Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8IO2

The Rubisco assembly intermidate of Arabidopsis thaliana Rubisco accumulation factor 1 (AtRaf1) and Rubisco large subunit (RbcL)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0004497	molecular_function	monooxygenase activity
A	0005515	molecular_function	protein binding
A	0009853	biological_process	photorespiration
A	0015977	biological_process	carbon fixation
A	0015979	biological_process	photosynthesis
A	0016829	molecular_function	lyase activity
A	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
A	0019253	biological_process	reductive pentose-phosphate cycle
A	0031470	cellular_component	carboxysome
A	0046872	molecular_function	metal ion binding
B	0000287	molecular_function	magnesium ion binding
B	0004497	molecular_function	monooxygenase activity
B	0005515	molecular_function	protein binding
B	0009853	biological_process	photorespiration
B	0015977	biological_process	carbon fixation
B	0015979	biological_process	photosynthesis
B	0016829	molecular_function	lyase activity
B	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
B	0019253	biological_process	reductive pentose-phosphate cycle
B	0031470	cellular_component	carboxysome
B	0046872	molecular_function	metal ion binding
C	0000287	molecular_function	magnesium ion binding
C	0004497	molecular_function	monooxygenase activity
C	0005515	molecular_function	protein binding
C	0009853	biological_process	photorespiration
C	0015977	biological_process	carbon fixation
C	0015979	biological_process	photosynthesis
C	0016829	molecular_function	lyase activity
C	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
C	0019253	biological_process	reductive pentose-phosphate cycle
C	0031470	cellular_component	carboxysome
C	0046872	molecular_function	metal ion binding
D	0000287	molecular_function	magnesium ion binding
D	0004497	molecular_function	monooxygenase activity
D	0005515	molecular_function	protein binding
D	0009853	biological_process	photorespiration
D	0015977	biological_process	carbon fixation
D	0015979	biological_process	photosynthesis
D	0016829	molecular_function	lyase activity
D	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
D	0019253	biological_process	reductive pentose-phosphate cycle
D	0031470	cellular_component	carboxysome
D	0046872	molecular_function	metal ion binding
E	0000287	molecular_function	magnesium ion binding
E	0004497	molecular_function	monooxygenase activity
E	0005515	molecular_function	protein binding
E	0009853	biological_process	photorespiration
E	0015977	biological_process	carbon fixation
E	0015979	biological_process	photosynthesis
E	0016829	molecular_function	lyase activity
E	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
E	0019253	biological_process	reductive pentose-phosphate cycle
E	0031470	cellular_component	carboxysome
E	0046872	molecular_function	metal ion binding
F	0000287	molecular_function	magnesium ion binding
F	0004497	molecular_function	monooxygenase activity
F	0005515	molecular_function	protein binding
F	0009853	biological_process	photorespiration
F	0015977	biological_process	carbon fixation
F	0015979	biological_process	photosynthesis
F	0016829	molecular_function	lyase activity
F	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
F	0019253	biological_process	reductive pentose-phosphate cycle
F	0031470	cellular_component	carboxysome
F	0046872	molecular_function	metal ion binding
G	0000287	molecular_function	magnesium ion binding
G	0004497	molecular_function	monooxygenase activity
G	0005515	molecular_function	protein binding
G	0009853	biological_process	photorespiration
G	0015977	biological_process	carbon fixation
G	0015979	biological_process	photosynthesis
G	0016829	molecular_function	lyase activity
G	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
G	0019253	biological_process	reductive pentose-phosphate cycle
G	0031470	cellular_component	carboxysome
G	0046872	molecular_function	metal ion binding
H	0000287	molecular_function	magnesium ion binding
H	0004497	molecular_function	monooxygenase activity
H	0005515	molecular_function	protein binding
H	0009853	biological_process	photorespiration
H	0015977	biological_process	carbon fixation
H	0015979	biological_process	photosynthesis
H	0016829	molecular_function	lyase activity
H	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
H	0019253	biological_process	reductive pentose-phosphate cycle
H	0031470	cellular_component	carboxysome
H	0046872	molecular_function	metal ion binding

Functional Information from PROSITE/UniProt

site_id	PS00157
Number of Residues	9
Details	RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE

Chain	Residue	Details
A	GLY193-GLU201

site_id	PS00012
Number of Residues	16
Details	PHOSPHOPANTETHEINE Phosphopantetheine attachment site. LTGISSIEQNRLIVGA

Chain	Residue	Details
I	LEU61-ALA76

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	16
Details	ACT_SITE: Proton acceptor

Chain	Residue	Details
A	LYS172
A	HIS291
B	LYS172
B	HIS291
C	LYS172
C	HIS291
D	LYS172
D	HIS291
E	LYS172
E	HIS291
F	LYS172
F	HIS291
G	LYS172
G	HIS291
H	LYS172
H	HIS291

site_id	SWS_FT_FI2
Number of Residues	8
Details	BINDING: in homodimeric partner

Chain	Residue	Details
A	ASN120
B	ASN120
C	ASN120
D	ASN120
E	ASN120
F	ASN120
G	ASN120
H	ASN120

site_id	SWS_FT_FI3
Number of Residues	40
Details	BINDING:

