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7XSD

Cryo-EM structure of RuBisCO assembly intermediate RbcL8Raf18RbcX16

Functional Information from GO Data
ChainGOidnamespacecontents
10005737cellular_componentcytoplasm
10006457biological_processprotein folding
10015977biological_processcarbon fixation
10015979biological_processphotosynthesis
10031470cellular_componentcarboxysome
10044183molecular_functionprotein folding chaperone
10110102biological_processribulose bisphosphate carboxylase complex assembly
20005737cellular_componentcytoplasm
20006457biological_processprotein folding
20015977biological_processcarbon fixation
20015979biological_processphotosynthesis
20031470cellular_componentcarboxysome
20044183molecular_functionprotein folding chaperone
20110102biological_processribulose bisphosphate carboxylase complex assembly
30005737cellular_componentcytoplasm
30006457biological_processprotein folding
30015977biological_processcarbon fixation
30015979biological_processphotosynthesis
30031470cellular_componentcarboxysome
30044183molecular_functionprotein folding chaperone
30110102biological_processribulose bisphosphate carboxylase complex assembly
40005737cellular_componentcytoplasm
40006457biological_processprotein folding
40015977biological_processcarbon fixation
40015979biological_processphotosynthesis
40031470cellular_componentcarboxysome
40044183molecular_functionprotein folding chaperone
40110102biological_processribulose bisphosphate carboxylase complex assembly
50005737cellular_componentcytoplasm
50006457biological_processprotein folding
50015977biological_processcarbon fixation
50015979biological_processphotosynthesis
50031470cellular_componentcarboxysome
50044183molecular_functionprotein folding chaperone
50110102biological_processribulose bisphosphate carboxylase complex assembly
60005737cellular_componentcytoplasm
60006457biological_processprotein folding
60015977biological_processcarbon fixation
60015979biological_processphotosynthesis
60031470cellular_componentcarboxysome
60044183molecular_functionprotein folding chaperone
60110102biological_processribulose bisphosphate carboxylase complex assembly
70005737cellular_componentcytoplasm
70006457biological_processprotein folding
70015977biological_processcarbon fixation
70015979biological_processphotosynthesis
70031470cellular_componentcarboxysome
70044183molecular_functionprotein folding chaperone
70110102biological_processribulose bisphosphate carboxylase complex assembly
80005737cellular_componentcytoplasm
80006457biological_processprotein folding
80015977biological_processcarbon fixation
80015979biological_processphotosynthesis
80031470cellular_componentcarboxysome
80044183molecular_functionprotein folding chaperone
80110102biological_processribulose bisphosphate carboxylase complex assembly
A0000287molecular_functionmagnesium ion binding
A0004497molecular_functionmonooxygenase activity
A0009853biological_processphotorespiration
A0015977biological_processcarbon fixation
A0015979biological_processphotosynthesis
A0016829molecular_functionlyase activity
A0016984molecular_functionribulose-bisphosphate carboxylase activity
A0019253biological_processreductive pentose-phosphate cycle
A0031470cellular_componentcarboxysome
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0004497molecular_functionmonooxygenase activity
B0009853biological_processphotorespiration
B0015977biological_processcarbon fixation
B0015979biological_processphotosynthesis
B0016829molecular_functionlyase activity
B0016984molecular_functionribulose-bisphosphate carboxylase activity
B0019253biological_processreductive pentose-phosphate cycle
B0031470cellular_componentcarboxysome
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0004497molecular_functionmonooxygenase activity
C0009853biological_processphotorespiration
C0015977biological_processcarbon fixation
C0015979biological_processphotosynthesis
C0016829molecular_functionlyase activity
C0016984molecular_functionribulose-bisphosphate carboxylase activity
C0019253biological_processreductive pentose-phosphate cycle
C0031470cellular_componentcarboxysome
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0004497molecular_functionmonooxygenase activity
D0009853biological_processphotorespiration
D0015977biological_processcarbon fixation
D0015979biological_processphotosynthesis
D0016829molecular_functionlyase activity
D0016984molecular_functionribulose-bisphosphate carboxylase activity
D0019253biological_processreductive pentose-phosphate cycle
D0031470cellular_componentcarboxysome
D0046872molecular_functionmetal ion binding
E0000287molecular_functionmagnesium ion binding
E0004497molecular_functionmonooxygenase activity
E0009853biological_processphotorespiration
E0015977biological_processcarbon fixation
E0015979biological_processphotosynthesis
E0016829molecular_functionlyase activity
E0016984molecular_functionribulose-bisphosphate carboxylase activity
E0019253biological_processreductive pentose-phosphate cycle
E0031470cellular_componentcarboxysome
E0046872molecular_functionmetal ion binding
F0000287molecular_functionmagnesium ion binding
F0004497molecular_functionmonooxygenase activity
F0009853biological_processphotorespiration
F0015977biological_processcarbon fixation
F0015979biological_processphotosynthesis
F0016829molecular_functionlyase activity
F0016984molecular_functionribulose-bisphosphate carboxylase activity
