Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

9FH9
DownloadVisualize
BU of 9fh9 by Molmil
Structure of CyclinB1 N-terminus bound to the NCP
Descriptor: DNA (145-MER), G2/mitotic-specific cyclin-B1, Histone H2A type 3, ...
Authors:Young, R.V.C, Muhammad, R, Alfieri, C.
Deposit date:2024-05-27
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Spatial control of the APC/C ensures the rapid degradation of cyclin B1.
Embo J., 2024
9FGQ
DownloadVisualize
BU of 9fgq by Molmil
Structure of human APC3loop 375-381 bound to the NCP
Descriptor: Cell division cycle protein 27 homolog, DNA (131-MER), DNA (132-MER), ...
Authors:Young, R.V.C, Muhammad, R, Alfieri, C.
Deposit date:2024-05-24
Release date:2024-07-24
Last modified:2024-08-28
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Spatial control of the APC/C ensures the rapid degradation of cyclin B1.
Embo J., 2024
9C62
DownloadVisualize
BU of 9c62 by Molmil
P400 subcomplex of the native human TIP60 complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin, cytoplasmic 1, ...
Authors:Yang, Z, Mameri, A, Florez Ariza, A.J, Cote, J, Nogales, E.
Deposit date:2024-06-07
Release date:2024-08-21
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (5.28 Å)
Cite:Structural insights into the human NuA4/TIP60 acetyltransferase and chromatin remodeling complex.
Science, 385, 2024
9B3P
DownloadVisualize
BU of 9b3p by Molmil
The cryo-EM structure of the H2A.Z-H3.3 double-variant nucleosome
Descriptor: DNA (128-MER), Histone H2A.Z, Histone H2B 1.1, ...
Authors:Tan, D, Sokolova, V.
Deposit date:2024-03-19
Release date:2024-06-12
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structural and Biochemical Characterization of the Nucleosome Containing Variants H3.3 and H2A.Z.
Epigenomes, 8, 2024
8Z50
DownloadVisualize
BU of 8z50 by Molmil
Crystal structure of the ASF1-H3T-H4 complex
Descriptor: Histone H3.1t, Histone H4, Histone chaperone ASF1A
Authors:Xu, L.
Deposit date:2024-04-18
Release date:2024-07-03
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into instability of the nucleosome driven by histone variant H3T.
Biochem.Biophys.Res.Commun., 727, 2024
8YV8
DownloadVisualize
BU of 8yv8 by Molmil
Cryo-EM structure of CDCA7 bound to nucleosome including hemimethylated CpG site in Widom601 positioning sequence.
Descriptor: Cell division cycle-associated protein 7, DNA (132-MER), Histone H2A type 1-B/E, ...
Authors:Kikuchi, A, Shikimachi, R, Nishiyama, A, Funabiki, H, Arita, K.
Deposit date:2024-03-28
Release date:2024-07-31
Method:ELECTRON MICROSCOPY (3 Å)
Cite:CDCA7 is a hemimethylated DNA adaptor for the nucleosome remodeler HELLS
To Be Published
8YTI
DownloadVisualize
BU of 8yti by Molmil
Crystal Structure of Nucleosome-H1x Linker Histone Assembly (sticky-169a DNA fragment)
Descriptor: CALCIUM ION, CHLORIDE ION, DNA (169-MER), ...
Authors:Adhireksan, Z, Qiuye, B, Padavattan, S, Davey, C.A.
Deposit date:2024-03-26
Release date:2024-04-03
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Linker Histones Associate Heterogeneously with Nucleosomes in the Condensed State
To Be Published
8YJM
DownloadVisualize
BU of 8yjm by Molmil
Structure of human SPT16 MD-CTD and MCM2 HBD chaperoning a histone H3-H4 tetramer and a single chain H2B-H2A chimera
Descriptor: DNA replication licensing factor MCM2, FACT complex subunit SPT16, Histone H2B 1/2/3/4/6,Histone H2A type 1-D, ...
