Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8ILB

The complexes of RbcL, AtRaf1 and AtBSD2 (LFB)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000287	molecular_function	magnesium ion binding
A	0004497	molecular_function	monooxygenase activity
A	0005515	molecular_function	protein binding
A	0009853	biological_process	photorespiration
A	0015977	biological_process	carbon fixation
A	0015979	biological_process	photosynthesis
A	0016829	molecular_function	lyase activity
A	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
A	0019253	biological_process	reductive pentose-phosphate cycle
A	0031470	cellular_component	carboxysome
A	0046872	molecular_function	metal ion binding
B	0000287	molecular_function	magnesium ion binding
B	0004497	molecular_function	monooxygenase activity
B	0005515	molecular_function	protein binding
B	0009853	biological_process	photorespiration
B	0015977	biological_process	carbon fixation
B	0015979	biological_process	photosynthesis
B	0016829	molecular_function	lyase activity
B	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
B	0019253	biological_process	reductive pentose-phosphate cycle
B	0031470	cellular_component	carboxysome
B	0046872	molecular_function	metal ion binding
C	0000287	molecular_function	magnesium ion binding
C	0004497	molecular_function	monooxygenase activity
C	0005515	molecular_function	protein binding
C	0009853	biological_process	photorespiration
C	0015977	biological_process	carbon fixation
C	0015979	biological_process	photosynthesis
C	0016829	molecular_function	lyase activity
C	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
C	0019253	biological_process	reductive pentose-phosphate cycle
C	0031470	cellular_component	carboxysome
C	0046872	molecular_function	metal ion binding
D	0000287	molecular_function	magnesium ion binding
D	0004497	molecular_function	monooxygenase activity
D	0005515	molecular_function	protein binding
D	0009853	biological_process	photorespiration
D	0015977	biological_process	carbon fixation
D	0015979	biological_process	photosynthesis
D	0016829	molecular_function	lyase activity
D	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
D	0019253	biological_process	reductive pentose-phosphate cycle
D	0031470	cellular_component	carboxysome
D	0046872	molecular_function	metal ion binding
J	0000287	molecular_function	magnesium ion binding
J	0004497	molecular_function	monooxygenase activity
J	0005515	molecular_function	protein binding
J	0009853	biological_process	photorespiration
J	0015977	biological_process	carbon fixation
J	0015979	biological_process	photosynthesis
J	0016829	molecular_function	lyase activity
J	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
J	0019253	biological_process	reductive pentose-phosphate cycle
J	0031470	cellular_component	carboxysome
J	0046872	molecular_function	metal ion binding
K	0000287	molecular_function	magnesium ion binding
K	0004497	molecular_function	monooxygenase activity
K	0005515	molecular_function	protein binding
K	0009853	biological_process	photorespiration
K	0015977	biological_process	carbon fixation
K	0015979	biological_process	photosynthesis
K	0016829	molecular_function	lyase activity
K	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
K	0019253	biological_process	reductive pentose-phosphate cycle
K	0031470	cellular_component	carboxysome
K	0046872	molecular_function	metal ion binding
L	0000287	molecular_function	magnesium ion binding
L	0004497	molecular_function	monooxygenase activity
L	0005515	molecular_function	protein binding
L	0009853	biological_process	photorespiration
L	0015977	biological_process	carbon fixation
L	0015979	biological_process	photosynthesis
L	0016829	molecular_function	lyase activity
L	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
L	0019253	biological_process	reductive pentose-phosphate cycle
L	0031470	cellular_component	carboxysome
L	0046872	molecular_function	metal ion binding
M	0000287	molecular_function	magnesium ion binding
M	0004497	molecular_function	monooxygenase activity
M	0005515	molecular_function	protein binding
M	0009853	biological_process	photorespiration
M	0015977	biological_process	carbon fixation
M	0015979	biological_process	photosynthesis
M	0016829	molecular_function	lyase activity
M	0016984	molecular_function	ribulose-bisphosphate carboxylase activity
M	0019253	biological_process	reductive pentose-phosphate cycle
M	0031470	cellular_component	carboxysome
M	0046872	molecular_function	metal ion binding

Functional Information from PROSITE/UniProt

site_id	PS00012
Number of Residues	16
Details	PHOSPHOPANTETHEINE Phosphopantetheine attachment site. LTGISSIEQNRLIVGA

Chain	Residue	Details
E	LEU121-ALA136

site_id	PS00157
Number of Residues	9
Details	RUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE

Chain	Residue	Details
A	GLY193-GLU201

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	568
Details	ZN_FING: CR-type => ECO:0000255\|PROSITE-ProRule:PRU00546

Chain	Residue	Details
F	PRO62-THR133
G	PRO62-THR133
H	PRO62-THR133
I	PRO62-THR133
O	PRO62-THR133
P	PRO62-THR133
Q	PRO62-THR133
R	PRO62-THR133
J	LYS172
J	HIS291
K	LYS172
K	HIS291
L	LYS172
L	HIS291
M	LYS172
M	HIS291

site_id	SWS_FT_FI2
Number of Residues	64
Details	BINDING: BINDING => ECO:0000269\|PubMed:29217567, ECO:0007744\|PDB:6EKB, ECO:0007744\|PDB:6EKC

