Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6QV9
DownloadVisualize
BU of 6qv9 by Molmil
Staphylococcus aureus superoxide dismutase SodA double mutant
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Basle, A, Barwinska-Sendra, A, Waldron, K.
Deposit date:2019-03-01
Release date:2020-03-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:An evolutionary path to altered cofactor specificity in a metalloenzyme.
Nat Commun, 11, 2020
6DQY
DownloadVisualize
BU of 6dqy by Molmil
Crystal Structure analysis of Superoxide Dismutase from Trichoderma reesei
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Mendoza, E.R, Stelmastchuk, L.B.F, Ferreira Junior, J.R.S, Garratt, R.C.
Deposit date:2018-06-11
Release date:2018-12-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Superoxide Dismutase from Trichoderma reesei
To Be Published
1UER
DownloadVisualize
BU of 1uer by Molmil
Crystal structure of Porphyromonas gingivalis SOD
Descriptor: FE (III) ION, superoxide dismutase
Authors:Yamakura, F, Sugio, S, Hiraoka, B.Y, Yokota, T, Ohmori, D.
Deposit date:2003-05-20
Release date:2004-05-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Pronounced conversion of the metal-specific activity of superoxide dismutase from Porphyromonas gingivalis by the mutation of a single amino acid (Gly155Thr) located apart from the active site
Biochemistry, 42, 2003
6GSB
DownloadVisualize
BU of 6gsb by Molmil
Sphingobacterium sp. T2 manganese superoxide dismutase catalyses the oxidative demethylation of polymeric lignin via generation of hydroxyl radical
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Rashid, G.M, Zhang, X, Wilkinson, R.C, Fulop, V, Cottyn, B, Baumberger, S, Bugg, D.H.
Deposit date:2018-06-13
Release date:2018-10-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Sphingobacterium sp. T2 Manganese Superoxide Dismutase Catalyzes the Oxidative Demethylation of Polymeric Lignin via Generation of Hydroxyl Radical.
ACS Chem. Biol., 13, 2018
6QZM
DownloadVisualize
BU of 6qzm by Molmil
H30 MnSOD-3 Mutant I
Descriptor: MANGANESE (II) ION, SULFATE ION, Superoxide dismutase [Mn] 2, ...
Authors:Bonetta, R, Trinh, C.H, Hunter, G.J, Hunter, T.
Deposit date:2019-03-11
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:H30 MnSOD-3 Mutant II
To Be Published
6HIV
DownloadVisualize
BU of 6hiv by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete mitoribosome
Descriptor: 12S rRNA, 50S ribosomal protein L13, putative, ...
Authors:Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boerhringer, D, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-10-03
Last modified:2018-11-07
Method:ELECTRON MICROSCOPY (7.8 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
6QZN
DownloadVisualize
BU of 6qzn by Molmil
H30 MnSOD-3 Mutant III
Descriptor: MANGANESE (II) ION, SULFATE ION, Superoxide dismutase [Mn] 2, ...
Authors:Bonetta, R, Trinh, C.H, Hunter, G.J, Hunter, T.
Deposit date:2019-03-11
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:H30 MnSOD-3 Mutant II
To Be Published
8AVN
DownloadVisualize
BU of 8avn by Molmil
Mutant of Superoxide dismutase SodFM1 from CPR Parcubacteria Wolfebacteria
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Basle, A, Barwinska-Sendra, A, Sendra, K.M, Waldron, K.
Deposit date:2022-08-26
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:An ancient metalloenzyme evolves through metal preference modulation.
Nat Ecol Evol, 7, 2023
8AVK
DownloadVisualize
BU of 8avk by Molmil
Superoxide dismutase SodFM1 from CPR Parkubacteria Wolfebacteria
Descriptor: FE (III) ION, Superoxide dismutase
Authors:Basle, A, Barwinska-Sendra, A, Sendra, K.M, Waldron, K.
Deposit date:2022-08-26
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:An ancient metalloenzyme evolves through metal preference modulation.
