4LIT

Structure of YcfD a Ribosomal oxygenase from Escherichia coli in complex with Cobalt and 2-oxoglutarate.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	50S ribosomal protein L16 arginine hydroxylase	polymer	407	46177.6	1	UniProt (P27431) Pfam (PF08007) Pfam (PF20514) In PDB	Escherichia coli	Ribosomal oxygenase YcfD, ROX
2	A	COBALT (II) ION	non-polymer		58.9	1	Chemie (CO)
3	A	2-OXOGLUTARIC ACID	non-polymer		146.1	1	Chemie (AKG)
4		water	water		18.0	137	Chemie (HOH)

Sequence modifications

A: 35 - 407 (UniProt: P27431)

PDB	External Database	Details
Met 1	-	expression tag
Gly 2	-	expression tag
Ser 3	-	expression tag
Ser 4	-	expression tag
His 5	-	expression tag
His 6	-	expression tag
His 7	-	expression tag
His 8	-	expression tag
His 9	-	expression tag
His 10	-	expression tag
Ser 11	-	expression tag
Ser 12	-	expression tag
Gly 13	-	expression tag
Leu 14	-	expression tag
Val 15	-	expression tag
Pro 16	-	expression tag
Arg 17	-	expression tag
Gly 18	-	expression tag
Ser 19	-	expression tag
His 20	-	expression tag
Met 21	-	expression tag
Ala 22	-	expression tag
Ser 23	-	expression tag
Met 24	-	expression tag
Thr 25	-	expression tag
Gly 26	-	expression tag
Gly 27	-	expression tag
Glu 28	-	expression tag
Glu 29	-	expression tag
Met 30	-	expression tag
Gly 31	-	expression tag
Arg 32	-	expression tag
Gly 33	-	expression tag
Ser 34	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	1
	Total formula weight	46177.6
Non-Polymers*	Number of molecules	2
	Total formula weight	205.0
All*	Total formula weight	46382.7

*Water molecules are not included.