Authors:Gan, S.L, Yang, W.S, Xu, R.M.
Deposit date:2024-03-02
Release date:2024-03-20
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (4.15 Å)
Cite:Structure of a histone hexamer bound by the chaperone domains of SPT16 and MCM2.
Sci China Life Sci, 67, 2024
8YJF
DownloadVisualize
BU of 8yjf by Molmil
Structure of human SPT16 MD-CTD and MCM2 HBD chaperoning a histone H3-H4 tetramer and an H2A-H2B dimer
Descriptor: DNA replication licensing factor MCM2, FACT complex subunit SPT16, Histone H2A type 1-D, ...
Authors:Gan, S.L, Yang, W.S, Xu, R.M.
Deposit date:2024-03-01
Release date:2024-03-20
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (4.4 Å)
Cite:Structure of a histone hexamer bound by the chaperone domains of SPT16 and MCM2.
Sci China Life Sci, 67, 2024
8YBK
DownloadVisualize
BU of 8ybk by Molmil
Cryo-EM structure of the human nucleosome containing the H3.1 E97K mutant
Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Kimura, T, Hirai, S, Kujirai, T, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2024-02-14
Release date:2024-07-24
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (2.69 Å)
Cite:Cryo-EM structure and biochemical analyses of the nucleosome containing the cancer-associated histone H3 mutation E97K.
Genes Cells, 29, 2024
8YBJ
DownloadVisualize
BU of 8ybj by Molmil
Cryo-EM structure of human nucleosome core particle composed of the Widom 601 DNA sequence
Descriptor: DNA (145-MER), Histone H2A type 1-B/E, Histone H2B type 1-J, ...
Authors:Kimura, T, Hirai, S, Kujirai, T, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2024-02-14
Release date:2024-07-24
Last modified:2024-09-11
Method:ELECTRON MICROSCOPY (2.38 Å)
Cite:Cryo-EM structure and biochemical analyses of the nucleosome containing the cancer-associated histone H3 mutation E97K.
Genes Cells, 29, 2024
8XGC
DownloadVisualize
BU of 8xgc by Molmil
Structure of yeast replisome associated with FACT and histone hexamer, Composite map
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cell division control protein 45, Chromosome segregation in meiosis protein 3, ...
Authors:Li, N, Gao, Y, Yu, D, Gao, N, Zhai, Y.
Deposit date:2023-12-15
Release date:2024-02-14
Last modified:2024-04-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Parental histone transfer caught at the replication fork.
Nature, 627, 2024
8XBW
DownloadVisualize
BU of 8xbw by Molmil
The cryo-EM structure of the RAD51 N-terminal lobe domain bound to the histone H4 tail of the nucleosome
Descriptor: DNA (5'-D(P*AP*CP*CP*GP*CP*TP*TP*AP*AP*AP*CP*GP*CP*AP*CP*GP*TP*A)-3'), DNA (5'-D(P*TP*AP*CP*GP*TP*GP*CP*GP*TP*TP*TP*AP*AP*GP*CP*GP*GP*T)-3'), DNA repair protein RAD51 homolog 1, ...
Authors:Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-12-07
Release date:2024-03-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (2.89 Å)
Cite:Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8XBU
DownloadVisualize
BU of 8xbu by Molmil
The cryo-EM structure of the decameric RAD51 ring bound to the nucleosome with the linker DNA binding
Descriptor: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ...
Authors:Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-12-07
Release date:2024-03-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.24 Å)
Cite:Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8XBT
DownloadVisualize
BU of 8xbt by Molmil
The cryo-EM structure of the octameric RAD51 ring bound to the nucleosome with the linker DNA binding
Descriptor: DNA (153-MER), DNA (156-MER), DNA repair protein RAD51 homolog 1, ...
Authors:Shioi, T, Hatazawa, S, Ogasawara, M, Takizawa, Y, Kurumizaka, H.
Deposit date:2023-12-07
Release date:2024-03-27
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Cryo-EM structures of RAD51 assembled on nucleosomes containing a DSB site.