Nat Ecol Evol, 7, 2023
8AVM
DownloadVisualize
BU of 8avm by Molmil
Mutant of Superoxide Dismutase sodfm2 from Bacteroides fragilis
Descriptor: FE (III) ION, Superoxide dismutase [Fe]
Authors:Basle, A, Barwinska-Sendra, A, Sendra, K.M, Waldron, K.
Deposit date:2022-08-26
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:An ancient metalloenzyme evolves through metal preference modulation.
Nat Ecol Evol, 7, 2023
8AVL
DownloadVisualize
BU of 8avl by Molmil
Superoxide dismutase SodFM2 from Bacteroides fragilis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, FE (III) ION, Superoxide dismutase [Fe]
Authors:Basle, A, Barwinska-Sendra, A, Sendra, K.M, Waldron, K.
Deposit date:2022-08-26
Release date:2023-04-19
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:An ancient metalloenzyme evolves through metal preference modulation.
Nat Ecol Evol, 7, 2023
6GSC
DownloadVisualize
BU of 6gsc by Molmil
Sphingobacterium sp. T2 manganese superoxide dismutase catalyses the oxidative demethylation of polymeric lignin via generation of hydroxyl radical
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Rashid, G.M.M, Zhang, X, Wilkinson, R.C, Fulop, V, Cottyn, B, Baumberger, S, Bugg, T.D.H.
Deposit date:2018-06-13
Release date:2018-10-03
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Sphingobacterium sp. T2 Manganese Superoxide Dismutase Catalyzes the Oxidative Demethylation of Polymeric Lignin via Generation of Hydroxyl Radical.
ACS Chem. Biol., 13, 2018
6HIY
DownloadVisualize
BU of 6hiy by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the body of the small mitoribosomal subunit in complex with mt-IF-3
Descriptor: 9S rRNA, MAGNESIUM ION, SPERMIDINE, ...
Authors:Ramrath, D.J.F, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, D, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-09-26
Last modified:2019-12-11
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
3AK2
DownloadVisualize
BU of 3ak2 by Molmil
Superoxide dismutase from Aeropyrum pernix K1, Mn-bound form
Descriptor: 1,2-ETHANEDIOL, MANGANESE (II) ION, Superoxide dismutase [Mn/Fe]
Authors:Nakamura, T, Uegaki, K.
Deposit date:2010-06-30
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.35 Å)
Cite:Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability
Febs J., 278, 2011
1UES
DownloadVisualize
BU of 1ues by Molmil
Crystal structure of Porphyromonas gingivalis SOD
Descriptor: MANGANESE (II) ION, superoxide dismutase
Authors:Yamakura, F, Sugio, S, Hiraoka, B.Y, Yokota, T, Ohmori, D.
Deposit date:2003-05-20
Release date:2004-05-20
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Pronounced conversion of the metal-specific activity of superoxide dismutase from Porphyromonas gingivalis by the mutation of a single amino acid (Gly155Thr) located apart from the active site
Biochemistry, 42, 2003
6QV8
DownloadVisualize
BU of 6qv8 by Molmil
Staphylococcus aureus superoxide dismutase SodM double mutant
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Basle, A, Barwinska-Sendra, A, Waldron, K.
Deposit date:2019-03-01
Release date:2020-03-25
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An evolutionary path to altered cofactor specificity in a metalloenzyme.
Nat Commun, 11, 2020
5MRC
DownloadVisualize
BU of 5mrc by Molmil
Structure of the yeast mitochondrial ribosome - Class A
Descriptor: 15S ribosomal RNA, 21S ribosomal RNA, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Desai, N, Brown, A, Amunts, A, Ramakrishnan, V.
Deposit date:2016-12-22
Release date:2017-02-15
Last modified:2018-02-07
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:The structure of the yeast mitochondrial ribosome.
Science, 355, 2017
5N57
DownloadVisualize
BU of 5n57 by Molmil
Staphylococcus aureus cambialistic superoxide dismutase SodM
Descriptor: MANGANESE (II) ION, Superoxide dismutase
Authors:Barwinska-Sendra, A, Basle, A, Waldron, K.
