4C8Q
Crystal structure of the yeast Lsm1-7-Pat1 complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | SM-LIKE PROTEIN LSM1 | polymer | 101 | 11935.7 | 1 | UniProt (P47017) Pfam (PF01423) In PDB | SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) | SPB8 PROTEIN, LSM1 |
| 2 | B | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2 | polymer | 105 | 12216.9 | 1 | UniProt (P38203) Pfam (PF01423) In PDB | SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) | SMALL NUCLEAR RIBONUCLEOPROTEIN D HOMOLOG SNP3, LSM2 |
| 3 | C | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 | polymer | 89 | 10039.3 | 1 | UniProt (P57743) Pfam (PF01423) In PDB | SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) | SMX4 PROTEIN, LSM3 |
| 4 | D | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM4 | polymer | 114 | 13035.5 | 1 | UniProt (P40070) Pfam (PF01423) In PDB | SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) | LSM4 |
| 5 | E | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 | polymer | 93 | 10433.0 | 1 | UniProt (P40089) Pfam (PF01423) In PDB | SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) | LSM5 |
| 6 | F | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM6 | polymer | 86 | 9406.6 | 1 | UniProt (Q06406) Pfam (PF01423) In PDB | SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) | LSM6 |
| 7 | G | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7 | polymer | 115 | 13027.0 | 1 | UniProt (P53905) Pfam (PF01423) In PDB | SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) | LSM7 |
| 8 | H | DNA TOPOISOMERASE 2-ASSOCIATED PROTEIN PAT1 | polymer | 328 | 37934.7 | 1 | UniProt (P25644) Pfam (PF09770) In PDB | SACCHAROMYCES CEREVISIAE (BAKER'S YEAST) | DECAPPING ACTIVATOR AND TRANSLATIONAL REPRESSOR PAT1, TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1, MRNA TURNOVER PROTEIN 1, PAT 1 |
| 9 | C, H | COBALT (II) ION | non-polymer | 58.9 | 2 | Chemie (CO) |
Sequence modifications
B: 2 - 95 (UniProt: P38203)
| PDB | External Database | Details |
|---|---|---|
| Ser -9 | - | expression tag |
| Glu -8 | - | expression tag |
| Asn -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Tyr -5 | - | expression tag |
| Phe -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Gly -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gly 0 | - | expression tag |
| Ser 1 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 118028.6 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 117.9 | |
| All* | Total formula weight | 118146.5 |
