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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

1QVF

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1023S ribosomal rnapolymer2922946034.41GenBank (3377779)Haloarcula marismortui
295S ribosomal RNApolymer12239318.41GenBank (3377779)Haloarcula marismortui
33Deacylated tRNA minihelixpolymer288954.41
4A50S ribosomal protein L2Ppolymer23925237.51UniProt (P20276)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Haloarcula marismortuiHmal2, HL4
5B50S ribosomal protein L3Ppolymer33737265.21UniProt (P20279)
Pfam (PF00297)
In PDB		Haloarcula marismortuiHmal3, HL1
6C50S ribosomal protein L4Epolymer24626442.11UniProt (P12735)
Pfam (PF00573)
In PDB		Haloarcula marismortuiHmal4, HL6
7D50S ribosomal protein L5Ppolymer17619420.51UniProt (P14124)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Haloarcula marismortuiHmal5, HL13
8E50S ribosomal protein L6Ppolymer17719830.51UniProt (P14135)
Pfam (PF00347)
In PDB		Haloarcula marismortuiHmal6, HL10
9F50S ribosomal protein L7Aepolymer11912600.81UniProt (P12743)
Pfam (PF01248)
In PDB		Haloarcula marismortuiHS6
10G50S RIBOSOMAL PROTEIN L10Epolymer34837213.81UniProt (P15825)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Haloarcula marismortuiACIDIC RIBOSOMAL PROTEIN P0 HOMOLOG, HMaL10
11HL10 Ribosomal Proteinpolymer16718022.51Pfam (PF00252)
UniProt (by SIFTS) (P60617)
In PDB		Haloarcula marismortui
12I50S ribosomal protein L13Ppolymer14516249.21UniProt (P29198)
Pfam (PF00572)
In PDB		Haloarcula marismortui
13J50S ribosomal protein L14Ppolymer13214216.21UniProt (P22450)
Pfam (PF00238)
In PDB		Haloarcula marismortuiHmal13
14K50S ribosomal protein L15Ppolymer16417874.21UniProt (P12737)
Pfam (PF00828)
In PDB		Haloarcula marismortuiHmal15, HL9
15LL15 Ribosomal Proteinpolymer19422856.61Pfam (PF00827)
UniProt (by SIFTS) (P60618)
In PDB		Haloarcula marismortui
16M50S ribosomal protein L18Ppolymer18620509.71UniProt (P14123)
Pfam (PF17144)
In PDB		Haloarcula marismortuiHmal18, HL12
17N50S ribosomal protein L18epolymer11512307.71UniProt (P12733)
Pfam (PF00828)
In PDB		Haloarcula marismortuiHL29, L19
18O50S ribosomal protein L19Epolymer14816631.31UniProt (P14119)
Pfam (PF01280)
In PDB		Haloarcula marismortuiHmal19, HL24
19P50S ribosomal protein L21epolymer9510436.61UniProt (P12734)
Pfam (PF01157)
In PDB		Haloarcula marismortuiHL31
20Q50S ribosomal protein L22Ppolymer15416835.71UniProt (P10970)
Pfam (PF00237)
In PDB		Haloarcula marismortuiHmal22, HL23
21R50S ribosomal protein L23Ppolymer849481.31UniProt (P12732)
Pfam (PF00276)
In PDB		Haloarcula marismortuiHmal23, HL25, L21
22S50S ribosomal protein L24Ppolymer11913539.81UniProt (P10972)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Haloarcula marismortuiHmal24, HL16, HL15
23T50S ribosomal protein L24Epolymer667233.71UniProt (P14116)
Pfam (PF01246)
In PDB		Haloarcula marismortuiHL21/HL22
24U50S ribosomal protein L29Ppolymer707758.71UniProt (P10971)
Pfam (PF00831)
In PDB		Haloarcula marismortuiHmal29, HL33
25V50S ribosomal protein L30Ppolymer15417062.91UniProt (P14121)
Pfam (PF00327)
In PDB		Haloarcula marismortuiHmal30, HL20, HL16
26W50S ribosomal protein L31epolymer9110253.41UniProt (P18138)
Pfam (PF01198)
In PDB		Haloarcula marismortuiL34, HL30
27X50S ribosomal protein L32Epolymer24026324.51UniProt (P12736)
Pfam (PF14520)
Pfam (PF01655)
In PDB		Haloarcula marismortuiHL5
28YL37Ae 50S ribosomal proteinpolymer738097.81Pfam (PF01780)
UniProt (by SIFTS) (P60619)
In PDB		Haloarcula marismortui
29Z50S ribosomal protein L37epolymer566199.01UniProt (P32410)
Pfam (PF01907)
In PDB		Haloarcula marismortuiL35e
30150S ribosomal protein L39epolymer485844.71UniProt (P22452)
Pfam (PF00832)
In PDB		Haloarcula marismortuiHL39e, HL46e
31250S ribosomal protein L44Epolymer9210815.21UniProt (P32411)
Pfam (PF00935)
In PDB		Haloarcula marismortuiLA, HLA
320, 2, J, 9, A...MAGNESIUM IONnon-polymer24.3119Chemie (MG)
330POTASSIUM IONnon-polymer39.12Chemie (K)
340, H, I, K, L...SODIUM IONnon-polymer23.086Chemie (NA)
35I, 2, 0, K, L...CHLORIDE IONnon-polymer35.522Chemie (CL)
36Z, 2, N, T, YCADMIUM IONnon-polymer112.45Chemie (CD)
37waterwater18.07739Chemie (HOH)
Sequence modifications
B: 1 - 337 (UniProt: P20279)
PDBExternal DatabaseDetails
-Pro 310deletion
Arg 310Phe 311conflict
O: 1 - 148 (UniProt: P14119)
PDBExternal DatabaseDetails
Lys 71Tyr 71conflict
1: 1 - 48 (UniProt: P22452)
PDBExternal DatabaseDetails
-Arg 31deletion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains31
Total formula weight1460868.5
Non-Polymers*Number of molecules234
Total formula weight6289.7
All*Total formula weight1467158.2
*Water molecules are not included.

219140

PDB entries from 2024-05-01

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