Deposit date:2017-02-13
Release date:2018-03-07
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A charge polarization model for the metal-specific activity of superoxide dismutases.
Phys Chem Chem Phys, 20, 2018
3AK3
DownloadVisualize
BU of 3ak3 by Molmil
Superoxide dismutase from Aeropyrum pernix K1, Fe-bound form
Descriptor: 1,2-ETHANEDIOL, FE (III) ION, Superoxide dismutase [Mn/Fe]
Authors:Nakamura, T, Uegaki, K.
Deposit date:2010-06-30
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Crystal structure of the cambialistic superoxide dismutase from Aeropyrum pernix K1 - insights into the enzyme mechanism and stability
Febs J., 278, 2011
1VAR
DownloadVisualize
BU of 1var by Molmil
MITOCHONDRIAL MANGANESE SUPEROXIDE DISMUTASE VARIANT WITH ILE 58 REPLACED BY THR
Descriptor: MANGANESE (III) ION, MANGANESE SUPEROXIDE DISMUTASE
Authors:Borgstahl, G.E.O, Parge, H.E, Tainer, J.A.
Deposit date:1996-01-04
Release date:1996-06-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Human mitochondrial manganese superoxide dismutase polymorphic variant Ile58Thr reduces activity by destabilizing the tetrameric interface.
Biochemistry, 35, 1996
6S0D
DownloadVisualize
BU of 6s0d by Molmil
H30 MnSOD-3 Mutant II
Descriptor: MANGANESE (II) ION, SULFATE ION, Superoxide dismutase [Mn] 2, ...
Authors:Bonetta, R, Trinh, C.H, Hunter, G.J, Hunter, T.
Deposit date:2019-06-14
Release date:2020-04-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:H30 MnSOD-3 Mutant II
To Be Published
6HIW
DownloadVisualize
BU of 6hiw by Molmil
Cryo-EM structure of the Trypanosoma brucei mitochondrial ribosome - This entry contains the complete small mitoribosomal subunit in complex with mt-IF-3
Descriptor: 9S rRNA, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Ramrath, D, Niemann, M, Leibundgut, M, Bieri, P, Prange, C, Horn, E.K, Leitner, A, Boehringer, D, Schneider, A, Ban, N.
Deposit date:2018-08-31
Release date:2018-09-26
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
Science, 362, 2018
8BHX
DownloadVisualize
BU of 8bhx by Molmil
High resolution structure of the iron Superoxide Dismutase from Thermobifida fusca
Descriptor: BORIC ACID, FE (III) ION, Superoxide dismutase
Authors:Leiros, H.-K.S, Sorlie, M.
Deposit date:2022-11-01
Release date:2023-09-27
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Initial characterization of an iron superoxide dismutase from Thermobifida fusca.
J.Biol.Inorg.Chem., 28, 2023
1UNF
DownloadVisualize
BU of 1unf by Molmil
The crystal structure of the eukaryotic FeSOD from Vigna unguiculata suggests a new enzymatic mechanism
Descriptor: FE (III) ION, IRON SUPEROXIDE DISMUTASE
Authors:Munoz, I.G, Moran, J.F, Becana, M, Montoya, G.
Deposit date:2003-09-10
Release date:2004-10-27
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:The Crystal Structure of an Eukaryotic Iron Superoxide Dismutase Suggests Intersubunit Cooperation During Catalysis
Protein Sci., 14, 2005
3BFR
DownloadVisualize
BU of 3bfr by Molmil
The crystal structure of Sod2 from Saccharomyces cerevisiae
Descriptor: MANGANESE (III) ION, Superoxide dismutase [Mn]
Authors:He, Y.-X, Zhao, M.-X, Zhou, C.
Deposit date:2007-11-23
Release date:2008-12-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Structures of native and Fe-substituted SOD2 from Saccharomyces cerevisiae
Acta Crystallogr.,Sect.F, 67, 2011

225158

PDB entries from 2024-09-18

PDB statisticsPDBj update infoContact PDBjnumon