Chain	Residue	Details
A	THR170
A	LYS174
A	ARG292
A	HIS324
A	SER376
B	THR170
B	LYS174
B	ARG292
B	HIS324
B	SER376
C	THR170
C	LYS174
C	ARG292
C	HIS324
C	SER376
D	THR170
D	LYS174
D	ARG292
D	HIS324
D	SER376
E	THR170
E	LYS174
E	ARG292
E	HIS324
E	SER376
F	THR170
F	LYS174
F	ARG292
F	HIS324
F	SER376
G	THR170
G	LYS174
G	ARG292
G	HIS324
G	SER376
H	THR170
H	LYS174
H	ARG292
H	HIS324
H	SER376

site_id	SWS_FT_FI4
Number of Residues	8
Details	BINDING: via carbamate group => ECO:0000269\|PubMed:8245022

Chain	Residue	Details
A	LYS198
B	LYS198
C	LYS198
D	LYS198
E	LYS198
F	LYS198
G	LYS198
H	LYS198

site_id	SWS_FT_FI5
Number of Residues	16
Details	BINDING: BINDING => ECO:0000269\|PubMed:8245022

Chain	Residue	Details
A	ASP200
A	GLU201
B	ASP200
B	GLU201
C	ASP200
C	GLU201
D	ASP200
D	GLU201
E	ASP200
E	GLU201
F	ASP200
F	GLU201
G	ASP200
G	GLU201
H	ASP200
H	GLU201

site_id	SWS_FT_FI6
Number of Residues	8
Details	SITE: Transition state stabilizer

Chain	Residue	Details
A	LYS331
B	LYS331
C	LYS331
D	LYS331
E	LYS331
F	LYS331
G	LYS331
H	LYS331

site_id	SWS_FT_FI7
Number of Residues	8
Details	MOD_RES: N6-carboxylysine => ECO:0000269\|PubMed:16593333

Chain	Residue	Details
A	LYS198
B	LYS198
C	LYS198
D	LYS198
E	LYS198
F	LYS198
G	LYS198
H	LYS198

Catalytic Information from CSA

site_id	MCSA1
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
A	LYS172	electrostatic stabiliser, metal ligand, proton donor
A	LYS198	metal ligand, nucleophile, proton donor
A	ASP200	metal ligand
A	GLU201	metal ligand
A	HIS291	proton acceptor
A	LYS331	electrostatic stabiliser

site_id	MCSA2
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
B	LYS172	electrostatic stabiliser, metal ligand, proton donor
B	LYS198	metal ligand, nucleophile, proton donor
B	ASP200	metal ligand
B	GLU201	metal ligand
B	HIS291	proton acceptor
B	LYS331	electrostatic stabiliser

site_id	MCSA3
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
C	LYS172	electrostatic stabiliser, metal ligand, proton donor
C	LYS198	metal ligand, nucleophile, proton donor
C	ASP200	metal ligand
C	GLU201	metal ligand
C	HIS291	proton acceptor
C	LYS331	electrostatic stabiliser

site_id	MCSA4
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
D	LYS172	electrostatic stabiliser, metal ligand, proton donor
D	LYS198	metal ligand, nucleophile, proton donor
D	ASP200	metal ligand
D	GLU201	metal ligand
D	HIS291	proton acceptor
D	LYS331	electrostatic stabiliser

site_id	MCSA5
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
E	LYS172	electrostatic stabiliser, metal ligand, proton donor
E	LYS198	metal ligand, nucleophile, proton donor
E	ASP200	metal ligand
E	GLU201	metal ligand
E	HIS291	proton acceptor
E	LYS331	electrostatic stabiliser

site_id	MCSA6
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
F	LYS172	electrostatic stabiliser, metal ligand, proton donor
F	LYS198	metal ligand, nucleophile, proton donor
F	ASP200	metal ligand
F	GLU201	metal ligand
F	HIS291	proton acceptor
F	LYS331	electrostatic stabiliser

site_id	MCSA7
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
G	LYS172	electrostatic stabiliser, metal ligand, proton donor
G	LYS198	metal ligand, nucleophile, proton donor
G	ASP200	metal ligand
G	GLU201	metal ligand
G	HIS291	proton acceptor
G	LYS331	electrostatic stabiliser

site_id	MCSA8
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
H	LYS172	electrostatic stabiliser, metal ligand, proton donor
H	LYS198	metal ligand, nucleophile, proton donor
H	ASP200	metal ligand
H	GLU201	metal ligand
H	HIS291	proton acceptor
H	LYS331	electrostatic stabiliser

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)