Nature, 628, 2024
8X7K
DownloadVisualize
BU of 8x7k by Molmil
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by activity-based chemical trapping strategy (adjacent H2AK13/15 dual-monoubiquitination)
Descriptor: DNA (143-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Ai, H.S, Tong, Z.B, Deng, Z.H, Pan, M, Liu, L.
Deposit date:2023-11-24
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168
Biorxiv, 2024
8X7J
DownloadVisualize
BU of 8x7j by Molmil
Cryo-EM structures of RNF168/UbcH5c-Ub/nucleosomes complex determined by activity-based chemical trapping strategy
Descriptor: DNA (144-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Ai, H.S, Tong, Z.B, Deng, Z.H, Pan, M, Liu, L.
Deposit date:2023-11-24
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (3.39 Å)
Cite:Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168
Biorxiv, 2024
8X7I
DownloadVisualize
BU of 8x7i by Molmil
Cryo-EM structures of RNF168/UbcH5c-Ub in complex with H2AK13Ub nucleosomes determined by intein-based E2-Ub-NCP conjugation strategy
Descriptor: DNA (147-MER), E3 ubiquitin-protein ligase RNF168, Histone H2A type 1-B/E, ...
Authors:Ai, H.S, Tong, Z.B, Deng, Z.H, Pan, M, Liu, L.
Deposit date:2023-11-24
Release date:2024-08-07
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Capturing Snapshots of Nucleosomal H2A K13/K15 Ubiquitination Mediated by the Monomeric E3 Ligase RNF168
Biorxiv, 2024
8X1C
DownloadVisualize
BU of 8x1c by Molmil
Structure of nucleosome-bound SRCAP-C in the ADP-bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Yu, J, Wang, Q, Yu, Z, Li, W, Wang, L, Xu, Y.
Deposit date:2023-11-06
Release date:2024-03-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into histone exchange by human SRCAP complex.
Cell Discov, 10, 2024
8X19
DownloadVisualize
BU of 8x19 by Molmil
Structure of nucleosome-bound SRCAP-C in the ADP-BeFx-bound state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Yu, J, Wang, Q, Yu, Z, Li, W, Wang, L, Xu, Y.
Deposit date:2023-11-06
Release date:2024-03-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into histone exchange by human SRCAP complex.
Cell Discov, 10, 2024
8X15
DownloadVisualize
BU of 8x15 by Molmil
Structure of nucleosome-bound SRCAP-C in the apo state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Actin, ...
Authors:Yu, J, Wang, Q, Yu, Z, Li, W, Wang, L, Xu, Y.
Deposit date:2023-11-06
Release date:2024-03-06
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural insights into histone exchange by human SRCAP complex.
Cell Discov, 10, 2024
8WHB
DownloadVisualize
BU of 8whb by Molmil
Structure of nucleosome core particle of Arabidopsis thaliana
Descriptor: DNA (antisense strand), DNA (sense strand), Histone H2A.6, ...
Authors:Liu, Y, Zhang, Z, Du, J.
Deposit date:2023-09-23
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.17 Å)
Cite:Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WHA
DownloadVisualize
BU of 8wha by Molmil
Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Liu, Y, Zhang, Z, Du, J.
Deposit date:2023-09-22
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (4.05 Å)
Cite:Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WH9
DownloadVisualize
BU of 8wh9 by Molmil
Structure of DDM1-nucleosome complex in ADP-BeFx state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Liu, Y, Zhang, Z, Du, J.
Deposit date:2023-09-22
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.31 Å)
Cite:Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024
8WH8
DownloadVisualize
BU of 8wh8 by Molmil
Structure of DDM1-nucleosome complex in ADP state
Descriptor: ADENOSINE-5'-DIPHOSPHATE, ATP-dependent DNA helicase DDM1, DNA (antisense strand), ...
Authors:Liu, Y, Zhang, Z, Du, J.
Deposit date:2023-09-22
Release date:2024-04-17
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
Nat.Plants, 10, 2024

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon