3D18
Crystal structure of HLA-B*2709 complexed with a variant of the latent membrane protein 2 peptide (LMP2(L)) of epstein-barr virus
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | HLA class I histocompatibility antigen, B-27 alpha chain | polymer | 276 | 31952.2 | 1 | UniProt (P03989) Pfam (PF00129) Pfam (PF07654) UniProt (by SIFTS) (P01889) In PDB | Homo sapiens (Human) | MHC class I antigen B*27 |
| 2 | B | Beta-2-microglobulin | polymer | 100 | 11879.4 | 1 | UniProt (P61769) Pfam (PF07654) In PDB | Homo sapiens (Human) | |
| 3 | C | Latent membrane protein 2 | polymer | 9 | 1317.6 | 1 | Human gammaherpesvirus 4 | Terminal protein | |
| 4 | A, B, C | GLYCEROL | non-polymer | 92.1 | 6 | Chemie (GOL) | |||
| 5 | A | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 122.1 | 1 | Chemie (TRS) | |||
| 6 | B | 2-(N-MORPHOLINO)-ETHANESULFONIC ACID | non-polymer | 195.2 | 1 | Chemie (MES) | |||
| 7 | water | water | 18.0 | 370 | Chemie (HOH) |
Sequence modifications
A: 1 - 276 (UniProt: P03989)
B: 1 - 99 (UniProt: P61769)
| PDB | External Database | Details |
|---|---|---|
| His 116 | Asp 140 | variant |
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 45149.2 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 869.9 | |
| All* | Total formula weight | 46019.1 |
