Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7PKS

Structural basis of Integrator-mediated transcription regulation

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
A0000428cellular_componentDNA-directed RNA polymerase complex
A0001055molecular_functionRNA polymerase II activity
A0003677molecular_functionDNA binding
A0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
A0005634cellular_componentnucleus
A0005665cellular_componentRNA polymerase II, core complex
A0006351biological_processDNA-templated transcription
A0006366biological_processtranscription by RNA polymerase II
A0016779molecular_functionnucleotidyltransferase activity
A0031981cellular_componentnuclear lumen
A0032991cellular_componentprotein-containing complex
A0046872molecular_functionmetal ion binding
B0000428cellular_componentDNA-directed RNA polymerase complex
B0001055molecular_functionRNA polymerase II activity
B0003677molecular_functionDNA binding
B0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
B0005665cellular_componentRNA polymerase II, core complex
B0006351biological_processDNA-templated transcription
B0006366biological_processtranscription by RNA polymerase II
B0016779molecular_functionnucleotidyltransferase activity
B0032549molecular_functionribonucleoside binding
B0034062molecular_function5'-3' RNA polymerase activity
B0046872molecular_functionmetal ion binding
C0003677molecular_functionDNA binding
C0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
C0006351biological_processDNA-templated transcription
C0046983molecular_functionprotein dimerization activity
D0000166molecular_functionnucleotide binding
D0006352biological_processDNA-templated transcription initiation
D0030880cellular_componentRNA polymerase complex
D0044237biological_processcellular metabolic process
E0001054molecular_functionRNA polymerase I activity
E0001055molecular_functionRNA polymerase II activity
E0001056molecular_functionRNA polymerase III activity
E0003677molecular_functionDNA binding
E0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
E0005634cellular_componentnucleus
E0005665cellular_componentRNA polymerase II, core complex
E0005666cellular_componentRNA polymerase III complex
E0005736cellular_componentRNA polymerase I complex
E0006351biological_processDNA-templated transcription
E0006362biological_processtranscription elongation by RNA polymerase I
E0006366biological_processtranscription by RNA polymerase II
E0016591cellular_componentRNA polymerase II, holoenzyme
E0042797biological_processtRNA transcription by RNA polymerase III
F0000428cellular_componentDNA-directed RNA polymerase complex
F0001650cellular_componentfibrillar center
F0003677molecular_functionDNA binding
F0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
F0005634cellular_componentnucleus
F0005654cellular_componentnucleoplasm
F0005665cellular_componentRNA polymerase II, core complex
F0005666cellular_componentRNA polymerase III complex
F0005736cellular_componentRNA polymerase I complex
F0006351biological_processDNA-templated transcription
F0006366biological_processtranscription by RNA polymerase II
G0003676molecular_functionnucleic acid binding
G0006351biological_processDNA-templated transcription
G0006352biological_processDNA-templated transcription initiation
H0000428cellular_componentDNA-directed RNA polymerase complex
H0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
H0005634cellular_componentnucleus
H0005665cellular_componentRNA polymerase II, core complex
H0006351biological_processDNA-templated transcription
I0000428cellular_componentDNA-directed RNA polymerase complex
I0001193biological_processmaintenance of transcriptional fidelity during transcription elongation by RNA polymerase II
I0003676molecular_functionnucleic acid binding
I0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
I0005634cellular_componentnucleus
I0005654cellular_componentnucleoplasm
I0005665cellular_componentRNA polymerase II, core complex
I0005730cellular_componentnucleolus
I0006283biological_processtranscription-coupled nucleotide-excision repair
I0006351biological_processDNA-templated transcription
I0006366biological_processtranscription by RNA polymerase II
I0006367biological_processtranscription initiation at RNA polymerase II promoter
I0008270molecular_functionzinc ion binding
I0016591cellular_componentRNA polymerase II, holoenzyme
I0046872molecular_functionmetal ion binding
J0000428cellular_componentDNA-directed RNA polymerase complex
J0001054molecular_functionRNA polymerase I activity
J0001055molecular_functionRNA polymerase II activity
J0001056molecular_functionRNA polymerase III activity
J0003677molecular_functionDNA binding
J0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
J0005665cellular_componentRNA polymerase II, core complex
J0005666cellular_componentRNA polymerase III complex
J0005736cellular_componentRNA polymerase I complex
J0006351biological_processDNA-templated transcription
J0006360biological_processtranscription by RNA polymerase I
J0006366biological_processtranscription by RNA polymerase II
J0008270molecular_functionzinc ion binding
J0042797biological_processtRNA transcription by RNA polymerase III
J0046872molecular_functionmetal ion binding
K0000428cellular_componentDNA-directed RNA polymerase complex
K0001055molecular_functionRNA polymerase II activity
K0003677molecular_functionDNA binding
K0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
K0005634cellular_componentnucleus
K0005665cellular_componentRNA polymerase II, core complex
K0006351biological_processDNA-templated transcription
K0006366biological_processtranscription by RNA polymerase II
K0016591cellular_componentRNA polymerase II, holoenzyme
K0046983molecular_functionprotein dimerization activity
L0003677molecular_functionDNA binding
L0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
L0005634cellular_componentnucleus
L0005665cellular_componentRNA polymerase II, core complex
L0005666cellular_componentRNA polymerase III complex
L0005736cellular_componentRNA polymerase I complex
L0006351biological_processDNA-templated transcription
