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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

4V4Y

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S ribosomal RNApolymer1522493958.31GenBank (155076)Thermus thermophilus
2A1mRNApolymer5015565.71
3AC, AD, ABtRNA PHE (unmodified bases)polymer7624485.53Escherichia coli
4AE30S ribosomal protein S2polymer25629317.71UniProt (P80371)
Pfam (PF00318)
In PDB		Thermus thermophilus
5AF30S ribosomal protein S3polymer23926751.11UniProt (P80372)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Thermus thermophilus
6AG30S ribosomal protein S4polymer20924373.41UniProt (P80373)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Thermus thermophilus
7AH30S ribosomal protein S5polymer16217583.41UniProt (P27152)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (Q5SHQ5)
In PDB		Thermus thermophilus
8AI30S ribosomal protein S6polymer10111988.81UniProt (P23370)
Pfam (PF01250)
UniProt (by SIFTS) (Q5SLP8)
In PDB		Thermus thermophilusTS9
9AJ30S ribosomal protein S7polymer15618051.01UniProt (P17291)
Pfam (PF00177)
In PDB		Thermus thermophilus
10AK30S ribosomal protein S8polymer13815868.61UniProt (P24319)
Pfam (PF00410)
UniProt (by SIFTS) (P0DOY9)
In PDB		Thermus thermophilus
11AL30S ribosomal protein S9polymer12814410.61UniProt (P80374)
Pfam (PF00380)
In PDB		Thermus thermophilus
12AM30S ribosomal protein S10polymer10511955.01UniProt (P80375)
Pfam (PF00338)
UniProt (by SIFTS) (Q5SHN7)
In PDB		Thermus thermophilus
13AN30S ribosomal protein S11polymer12913737.91UniProt (P80376)
Pfam (PF00411)
In PDB		Thermus thermophilus
14AO30S ribosomal protein S12polymer13214637.41UniProt (P17293)
Pfam (PF00164)
UniProt (by SIFTS) (Q5SHN3)
In PDB		Thermus thermophilus
15AP30S ribosomal protein S13polymer12614338.91UniProt (P80377)
Pfam (PF00416)
In PDB		Thermus thermophilus
16AQ30S ribosomal protein S14polymer617158.71UniProt (P24320)
Pfam (PF00253)
UniProt (by SIFTS) (P0DOY6)
In PDB		Thermus thermophilus
17AR30S ribosomal protein S15polymer8910578.41UniProt (P80378)
Pfam (PF00312)
UniProt (by SIFTS) (Q5SJ76)
In PDB		Thermus thermophilus
18AS30S ribosomal protein S16polymer8810410.01UniProt (Q5SJH3)
Pfam (PF00886)
In PDB		Thermus thermophilus
19AT30S ribosomal protein S17polymer10512324.71UniProt (P24321)
Pfam (PF00366)
In PDB		Thermus thermophilus
20AU30S ribosomal protein S18polymer8810244.31UniProt (P80382)
Pfam (PF01084)
In PDB		Thermus thermophilus
21AV30S ribosomal protein S19polymer9310605.51UniProt (P80381)
Pfam (PF00203)
UniProt (by SIFTS) (Q5SHP2)
In PDB		Thermus thermophilus
22AW30S ribosomal protein S20polymer10611736.11UniProt (P80380)
Pfam (PF01649)
In PDB		Thermus thermophilus
23AX30S ribosomal protein Thxpolymer273350.01UniProt (P62612)
Pfam (PF17070)
UniProt (by SIFTS) (Q5SIH3)
In PDB		Thermus thermophilus
24BA23S ribosomal RNApolymer2916948280.71GenBank (48268)Thermus thermophilus
25BB5S ribosomal RNApolymer12339846.81GenBank (48271)Thermus thermophilus
26BC50S ribosomal protein L1polymer22924867.71UniProt (P27150)
Pfam (PF00687)
In PDB		Thermus thermophilus
27BD50S ribosomal protein L2polymer27630532.61UniProt (P60405)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Thermus thermophilus
28BE50S ribosomal protein L3polymer20622450.21UniProt (P52860)
Pfam (PF00297)
UniProt (by SIFTS) (Q5SHN8)
In PDB		Thermus thermophilus
29BF50S ribosomal protein L4polymer21023271.91UniProt (Q5SHN9)
Pfam (PF00573)
In PDB		Thermus thermophilusL1e
30BG50S ribosomal protein L5polymer18221061.61UniProt (P41201)
Pfam (PF00281)
Pfam (PF00673)
