Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4YVN
DownloadVisualize
BU of 4yvn by Molmil
Crystal structure of CotA laccase complexed with ABTS at a novel binding site
Descriptor: 1,2-ETHANEDIOL, 3-ETHYL-2-[(2Z)-2-(3-ETHYL-6-SULFO-1,3-BENZOTHIAZOL-2(3H)-YLIDENE)HYDRAZINO]-6-SULFO-3H-1,3-BENZOTHIAZOL-1-IUM, COPPER (II) ION, ...
Authors:Liu, Z.C, Xie, T, Wang, G.G.
Deposit date:2015-03-20
Release date:2016-03-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of CotA laccase complexed with 2,2-azinobis-(3-ethylbenzothiazoline-6-sulfonate) at a novel binding site
Acta Crystallogr.,Sect.F, 72, 2016
4YSC
DownloadVisualize
BU of 4ysc by Molmil
Completely oxidized structure of copper nitrite reductase from Alcaligenes faecalis
Descriptor: CHLORIDE ION, COPPER (II) ION, Copper-containing nitrite reductase
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-03-09
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
4YSR
DownloadVisualize
BU of 4ysr by Molmil
Structure of copper nitrite reductase from Geobacillus thermodenitrificans - 16.6 MGy
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-02-24
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.34 Å)
Cite:Redox-coupled structural changes in nitrite reductase revealed by serial femtosecond and microfocus crystallography
J.Biochem., 159, 2016
4YSE
DownloadVisualize
BU of 4yse by Molmil
High resolution synchrotron structure of copper nitrite reductase from Alcaligenes faecalis
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETIC ACID, COPPER (II) ION, ...
Authors:Fukuda, Y, Tse, K.M, Suzuki, M, Diederichs, K, Hirata, K, Nakane, T, Sugahara, M, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Matsumura, H, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-03-17
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
6K3D
DownloadVisualize
BU of 6k3d by Molmil
Structure of multicopper oxidase mutant
Descriptor: COPPER (II) ION, CU-O-CU LINKAGE, Multicopper oxidase
Authors:Sakuraba, H, Ohshida, T, Satomura, T, Yoneda, K, Ohshima, T.
Deposit date:2019-05-17
Release date:2020-05-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.919 Å)
Cite:Activity enhancement of multicopper oxidase from a hyperthermophile via directed evolution, and its application as the element of a high performance biocathode.
J.Biotechnol., 325, 2021
6KLI
DownloadVisualize
BU of 6kli by Molmil
Crystal Structure of the Zea Mays laccase 3 complexed with sinapyl
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-[(1E)-3-hydroxyprop-1-en-1-yl]-2,6-dimethoxyphenol, ...
Authors:Xie, T, Liu, Z.C, Wang, G.G.
Deposit date:2019-07-30
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural basis for monolignol oxidation by a maize laccase.
Nat.Plants, 6, 2020
6KLJ
DownloadVisualize
BU of 6klj by Molmil
Crystal Structure of the Zea Mays laccase 3 complexed with coniferyl
Descriptor: (2E)-3-(4-hydroxy-3-methoxyphenyl)prop-2-enal, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Xie, T, Liu, Z.C, Wang, G.G.
Deposit date:2019-07-30
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.998 Å)
Cite:Structural basis for monolignol oxidation by a maize laccase.
Nat.Plants, 6, 2020
6KNF
DownloadVisualize
BU of 6knf by Molmil
CryoEM map and model of Nitrite Reductase at pH 6.2
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase
Authors:Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
Deposit date:2019-08-05
Release date:2020-08-12
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
4ZK8
DownloadVisualize
BU of 4zk8 by Molmil
Copper-containing nitrite reductase from thermophilic bacterium Geobacillus thermodenitrificans (Re-refined)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Fukuda, Y, Inoue, T.
Deposit date:2015-04-30
Release date:2015-05-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.15 Å)
Cite:Structural insights into the function of a thermostable copper-containing nitrite reductase
J.Biochem., 155, 2014
6KLG
DownloadVisualize
BU of 6klg by Molmil
Crystal Structure of the Zea Mays laccase 3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (II) ION, ...
Authors:Xie, T, Liu, Z.C, Wang, G.G.
Deposit date:2019-07-30
Release date:2020-01-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural basis for monolignol oxidation by a maize laccase.