L0006366biological_processtranscription by RNA polymerase II
L0008270molecular_functionzinc ion binding
L0046872molecular_functionmetal ion binding
M0003677molecular_functionDNA binding
M0006366biological_processtranscription by RNA polymerase II
U0003682molecular_functionchromatin binding
U0005515molecular_functionprotein binding
U0005634cellular_componentnucleus
U0005654cellular_componentnucleoplasm
U0005829cellular_componentcytosol
U0016604cellular_componentnuclear body
U0031401biological_processpositive regulation of protein modification process
U0032021cellular_componentNELF complex
U0034244biological_processnegative regulation of transcription elongation by RNA polymerase II
U0045944biological_processpositive regulation of transcription by RNA polymerase II
U0060090molecular_functionmolecular adaptor activity
V0003723molecular_functionRNA binding
V0005515molecular_functionprotein binding
V0005634cellular_componentnucleus
V0005654cellular_componentnucleoplasm
V0005737cellular_componentcytoplasm
V0008283biological_processcell population proliferation
V0032021cellular_componentNELF complex
V0034244biological_processnegative regulation of transcription elongation by RNA polymerase II
V0045892biological_processnegative regulation of DNA-templated transcription
V0048863biological_processstem cell differentiation
V2000737biological_processnegative regulation of stem cell differentiation
W0003723molecular_functionRNA binding
W0005515molecular_functionprotein binding
W0005634cellular_componentnucleus
W0005654cellular_componentnucleoplasm
W0016020cellular_componentmembrane
W0032021cellular_componentNELF complex
W0034244biological_processnegative regulation of transcription elongation by RNA polymerase II
W0045892biological_processnegative regulation of DNA-templated transcription
Z0000122biological_processnegative regulation of transcription by RNA polymerase II
Z0003682molecular_functionchromatin binding
Z0003723molecular_functionRNA binding
Z0003729molecular_functionmRNA binding
Z0005515molecular_functionprotein binding
Z0005634cellular_componentnucleus
Z0005654cellular_componentnucleoplasm
Z0006354biological_processDNA-templated transcription elongation
Z0006357biological_processregulation of transcription by RNA polymerase II
Z0006368biological_processtranscription elongation by RNA polymerase II
Z0016239biological_processpositive regulation of macroautophagy
Z0019899molecular_functionenzyme binding
Z0032044cellular_componentDSIF complex
Z0032784biological_processregulation of DNA-templated transcription elongation
Z0032785biological_processnegative regulation of DNA-templated transcription, elongation
Z0032786biological_processpositive regulation of DNA-templated transcription, elongation
Z0034243biological_processregulation of transcription elongation by RNA polymerase II
Z0045944biological_processpositive regulation of transcription by RNA polymerase II
Z0046982molecular_functionprotein heterodimerization activity
Z0140673biological_processtranscription elongation-coupled chromatin remodeling
a0001832biological_processblastocyst growth
a0001833biological_processinner cell mass cell proliferation
a0005634cellular_componentnucleus
a0005654cellular_componentnucleoplasm
a0007566biological_processembryo implantation
a0016020cellular_componentmembrane
a0016180biological_processsnRNA processing
a0031965cellular_componentnuclear membrane
a0032039cellular_componentintegrator complex
a0034243biological_processregulation of transcription elongation by RNA polymerase II
a0034474biological_processU2 snRNA 3'-end processing
a0043066biological_processnegative regulation of apoptotic process
b0005515molecular_functionprotein binding
b0005634cellular_componentnucleus
b0005654cellular_componentnucleoplasm
b0005737cellular_componentcytoplasm
b0016020cellular_componentmembrane
b0016180biological_processsnRNA processing
b0031965cellular_componentnuclear membrane
b0032039cellular_componentintegrator complex
b0034243biological_processregulation of transcription elongation by RNA polymerase II
b0034472biological_processsnRNA 3'-end processing
d0005515molecular_functionprotein binding
d0005634cellular_componentnucleus
d0005654cellular_componentnucleoplasm
d0005730cellular_componentnucleolus
d0016180biological_processsnRNA processing
d0032039cellular_componentintegrator complex
d0034243biological_processregulation of transcription elongation by RNA polymerase II
e0005515molecular_functionprotein binding
e0005634cellular_componentnucleus
e0005654cellular_componentnucleoplasm
e0005737cellular_componentcytoplasm
e0005829cellular_componentcytosol
e0016020cellular_componentmembrane
e0016180biological_processsnRNA processing
e0031965cellular_componentnuclear membrane
e0032039cellular_componentintegrator complex
e0034243biological_processregulation of transcription elongation by RNA polymerase II
e0034472biological_processsnRNA 3'-end processing
f0004888molecular_functiontransmembrane signaling receptor activity
f0005515molecular_functionprotein binding
f0005634cellular_componentnucleus
f0005654cellular_componentnucleoplasm
f0015629cellular_componentactin cytoskeleton
f0016180biological_processsnRNA processing
f0032039cellular_componentintegrator complex
f0034243biological_processregulation of transcription elongation by RNA polymerase II
f0034472biological_processsnRNA 3'-end processing
g0000077biological_processDNA damage checkpoint signaling
g0005515molecular_functionprotein binding
g0005634cellular_componentnucleus
g0005654cellular_componentnucleoplasm
g0005694cellular_componentchromosome
g0005737cellular_componentcytoplasm
g0006974biological_processDNA damage response
g0016180biological_processsnRNA processing
g0016604cellular_componentnuclear body
g0032039cellular_componentintegrator complex
g0034243biological_processregulation of transcription elongation by RNA polymerase II
g0034472biological_processsnRNA 3'-end processing
g0071479biological_processcellular response to ionizing radiation
h0005515molecular_functionprotein binding
h0005634cellular_componentnucleus
h0005654cellular_componentnucleoplasm
