8UK3
The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+ (class 6 reconstruction)
Functional Information from GO Data
Chain | GOid | namespace | contents |
1 | 0016020 | cellular_component | membrane |
1 | 0019028 | cellular_component | viral capsid |
1 | 0019062 | biological_process | virion attachment to host cell |
1 | 0020002 | cellular_component | host cell plasma membrane |
1 | 0030430 | cellular_component | host cell cytoplasm |
1 | 0039624 | cellular_component | viral outer capsid |
1 | 0039665 | biological_process | permeabilization of host organelle membrane involved in viral entry into host cell |
1 | 0044163 | cellular_component | host cytoskeleton |
1 | 0044165 | cellular_component | host cell endoplasmic reticulum |
1 | 0044168 | cellular_component | host cell rough endoplasmic reticulum |
1 | 0044172 | cellular_component | host cell endoplasmic reticulum-Golgi intermediate compartment |
1 | 0046718 | biological_process | symbiont entry into host cell |
1 | 0099008 | biological_process | symbiont entry into host cell via permeabilization of inner membrane |
2 | 0016020 | cellular_component | membrane |
2 | 0019028 | cellular_component | viral capsid |
2 | 0019062 | biological_process | virion attachment to host cell |
2 | 0020002 | cellular_component | host cell plasma membrane |
2 | 0030430 | cellular_component | host cell cytoplasm |
2 | 0039624 | cellular_component | viral outer capsid |
2 | 0039665 | biological_process | permeabilization of host organelle membrane involved in viral entry into host cell |
2 | 0044163 | cellular_component | host cytoskeleton |
2 | 0044165 | cellular_component | host cell endoplasmic reticulum |
2 | 0044168 | cellular_component | host cell rough endoplasmic reticulum |
2 | 0044172 | cellular_component | host cell endoplasmic reticulum-Golgi intermediate compartment |
2 | 0046718 | biological_process | symbiont entry into host cell |
2 | 0099008 | biological_process | symbiont entry into host cell via permeabilization of inner membrane |
3 | 0016020 | cellular_component | membrane |
3 | 0019028 | cellular_component | viral capsid |
3 | 0019062 | biological_process | virion attachment to host cell |
3 | 0020002 | cellular_component | host cell plasma membrane |
3 | 0030430 | cellular_component | host cell cytoplasm |
3 | 0039624 | cellular_component | viral outer capsid |
3 | 0039665 | biological_process | permeabilization of host organelle membrane involved in viral entry into host cell |
3 | 0044163 | cellular_component | host cytoskeleton |
3 | 0044165 | cellular_component | host cell endoplasmic reticulum |
3 | 0044168 | cellular_component | host cell rough endoplasmic reticulum |
3 | 0044172 | cellular_component | host cell endoplasmic reticulum-Golgi intermediate compartment |
3 | 0046718 | biological_process | symbiont entry into host cell |
3 | 0099008 | biological_process | symbiont entry into host cell via permeabilization of inner membrane |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 108 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_04131, ECO:0000269|PubMed:19520960 |