Nat.Plants, 6, 2020
6KNG
DownloadVisualize
BU of 6kng by Molmil
CryoEM map and model of Nitrite Reductase at pH 8.1
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase
Authors:Adachi, N, Yamaguchi, T, Moriya, T, Kawasaki, M, Koiwai, K, Shinoda, A, Yamada, Y, Yumoto, F, Kohzuma, T, Senda, T.
Deposit date:2019-08-05
Release date:2020-08-12
Last modified:2021-08-25
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:2.85 and 2.99 angstrom resolution structures of 110 kDa nitrite reductase determined by 200 kV cryogenic electron microscopy.
J.Struct.Biol., 213, 2021
5A7E
DownloadVisualize
BU of 5a7e by Molmil
Crystallographic Structural Determination of a Trigonal Laccase from Coriolopsis Gallica (CgL) to 1.5 A resolution
Descriptor: ACETATE ION, COPPER (II) ION, CORIOLOPSIS GALLICA LACCASE, ...
Authors:Ruiz-Arellano, R.R, Diaz, A, Ayala, M, De la Mora, E, Rudino-Pinera, E.
Deposit date:2015-07-03
Release date:2016-05-25
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Metal Site Delocalization Observed in a Model Multicopper Oxidase: An Insight Into Water Release Mechanism
To be Published
5AFA
DownloadVisualize
BU of 5afa by Molmil
Crystal structure of Laccase from Thermus thermophilus HB27 complexed with Ag, crystal of the holoenzyme soaked for 30 m in 5 mM AgNO3 at 278 K.
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, ...
Authors:Jimenez-Arroyo, N, Rudino-Pinera, E.
Deposit date:2015-01-19
Release date:2016-02-17
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.193 Å)
Cite:Structural Function of the Methionine-Rich Beta-Hairpin in the Laccase for T. Thermophilus.
To be Published
5AKR
DownloadVisualize
BU of 5akr by Molmil
ATOMIC RESOLUTION STRUCTURE OF NITRITE BOUND STATE OF THE ACHROMOBACTER CYCLOCLASTES CU NITRITE REDUCTASE AT 0.87 A RESOLUTION
Descriptor: ACETATE ION, COPPER (II) ION, COPPER-CONTAINING NITRITE REDUCTASE, ...
Authors:Blakeley, M.P, Hasnain, S.S, Antonyuk, S.V.
Deposit date:2015-03-05
Release date:2015-07-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (0.87 Å)
Cite:Sub-Atomic Resolution X-Ray Crystallography and Neutron Crystallography: Promise, Challenges and Potential.
Iucrj, 2, 2015
6L46
DownloadVisualize
BU of 6l46 by Molmil
High-resolution neutron and X-ray joint refined structure of copper-containing nitrite reductase from Geobacillus thermodenitrificans
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, COPPER (II) ION, ...
Authors:Fukuda, Y, Hirano, Y, Kusaka, K, Inoue, T, Tamada, T.
Deposit date:2019-10-16
Release date:2020-02-12
Last modified:2024-04-03
Method:NEUTRON DIFFRACTION (1.3 Å), X-RAY DIFFRACTION
Cite:High-resolution neutron crystallography visualizes an OH-bound resting state of a copper-containing nitrite reductase.
Proc.Natl.Acad.Sci.USA, 117, 2020
6MF2
DownloadVisualize
BU of 6mf2 by Molmil
Improved Model of Human Coagulation Factor VIII
Descriptor: CALCIUM ION, COPPER (I) ION, Coagulation factor VIII, ...
Authors:Smith, I.W, Spiegel, P.C.
Deposit date:2018-09-08
Release date:2019-09-11
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.609364 Å)
Cite:The 3.2 angstrom structure of a bioengineered variant of blood coagulation factor VIII indicates two conformations of the C2 domain.
J.Thromb.Haemost., 18, 2020
6MF0
DownloadVisualize
BU of 6mf0 by Molmil
Crystal Structure Determination of Human/Porcine Chimera Coagulation Factor VIII
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, COPPER (I) ION, ...
Authors:Smith, I.W, Spiegel, P.C.
Deposit date:2018-09-07
Release date:2019-09-11
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (3.19999886 Å)
Cite:The 3.2 angstrom structure of a bioengineered variant of blood coagulation factor VIII indicates two conformations of the C2 domain.
J.Thromb.Haemost., 18, 2020
1ZDS
DownloadVisualize
BU of 1zds by Molmil
Crystal Structure of Met150Gly AfNiR with Acetamide Bound
Descriptor: ACETAMIDE, COPPER (II) ION, Copper-containing nitrite reductase
Authors:Wijma, H.J, MacPherson, I.S, Alexandre, M, Diederix, R.E.M, Canters, G.W, Murphy, M.E.P, Verbeet, M.P.