h0016180biological_processsnRNA processing
h0032039cellular_componentintegrator complex
h0034243biological_processregulation of transcription elongation by RNA polymerase II
h0034472biological_processsnRNA 3'-end processing
i0005515molecular_functionprotein binding
i0005634cellular_componentnucleus
i0005654cellular_componentnucleoplasm
i0005829cellular_componentcytosol
i0016180biological_processsnRNA processing
i0030512biological_processnegative regulation of transforming growth factor beta receptor signaling pathway
i0032039cellular_componentintegrator complex
i0034243biological_processregulation of transcription elongation by RNA polymerase II
i0034472biological_processsnRNA 3'-end processing
k0004521molecular_functionRNA endonuclease activity
k0005515molecular_functionprotein binding
k0005634cellular_componentnucleus
k0005654cellular_componentnucleoplasm
k0005737cellular_componentcytoplasm
k0005829cellular_componentcytosol
k0016180biological_processsnRNA processing
k0016787molecular_functionhydrolase activity
k0032039cellular_componentintegrator complex
k0034243biological_processregulation of transcription elongation by RNA polymerase II
k0072562cellular_componentblood microparticle
p0000159cellular_componentprotein phosphatase type 2A complex
p0000775cellular_componentchromosome, centromeric region
p0004722molecular_functionprotein serine/threonine phosphatase activity
p0005515molecular_functionprotein binding
p0005634cellular_componentnucleus
p0005694cellular_componentchromosome
p0005737cellular_componentcytoplasm
p0005739cellular_componentmitochondrion
p0005829cellular_componentcytosol
p0005886cellular_componentplasma membrane
p0007059biological_processchromosome segregation
p0007143biological_processfemale meiotic nuclear division
p0015630cellular_componentmicrotubule cytoskeleton
p0016020cellular_componentmembrane
p0016328cellular_componentlateral plasma membrane
p0019888molecular_functionprotein phosphatase regulator activity
p0030425cellular_componentdendrite
p0035331biological_processnegative regulation of hippo signaling
p0035556biological_processintracellular signal transduction
p0040008biological_processregulation of growth
p0042995cellular_componentcell projection
p0043005cellular_componentneuron projection
p0043025cellular_componentneuronal cell body
p0043029biological_processT cell homeostasis
p0045202cellular_componentsynapse
p0045595biological_processregulation of cell differentiation
p0046982molecular_functionprotein heterodimerization activity
p0051232biological_processmeiotic spindle elongation
p0051306biological_processmitotic sister chromatid separation
p0051754biological_processmeiotic sister chromatid cohesion, centromeric
p0051898biological_processnegative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
p0065003biological_processprotein-containing complex assembly
p0070062cellular_componentextracellular exosome
p0090443cellular_componentFAR/SIN/STRIPAK complex
p0098978cellular_componentglutamatergic synapse
p1903538biological_processregulation of meiotic cell cycle process involved in oocyte maturation
p1990405molecular_functionprotein antigen binding
p2001241biological_processpositive regulation of extrinsic apoptotic signaling pathway in absence of ligand
q0000159cellular_componentprotein phosphatase type 2A complex
q0000278biological_processmitotic cell cycle
q0000775cellular_componentchromosome, centromeric region
q0000922cellular_componentspindle pole
q0001932biological_processregulation of protein phosphorylation
q0004721molecular_functionphosphoprotein phosphatase activity
q0004722molecular_functionprotein serine/threonine phosphatase activity
q0004725molecular_functionprotein tyrosine phosphatase activity
q0005515molecular_functionprotein binding
q0005634cellular_componentnucleus
q0005694cellular_componentchromosome
q0005737cellular_componentcytoplasm
q0005739cellular_componentmitochondrion
q0005829cellular_componentcytosol
q0005856cellular_componentcytoskeleton
q0005886cellular_componentplasma membrane
q0006470biological_processprotein dephosphorylation
q0007498biological_processmesoderm development
q0008287cellular_componentprotein serine/threonine phosphatase complex
q0010288biological_processresponse to lead ion
q0010719biological_processnegative regulation of epithelial to mesenchymal transition
q0015630cellular_componentmicrotubule cytoskeleton
q0016020cellular_componentmembrane
q0016787molecular_functionhydrolase activity
q0017018molecular_functionmyosin phosphatase activity
q0035331biological_processnegative regulation of hippo signaling
q0035556biological_processintracellular signal transduction
q0035970biological_processpeptidyl-threonine dephosphorylation
q0040008biological_processregulation of growth
q0043029biological_processT cell homeostasis
q0045121cellular_componentmembrane raft
q0045202cellular_componentsynapse
q0045595biological_processregulation of cell differentiation
q0046872molecular_functionmetal ion binding
q0046982molecular_functionprotein heterodimerization activity
q0048156molecular_functiontau protein binding
q0050811molecular_functionGABA receptor binding
q0051321biological_processmeiotic cell cycle
q0051898biological_processnegative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
q0070062cellular_componentextracellular exosome
q0070262biological_processpeptidyl-serine dephosphorylation
q0071902biological_processpositive regulation of protein serine/threonine kinase activity
q0090443cellular_componentFAR/SIN/STRIPAK complex
q1900227biological_processpositive regulation of NLRP3 inflammasome complex assembly
q1904526biological_processregulation of microtubule binding
q1904528biological_processpositive regulation of microtubule binding
q1904539biological_processnegative regulation of glycolytic process through fructose-6-phosphate
q2000045biological_processregulation of G1/S transition of mitotic cell cycle
Functional Information from PROSITE/UniProt
site_idPS00018
Number of Residues13
DetailsEF_HAND_1 EF-hand calcium-binding domain. DNDPSDYVEqdDI
ChainResidueDetails
CASP136-ILE148