F0019253biological_processreductive pentose-phosphate cycle
F0031470cellular_componentcarboxysome
F0046872molecular_functionmetal ion binding
G0000287molecular_functionmagnesium ion binding
G0004497molecular_functionmonooxygenase activity
G0009853biological_processphotorespiration
G0015977biological_processcarbon fixation
G0015979biological_processphotosynthesis
G0016829molecular_functionlyase activity
G0016984molecular_functionribulose-bisphosphate carboxylase activity
G0019253biological_processreductive pentose-phosphate cycle
G0031470cellular_componentcarboxysome
G0046872molecular_functionmetal ion binding
H0000287molecular_functionmagnesium ion binding
H0004497molecular_functionmonooxygenase activity
H0009853biological_processphotorespiration
H0015977biological_processcarbon fixation
H0015979biological_processphotosynthesis
H0016829molecular_functionlyase activity
H0016984molecular_functionribulose-bisphosphate carboxylase activity
H0019253biological_processreductive pentose-phosphate cycle
H0031470cellular_componentcarboxysome
H0046872molecular_functionmetal ion binding
I0005737cellular_componentcytoplasm
I0015977biological_processcarbon fixation
I0015979biological_processphotosynthesis
I0110102biological_processribulose bisphosphate carboxylase complex assembly
J0005737cellular_componentcytoplasm
J0015977biological_processcarbon fixation
J0015979biological_processphotosynthesis
J0110102biological_processribulose bisphosphate carboxylase complex assembly
K0005737cellular_componentcytoplasm
K0015977biological_processcarbon fixation
K0015979biological_processphotosynthesis
K0110102biological_processribulose bisphosphate carboxylase complex assembly
L0005737cellular_componentcytoplasm
L0015977biological_processcarbon fixation
L0015979biological_processphotosynthesis
L0110102biological_processribulose bisphosphate carboxylase complex assembly
M0005737cellular_componentcytoplasm
M0015977biological_processcarbon fixation
M0015979biological_processphotosynthesis
M0110102biological_processribulose bisphosphate carboxylase complex assembly
N0005737cellular_componentcytoplasm
N0015977biological_processcarbon fixation
N0015979biological_processphotosynthesis
N0110102biological_processribulose bisphosphate carboxylase complex assembly
O0005737cellular_componentcytoplasm
O0015977biological_processcarbon fixation
O0015979biological_processphotosynthesis
O0110102biological_processribulose bisphosphate carboxylase complex assembly
P0005737cellular_componentcytoplasm
P0015977biological_processcarbon fixation
P0015979biological_processphotosynthesis
P0110102biological_processribulose bisphosphate carboxylase complex assembly
Q0005737cellular_componentcytoplasm
Q0006457biological_processprotein folding
Q0015977biological_processcarbon fixation
Q0015979biological_processphotosynthesis
Q0031470cellular_componentcarboxysome
Q0044183molecular_functionprotein folding chaperone
Q0110102biological_processribulose bisphosphate carboxylase complex assembly
R0005737cellular_componentcytoplasm
R0006457biological_processprotein folding
R0015977biological_processcarbon fixation
R0015979biological_processphotosynthesis
R0031470cellular_componentcarboxysome
R0044183molecular_functionprotein folding chaperone
R0110102biological_processribulose bisphosphate carboxylase complex assembly
S0005737cellular_componentcytoplasm
S0006457biological_processprotein folding
S0015977biological_processcarbon fixation
S0015979biological_processphotosynthesis
S0031470cellular_componentcarboxysome
S0044183molecular_functionprotein folding chaperone
S0110102biological_processribulose bisphosphate carboxylase complex assembly
T0005737cellular_componentcytoplasm
T0006457biological_processprotein folding
T0015977biological_processcarbon fixation
T0015979biological_processphotosynthesis
T0031470cellular_componentcarboxysome
T0044183molecular_functionprotein folding chaperone
T0110102biological_processribulose bisphosphate carboxylase complex assembly
U0005737cellular_componentcytoplasm
U0006457biological_processprotein folding
U0015977biological_processcarbon fixation
U0015979biological_processphotosynthesis
U0031470cellular_componentcarboxysome
U0044183molecular_functionprotein folding chaperone
U0110102biological_processribulose bisphosphate carboxylase complex assembly
V0005737cellular_componentcytoplasm
V0006457biological_processprotein folding
V0015977biological_processcarbon fixation
V0015979biological_processphotosynthesis
V0031470cellular_componentcarboxysome
V0044183molecular_functionprotein folding chaperone
V0110102biological_processribulose bisphosphate carboxylase complex assembly
W0005737cellular_componentcytoplasm
W0006457biological_processprotein folding
W0015977biological_processcarbon fixation
W0015979biological_processphotosynthesis
W0031470cellular_componentcarboxysome
W0044183molecular_functionprotein folding chaperone
W0110102biological_processribulose bisphosphate carboxylase complex assembly
X0005737cellular_componentcytoplasm
X0006457biological_processprotein folding
X0015977biological_processcarbon fixation
X0015979biological_processphotosynthesis
X0031470cellular_componentcarboxysome
X0044183molecular_functionprotein folding chaperone
X0110102biological_processribulose bisphosphate carboxylase complex assembly
Functional Information from PROSITE/UniProt
site_idPS00157
Number of Residues9
DetailsRUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE
ChainResidueDetails
CGLY197-GLU205