Deposit date:2005-04-14
Release date:2006-03-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:A rearranging ligand enables allosteric control of catalytic activity in copper-containing nitrite reductase.
J.Mol.Biol., 358, 2006
1ZDQ
DownloadVisualize
BU of 1zdq by Molmil
Crystal Structure of Met150Gly AfNiR with Methylsulfanyl Methane Bound
Descriptor: (METHYLSULFANYL)METHANE, COPPER (II) ION, Copper-containing nitrite reductase
Authors:Wijma, H.J, MacPherson, I.S, Alexandre, M, Diederix, R.E.M, Canters, G.W, Murphy, M.E.P, Verbeet, M.P.
Deposit date:2005-04-14
Release date:2006-03-28
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A rearranging ligand enables allosteric control of catalytic activity in copper-containing nitrite reductase.
J.Mol.Biol., 358, 2006
1ZPU
DownloadVisualize
BU of 1zpu by Molmil
Crystal Structure of Fet3p, a Multicopper Oxidase that Functions in Iron Import
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, COPPER (I) ION, ...
Authors:Taylor, A.B, Stoj, C.S, Ziegler, L, Kosman, D.J, Hart, P.J.
Deposit date:2005-05-17
Release date:2005-10-04
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The copper-iron connection in biology: Structure of the metallo-oxidase Fet3p.
Proc.Natl.Acad.Sci.Usa, 102, 2005
1ZV2
DownloadVisualize
BU of 1zv2 by Molmil
Cu-containing nitrite reductase
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, MAGNESIUM ION
Authors:Jacobson, F, Guo, H, Olesen, K, Okvist, M, Neutze, R, Sjolin, L.
Deposit date:2005-06-01
Release date:2005-06-21
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structures of the oxidized and reduced forms of nitrite reductase from Rhodobacter sphaeroides 2.4.3 at high pH: changes in the interactions of the type 2 copper.
Acta Crystallogr.,Sect.D, 61, 2005
2AFN
DownloadVisualize
BU of 2afn by Molmil
STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE AND A COPPER SITE MUTANT, M150E, THAT CONTAINS ZINC
Descriptor: COPPER (II) ION, NITRITE REDUCTASE
Authors:Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:1995-07-03
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc.
Biochemistry, 34, 1995
2A3T
DownloadVisualize
BU of 2a3t by Molmil
Cu-containing nitrite reductase
Descriptor: COPPER (II) ION, Copper-containing nitrite reductase, MAGNESIUM ION
Authors:Jacobson, F, Guo, H, Olesen, K, Okvist, M, Neutze, R, Sjolin, L.
Deposit date:2005-06-27
Release date:2005-08-02
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structures of the oxidized and reduced forms of nitrite reductase from Rhodobacter sphaeroides 2.4.3 at high pH: changes in the interactions of the type 2 copper.
Acta Crystallogr.,Sect.D, 61, 2005
2AVF
DownloadVisualize
BU of 2avf by Molmil
Crystal Structure of C-terminal Desundecapeptide Nitrite Reductase from Achromobacter cycloclastes
Descriptor: CHLORIDE ION, COPPER (II) ION, Copper-containing nitrite reductase
Authors:Li, H.T, Chang, T, Chang, W.C, Chen, C.J, Liu, M.Y, Gui, L.L, Zhang, J.P, An, X.M, Chang, W.R.
Deposit date:2005-08-30
Release date:2005-12-20
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of C-terminal desundecapeptide nitrite reductase from Achromobacter cycloclastes
Biochem.Biophys.Res.Commun., 338, 2005
2B08
DownloadVisualize
BU of 2b08 by Molmil
Reduced acetamide-bound M150G Nitrite Reductase from Alcaligenes faecalis
Descriptor: ACETAMIDE, COPPER (I) ION, Copper-containing nitrite reductase
Authors:Wijma, H.J, MacPherson, I.S, Farver, O, Tocheva, E.I, Pecht, I, Verbeet, M.Ph, Murphy, M.E.P, Canters, G.W.
Deposit date:2005-09-13
Release date:2006-09-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Effect of the methionine ligand on the reorganization energy of the type-1 copper site of nitrite reductase.
J.Am.Chem.Soc., 129, 2007

218853

PDB entries from 2024-04-24

PDB statisticsPDBj update infoContact PDBjnumon