Chain	Residue	Details
F	CYS72
F	CYS75
F	CYS83
F	CYS86
F	CYS107
F	CYS110
F	CYS118
F	CYS121
G	CYS72
G	CYS75
G	CYS83
G	CYS86
G	CYS107
G	CYS110
G	CYS118
G	CYS121
H	CYS72
H	CYS75
H	CYS83
H	CYS86
H	CYS107
H	CYS110
H	CYS118
H	CYS121
I	CYS72
I	CYS75
I	CYS83
I	CYS86
I	CYS107
I	CYS110
I	CYS118
I	CYS121
O	CYS72
O	CYS75
O	CYS83
O	CYS86
O	CYS107
O	CYS110
O	CYS118
O	CYS121
P	CYS72
P	CYS75
P	CYS83
P	CYS86
P	CYS107
P	CYS110
P	CYS118
P	CYS121
Q	CYS72
Q	CYS75
Q	CYS83
Q	CYS86
Q	CYS107
Q	CYS110
Q	CYS118
Q	CYS121
R	CYS72
R	CYS75
R	CYS83
R	CYS86
R	CYS107
R	CYS110
R	CYS118
R	CYS121

site_id	SWS_FT_FI3
Number of Residues	24
Details	BINDING: BINDING => ECO:0000269\|PubMed:29217567, ECO:0007744\|PDB:6EKB

Chain	Residue	Details
F	GLU78
F	CYS80
F	GLU115
G	GLU78
G	CYS80
G	GLU115
H	GLU78
H	CYS80
H	GLU115
I	GLU78
I	CYS80
I	GLU115
O	GLU78
O	CYS80
O	GLU115
P	GLU78
P	CYS80
P	GLU115
Q	GLU78
Q	CYS80
Q	GLU115
R	GLU78
R	CYS80
R	GLU115
J	SER376
K	THR170
K	LYS174
K	ARG292
K	HIS324
K	SER376
L	THR170
L	LYS174
L	ARG292
L	HIS324
L	SER376
M	THR170
M	LYS174
M	ARG292
M	HIS324
M	SER376

site_id	SWS_FT_FI4
Number of Residues	8
Details	BINDING: via carbamate group => ECO:0000269\|PubMed:8245022

Chain	Residue	Details
A	LYS198
B	LYS198
C	LYS198
D	LYS198
J	LYS198
K	LYS198
L	LYS198
M	LYS198

site_id	SWS_FT_FI5
Number of Residues	16
Details	BINDING: BINDING => ECO:0000269\|PubMed:8245022

Chain	Residue	Details
A	ASP200
A	GLU201
B	ASP200
B	GLU201
C	ASP200
C	GLU201
D	ASP200
D	GLU201
J	ASP200
J	GLU201
K	ASP200
K	GLU201
L	ASP200
L	GLU201
M	ASP200
M	GLU201

site_id	SWS_FT_FI6
Number of Residues	8
Details	SITE: Transition state stabilizer

Chain	Residue	Details
A	LYS331
B	LYS331
C	LYS331
D	LYS331
J	LYS331
K	LYS331
L	LYS331
M	LYS331

site_id	SWS_FT_FI7
Number of Residues	8
Details	MOD_RES: N6-carboxylysine => ECO:0000269\|PubMed:16593333

Chain	Residue	Details
A	LYS198
B	LYS198
C	LYS198
D	LYS198
J	LYS198
K	LYS198
L	LYS198
M	LYS198

Catalytic Information from CSA

site_id	MCSA1
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
A	LYS172	electrostatic stabiliser, metal ligand, proton donor
A	LYS198	metal ligand, nucleophile, proton donor
A	ASP200	metal ligand
A	GLU201	metal ligand
A	HIS291	proton acceptor
A	LYS331	electrostatic stabiliser

site_id	MCSA2
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
B	LYS172	electrostatic stabiliser, metal ligand, proton donor
B	LYS198	metal ligand, nucleophile, proton donor
B	ASP200	metal ligand
B	GLU201	metal ligand
B	HIS291	proton acceptor
B	LYS331	electrostatic stabiliser

site_id	MCSA3
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
C	LYS172	electrostatic stabiliser, metal ligand, proton donor
C	LYS198	metal ligand, nucleophile, proton donor
C	ASP200	metal ligand
C	GLU201	metal ligand
C	HIS291	proton acceptor
C	LYS331	electrostatic stabiliser

site_id	MCSA4
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
D	LYS172	electrostatic stabiliser, metal ligand, proton donor
D	LYS198	metal ligand, nucleophile, proton donor
D	ASP200	metal ligand
D	GLU201	metal ligand
D	HIS291	proton acceptor
D	LYS331	electrostatic stabiliser

site_id	MCSA5
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
J	LYS172	electrostatic stabiliser, metal ligand, proton donor
J	LYS198	metal ligand, nucleophile, proton donor
J	ASP200	metal ligand
J	GLU201	metal ligand
J	HIS291	proton acceptor
J	LYS331	electrostatic stabiliser

site_id	MCSA6
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
K	LYS172	electrostatic stabiliser, metal ligand, proton donor
K	LYS198	metal ligand, nucleophile, proton donor
K	ASP200	metal ligand
K	GLU201	metal ligand
K	HIS291	proton acceptor
K	LYS331	electrostatic stabiliser

site_id	MCSA7
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
L	LYS172	electrostatic stabiliser, metal ligand, proton donor
L	LYS198	metal ligand, nucleophile, proton donor
L	ASP200	metal ligand
L	GLU201	metal ligand
L	HIS291	proton acceptor
L	LYS331	electrostatic stabiliser

site_id	MCSA8
Number of Residues	6
Details	M-CSA 907

Chain	Residue	Details
M	LYS172	electrostatic stabiliser, metal ligand, proton donor
M	LYS198	metal ligand, nucleophile, proton donor
M	ASP200	metal ligand
M	GLU201	metal ligand
M	HIS291	proton acceptor
M	LYS331	electrostatic stabiliser

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)