UniProt (by SIFTS) (Q5SHQ0)
In PDB		Thermus thermophilusTthL5, TL4
31BH50S ribosomal protein L6polymer18019568.91UniProt (P24316)
Pfam (PF00347)
UniProt (by SIFTS) (P0DOY8)
In PDB		Thermus thermophilus
32BK50S ribosomal protein L9polymer14816422.21UniProt (P27151)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Thermus thermophilus
33BL50S ribosomal protein L11polymer14715526.11UniProt (P36238)
Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (Q5SLP6)
In PDB		Thermus thermophilus
34BM50S ribosomal protein L13polymer14015927.91UniProt (P60488)
Pfam (PF00572)
In PDB		Thermus thermophilus
35BN50S ribosomal protein L14polymer12213309.61UniProt (P60558)
Pfam (PF00238)
In PDB		Thermus thermophilus
36BO50S ribosomal protein L15polymer15016319.11UniProt (P74910)
Pfam (PF00828)
UniProt (by SIFTS) (Q5SHQ7)
In PDB		Thermus thermophilus
37BP50S ribosomal protein L16polymer14115993.91UniProt (P60489)
Pfam (PF00252)
In PDB		Thermus thermophilus
38BQ50S ribosomal protein L17polymer11813750.11UniProt (Q9Z9H5)
Pfam (PF01196)
In PDB		Thermus thermophilus
39BR50S ribosomal protein L18polymer11212639.81UniProt (P80320)
Pfam (PF00861)
UniProt (by SIFTS) (Q5SHQ4)
In PDB		Thermus thermophilusTL24
40BS50S ribosomal protein L19polymer14617188.81UniProt (P60490)
Pfam (PF01245)
In PDB		Thermus thermophilus
41BT50S ribosomal protein L20polymer11813779.31UniProt (P60491)
Pfam (PF00453)
In PDB		Thermus thermophilus
42BU50S ribosomal protein L21polymer10111069.21UniProt (P60492)
Pfam (PF00829)
In PDB		Thermus thermophilus
43BV50S ribosomal protein L22polymer11312808.11UniProt (P48286)
Pfam (PF00237)
UniProt (by SIFTS) (Q5SHP3)
In PDB		Thermus thermophilus
44BW50S ribosomal protein L23polymer9610759.81UniProt (Q9RA57)
Pfam (PF00276)
UniProt (by SIFTS) (Q5SHP0)
In PDB		Thermus thermophilusL*23
45BX50S ribosomal protein L24polymer11012085.61UniProt (Q56435)
Pfam (PF00467)
Pfam (PF17136)
UniProt (by SIFTS) (Q5SHP9)
In PDB		Thermus thermophilus
46BY50S ribosomal protein L25polymer20623238.61UniProt (Q5SHZ1)
Pfam (PF01386)
Pfam (PF14693)
In PDB		Thermus thermophilusTL5
47BZRibosomal protein L27polymer859529.11UniProt (P60493)
Pfam (PF01016)
In PDB		Thermus thermophilus
48B150S ribosomal protein L29polymer678112.61UniProt (Q9LCY4)
Pfam (PF00831)
In PDB		Thermus thermophilus
49B250S ribosomal protein L30polymer606799.11UniProt (P74909)
Pfam (PF00327)
UniProt (by SIFTS) (Q5SHQ6)
In PDB		Thermus thermophilus
50B350S ribosomal protein L31polymer718300.51UniProt (Q5SJE1)
Pfam (PF01197)
In PDB		Thermus thermophilus
51B450S ribosomal protein L32polymer606722.11UniProt (P80339)
Pfam (PF01783)
In PDB		Thermus thermophilus
52B550S ribosomal protein L33polymer546632.91UniProt (P35871)
Pfam (PF00471)
In PDB		Thermus thermophilus
53B650S ribosomal protein L34polymer496132.41UniProt (P80340)
Pfam (PF00468)
In PDB		Thermus thermophilus
54B750S ribosomal protein L35polymer657506.21UniProt (P80341)
Pfam (PF01632)
UniProt (by SIFTS) (Q5SKU1)
In PDB		Thermus thermophilus
55B850S ribosomal protein L36polymer374435.41UniProt (P80256)
Pfam (PF00444)
UniProt (by SIFTS) (Q5SHR2)
In PDB		Thermus thermophilusRibosomal protein B
Sequence modifications
BA: 1 - 2906 (GenBank: 48268)
PDBExternal DatabaseDetails
G 493-INSERTION
BB: 0 - 119 (GenBank: 48271)
PDBExternal DatabaseDetails
A -1-INSERTION
U 120-INSERTION
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains57
Total formula weight2287270.8
All*Total formula weight2287270.8
*Water molecules are not included.

220113

PDB entries from 2024-05-22

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