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
GLYS176
AHIS295
BLYS176
BHIS295
CLYS176
CHIS295
DLYS176
DHIS295
GHIS295
HLYS176
HHIS295
ELYS176
EHIS295
FLYS176
FHIS295
ALYS176

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: in homodimeric partner => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
GASN124
HASN124
EASN124
FASN124
AASN124
BASN124
CASN124
DASN124

site_idSWS_FT_FI3
Number of Residues56
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
EASP204
EGLU205
EARG296
EHIS328
ESER380
FTHR174
FLYS178
FASP204
FGLU205
FARG296
FHIS328
FSER380
ATHR174
ALYS178
AASP204
AGLU205
AARG296
AHIS328
ASER380
BTHR174
BLYS178
BASP204
BGLU205
BARG296
BHIS328
BSER380
CTHR174
CLYS178
CASP204
CGLU205
CARG296
CHIS328
CSER380
DTHR174
DLYS178
DASP204
DGLU205
DARG296
DHIS328
DSER380
GTHR174
GLYS178
GASP204
GGLU205
GARG296
GHIS328
GSER380
HTHR174
HLYS178
HASP204
HGLU205
HARG296
HHIS328
HSER380
ETHR174
ELYS178

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: via carbamate group => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
GLYS202
HLYS202
ELYS202
FLYS202
ALYS202
BLYS202
CLYS202
DLYS202

site_idSWS_FT_FI5
Number of Residues8
DetailsSITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
GLYS335
HLYS335
ELYS335
FLYS335
ALYS335
BLYS335
CLYS335
DLYS335

site_idSWS_FT_FI6
Number of Residues8
DetailsMOD_RES: N6-carboxylysine => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
GLYS202
HLYS202
ELYS202
FLYS202
ALYS202
BLYS202
CLYS202
DLYS202

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PDB entries from 2024-05-15

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