PDB: 14 resultsInfo pagesStatus searchChemie searchBIRD

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6N2T	Ternary complex crystal structure of DNA polymerase Beta with 5-hydroxymethyl-dC (5-hmC) at the templating position Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]guanosine, DNA (5'-D(*CP*CP*GP*AP*CP*(5HC)P*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*C)-3'), ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2018-11-14 Release date: 2019-03-27 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Molecular basis for the faithful replication of 5-methylcytosine and its oxidized forms by DNA polymerase beta. J.Biol.Chem., 294, 2019
4HLI	DNA dodecamer containing 5-hydroxymethyl-cytosine Descriptor: DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, POTASSIUM ION Authors: Spingler, B, Renciuk, D, Vorlickova, M. Deposit date: 2012-10-17 Release date: 2013-09-04 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine. Nucleic Acids Res., 41, 2013
4GLH	DNA dodecamer containing 5-hydroxymethyl cytosine Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5HC)P*GP*CP*G)-3'), POTASSIUM ION Authors: Spingler, B, Renciuk, D, Vorlickova, M. Deposit date: 2012-08-14 Release date: 2013-08-28 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.662 Å) Cite: Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine. Nucleic Acids Res., 41, 2013
4GLG	DNA dodecamer containing 5-methyl cytosine Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(5CM)P*GP*CP*G)-3') Authors: Spingler, B, Renciuk, D, Vorlickova, M. Deposit date: 2012-08-14 Release date: 2013-08-28 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine. Nucleic Acids Res., 41, 2013
4GJU	5-Methylcytosine modified DNA oligomer Descriptor: 5-Methylcytosine modified DNA oligomer, MAGNESIUM ION Authors: Spingler, B, Renciuk, D, Vorlickova, M. Deposit date: 2012-08-10 Release date: 2013-08-28 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.412 Å) Cite: Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine. Nucleic Acids Res., 41, 2013
4GLC	DNA dodecamer containing 5-hydroxymethyl-cytosine Descriptor: DNA (5'-D(*CP*GP*(5HC)P*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') Authors: Spingler, B, Renciuk, D, Vorlickova, M. Deposit date: 2012-08-14 Release date: 2013-08-28 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.831 Å) Cite: Crystal structures of B-DNA dodecamer containing the epigenetic modifications 5-hydroxymethylcytosine or 5-methylcytosine. Nucleic Acids Res., 41, 2013
1QKJ	T4 Phage B-Glucosyltransferase, Substrate Binding and Proposed Catalytic Mechanism Descriptor: BETA-GLUCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE Authors: Morera, S, Imberty, I, Aschke-Sonnenborn, U, Ruger, W, Freemont, P.S. Deposit date: 1999-07-22 Release date: 1999-07-28 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: T4 Phage Beta-Glucosyltransferase: Substrate Binding and Proposed Catalytic Mechanism J.Mol.Biol., 292, 1999
1C3J	T4 PHAGE BETA-GLUCOSYLTRANSFERASE: SUBSTRATE BINDING AND PROPOSED CATALYTIC MECHANISM Descriptor: BETA-GLUCOSYLTRANSFERASE, URIDINE-5'-DIPHOSPHATE Authors: Morera, S, Imberty, A, Aschke-Sonnenborn, U, Ruger, W, Freemont, P.S. Deposit date: 1999-07-28 Release date: 1999-08-09 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.88 Å) Cite: T4 phage beta-glucosyltransferase: substrate binding and proposed catalytic mechanism. J.Mol.Biol., 292, 1999
4OKY	Crystal structure of PvuRts1I, a 5-hydroxymethylcytosine DNA restriction endonuclease Descriptor: Restriction endonuclease PvuRts1 I Authors: Wang, C.L, Shao, C, Zang, J.Y. Deposit date: 2014-01-23 Release date: 2014-09-10 Last modified: 2014-12-17 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural basis for the substrate selectivity of PvuRts1I, a 5-hydroxymethylcytosine DNA restriction endonuclease Acta Crystallogr.,Sect.D, 70, 2014
1Y8Z	alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a HMU base at 1.9 A resolution Descriptor: 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*G)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', CHLORIDE ION, ... Authors: Lariviere, L, Sommer, N, Morera, S. Deposit date: 2004-12-14 Release date: 2005-08-30 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase. J.Mol.Biol., 352, 2005
1XV5	alpha-glucosyltransferase (AGT) in complex with UDP Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA alpha-glucosyltransferase, ... Authors: Lariviere, L, Sommer, N, Morera, S. Deposit date: 2004-10-27 Release date: 2005-08-30 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase. J.Mol.Biol., 352, 2005
1YA6	alpha-glucosyltransferase in complex with UDP and a 13-mer DNA containing a central A:G mismatch Descriptor: 5'-D(*AP*TP*AP*CP*TP*AP*AP*GP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*T)-3', COBALT HEXAMMINE(III), ... Authors: Lariviere, L, Sommer, N, Morera, S. Deposit date: 2004-12-17 Release date: 2005-08-30 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase. J.Mol.Biol., 352, 2005
1Y6G	alpha-glucosyltransferase in complex with UDP and a 13_mer DNA containing a HMU base at 2.8 A resolution Descriptor: 1,2-ETHANEDIOL, 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*T)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(5HU)P*AP*GP*AP*TP*AP*G)-3', ... Authors: Lariviere, L, Sommer, N, Morera, S. Deposit date: 2004-12-06 Release date: 2005-08-30 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase. J.Mol.Biol., 352, 2005
1Y6F	alpha-glucosyltransferase in complex with UDP-glucose and DNA containing an abasic site Descriptor: 5'-D(*CP*TP*AP*TP*CP*TP*GP*AP*GP*TP*AP*TP*C)-3', 5'-D(*GP*AP*TP*AP*CP*TP*(3DR)P*AP*GP*AP*TP*AP*G)-3', DI(HYDROXYETHYL)ETHER, ... Authors: Lariviere, L, Sommer, N, Morera, S. Deposit date: 2004-12-06 Release date: 2005-08-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structural evidence of a passive base-flipping mechanism for AGT, an unusual GT-B glycosyltransferase. J.Mol.Biol., 352, 2005