weight4520213.8
*Water molecules are not included.

218853

PDB entries from 2024-04-24

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