Chain | Residue | Details |
f | ASP95 | |
g | ASP228 | |
d | ASP228 | |
d | VAL229 | |
d | ASP301 | |
e | ASP95 | |
e | GLN177 | |
e | GLY206 | |
e | ASP228 | |
e | VAL229 | |
e | ASP301 | |
g | VAL229 | |
g | ASP301 | |
h | ASP95 | |
h | GLN177 | |
h | GLY206 | |
h | ASP228 | |
h | VAL229 | |
h | ASP301 | |
i | ASP95 | |
f | GLN177 | |
i | GLN177 | |
i | GLY206 | |
i | ASP228 | |
i | VAL229 | |
i | ASP301 | |
j | ASP95 | |
j | GLN177 | |
j | GLY206 | |
j | ASP228 | |
j | VAL229 | |
f | GLY206 | |
j | ASP301 | |
k | ASP95 | |
k | GLN177 | |
k | GLY206 | |
k | ASP228 | |
k | VAL229 | |
k | ASP301 | |
l | ASP95 | |
l | GLN177 | |
l | GLY206 | |
f | ASP228 | |
l | ASP228 | |
l | VAL229 | |
l | ASP301 | |
m | ASP95 | |
m | GLN177 | |
m | GLY206 | |
m | ASP228 | |
m | VAL229 | |
m | ASP301 | |
n | ASP95 | |
f | VAL229 | |
n | GLN177 | |
n | GLY206 | |
n | ASP228 | |
n | VAL229 | |
n | ASP301 | |
o | ASP95 | |
o | GLN177 | |
o | GLY206 | |
o | ASP228 | |
o | VAL229 | |
f | ASP301 | |
o | ASP301 | |
p | ASP95 | |
p | GLN177 | |
p | GLY206 | |
p | ASP228 | |
p | VAL229 | |
p | ASP301 | |
q | ASP95 | |
q | GLN177 | |
q | GLY206 | |
g | ASP95 | |
q | ASP228 | |
q | VAL229 | |
q | ASP301 | |
r | ASP95 | |
r | GLN177 | |
r | GLY206 | |
r | ASP228 | |
r | VAL229 | |
r | ASP301 | |
a | ASP95 | |
g | GLN177 | |
a | GLN177 | |
a | GLY206 | |
a | ASP228 | |
a | VAL229 | |
a | ASP301 | |
b | ASP95 | |
b | GLN177 | |
b | GLY206 | |
b | ASP228 | |
b | VAL229 | |
g | GLY206 | |
b | ASP301 | |
c | ASP95 | |
c | GLN177 | |
c | GLY206 | |
c | ASP228 | |
c | VAL229 | |
c | ASP301 | |
d | ASP95 | |
d | GLN177 | |
d | GLY206 |
site_id | SWS_FT_FI2 |
Number of Residues | 54 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_04131, ECO:0000269|PubMed:19487668, ECO:0000269|PubMed:19520960 |
Chain | Residue | Details |
f | THR214 | |
i | THR214 | |
i | GLU216 | |
i | ASP231 | |
j | THR214 | |
j | GLU216 | |
j | ASP231 | |
k | THR214 | |
k | GLU216 | |
k | ASP231 | |
l | THR214 | |
f | GLU216 | |
l | GLU216 | |
l | ASP231 | |
m | THR214 | |
m | GLU216 | |
m | ASP231 | |
n | THR214 | |
n | GLU216 | |
n | ASP231 | |
o | THR214 | |
o | GLU216 | |
f | ASP231 | |
o | ASP231 | |
p | THR214 | |
p | GLU216 | |
p | ASP231 | |
q | THR214 | |
q | GLU216 | |
q | ASP231 | |
r | THR214 | |
r | GLU216 | |
r | ASP231 | |
g | THR214 | |
a | THR214 | |
a | GLU216 | |
a | ASP231 | |
b | THR214 | |
b | GLU216 | |
b | ASP231 | |
c | THR214 | |
c | GLU216 | |
c | ASP231 | |
d | THR214 | |
g | GLU216 | |
d | GLU216 | |
d | ASP231 | |
e | THR214 | |
e | GLU216 | |
e | ASP231 | |
g | ASP231 | |
h | THR214 | |
h | GLU216 | |
h | ASP231 |
site_id | SWS_FT_FI3 |
Number of Residues | 18 |
Details | CARBOHYD: N-linked (GlcNAc...) asparagine; by host => ECO:0000269|PubMed:19487668, ECO:0000269|PubMed:21157433 |
Chain | Residue | Details |
f | ASN69 | |
o | ASN69 | |
p | ASN69 | |
q | ASN69 | |
r | ASN69 | |
a | ASN69 | |
b | ASN69 | |
c | ASN69 | |
d | ASN69 | |
e | ASN69 | |
g | ASN69 | |
h | ASN69 | |
i | ASN69 | |
j | ASN69 | |
k | ASN69 | |
l | ASN69 | |
m | ASN69 | |
n | ASN69 |