8W9Z

The cryo-EM structure of the Nicotiana tabacum PEP-PAP

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000428	cellular_component	DNA-directed RNA polymerase complex
A	0003677	molecular_function	DNA binding
A	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
A	0005737	cellular_component	cytoplasm
A	0006351	biological_process	DNA-templated transcription
A	0009507	cellular_component	chloroplast
A	0016779	molecular_function	nucleotidyltransferase activity
A	0034062	molecular_function	5'-3' RNA polymerase activity
B	0000428	cellular_component	DNA-directed RNA polymerase complex
B	0003677	molecular_function	DNA binding
B	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
B	0006351	biological_process	DNA-templated transcription
B	0009507	cellular_component	chloroplast
B	0016779	molecular_function	nucleotidyltransferase activity
B	0034062	molecular_function	5'-3' RNA polymerase activity
C	0000287	molecular_function	magnesium ion binding
C	0000428	cellular_component	DNA-directed RNA polymerase complex
C	0003677	molecular_function	DNA binding
C	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
C	0006351	biological_process	DNA-templated transcription
C	0008270	molecular_function	zinc ion binding
C	0009507	cellular_component	chloroplast
C	0016779	molecular_function	nucleotidyltransferase activity
C	0046872	molecular_function	metal ion binding
E	0009507	cellular_component	chloroplast
E	0042793	biological_process	plastid transcription
G	0004784	molecular_function	superoxide dismutase activity
G	0016491	molecular_function	oxidoreductase activity
G	0019430	biological_process	removal of superoxide radicals
G	0046872	molecular_function	metal ion binding
H	0009507	cellular_component	chloroplast
H	0042793	biological_process	plastid transcription
H	0045893	biological_process	positive regulation of DNA-templated transcription
I	0009658	biological_process	chloroplast organization
I	0016301	molecular_function	kinase activity
I	0042644	cellular_component	chloroplast nucleoid
I	0042793	biological_process	plastid transcription
J	0008168	molecular_function	methyltransferase activity
J	0032259	biological_process	methylation
L	0004784	molecular_function	superoxide dismutase activity
L	0016491	molecular_function	oxidoreductase activity
L	0019430	biological_process	removal of superoxide radicals
L	0042644	cellular_component	chloroplast nucleoid
L	0046872	molecular_function	metal ion binding
M	0009507	cellular_component	chloroplast
M	0009657	biological_process	plastid organization
M	0015036	molecular_function	disulfide oxidoreductase activity
N	0016874	molecular_function	ligase activity
a	0000428	cellular_component	DNA-directed RNA polymerase complex
a	0003677	molecular_function	DNA binding
a	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
a	0005737	cellular_component	cytoplasm
a	0006351	biological_process	DNA-templated transcription
a	0009507	cellular_component	chloroplast
a	0016779	molecular_function	nucleotidyltransferase activity
a	0034062	molecular_function	5'-3' RNA polymerase activity
c	0000428	cellular_component	DNA-directed RNA polymerase complex
c	0003677	molecular_function	DNA binding
c	0003899	molecular_function	DNA-directed 5'-3' RNA polymerase activity
c	0006351	biological_process	DNA-templated transcription
c	0008270	molecular_function	zinc ion binding
c	0009507	cellular_component	chloroplast
c	0016779	molecular_function	nucleotidyltransferase activity
c	0034062	molecular_function	5'-3' RNA polymerase activity
c	0046872	molecular_function	metal ion binding
i	0009658	biological_process	chloroplast organization
i	0009662	biological_process	etioplast organization
i	0042644	cellular_component	chloroplast nucleoid
i	0042793	biological_process	plastid transcription
m	0009507	cellular_component	chloroplast
m	0009657	biological_process	plastid organization
m	0015036	molecular_function	disulfide oxidoreductase activity

Functional Information from PROSITE/UniProt

site_id	PS00088
Number of Residues	8
Details	SOD_MN Manganese and iron superoxide dismutases signature. DvWEHAYY

Chain	Residue	Details
L	ASP224-TYR231
G	ASP214-TYR221

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site_id	PS00563
Number of Residues	10
Details	STATHMIN_1 Stathmin family signature 1. PKKKDmSLEE

Chain	Residue	Details
H	PRO503-GLU512

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site_id	PS00583
Number of Residues	25
Details	PFKB_KINASES_1 pfkB family of carbohydrate kinases signature 1. GGpPsNVAisHvRLGgraafmgkvG

Chain	Residue	Details
I	GLY163-GLY187

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site_id	PS01166
Number of Residues	13
Details	RNA_POL_BETA RNA polymerases beta chain signature. GdKVAGrHGNKGI

Chain	Residue	Details
B	GLY817-ILE829

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01324

Chain	Residue	Details
c	CYS220
c	CYS291
c	CYS298
c	CYS301

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