site_idPS00019
Number of Residues10
DetailsACTININ_1 Actinin-type actin-binding domain signature 1. QPeTYYKWDN
ChainResidueDetails
aGLN620-ASN629

site_idPS00039
Number of Residues9
DetailsDEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. MIDEADEfV
ChainResidueDetails
fMET627-VAL635

site_idPS00125
Number of Residues6
DetailsSER_THR_PHOSPHATASE Serine/threonine specific protein phosphatases signature. LRGNHE
ChainResidueDetails
qLEU114-GLU119

site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YVCTAPH
ChainResidueDetails
ITYR112-HIS118

site_idPS00446
Number of Residues41
DetailsRNA_POL_D_30KD RNA polymerases D / 30 to 40 Kd subunits signature. NSIRRvfiaevpiiAidwVqidaNsSvlhDEfIAhRLGLIP
ChainResidueDetails
CASN32-PRO72

site_idPS00466
Number of Residues38
DetailsZF_TFIIS_1 Zinc finger TFIIS-type signature. CqkCghkeavffqSHSARaEDAmrlyyvCtaph.CghrW
ChainResidueDetails
ICYS86-TRP123

site_idPS01030
Number of Residues27
DetailsRNA_POL_M_15KD RNA polymerases M / 15 Kd subunits signature. FCqECNNMLypkedkenrillyaCrnC
ChainResidueDetails
IPHE16-CYS42

site_idPS01110
Number of Residues14
DetailsRNA_POL_H_23KD RNA polymerases H / 23 Kd subunits signature. HELVPEHvvMtkEE
ChainResidueDetails
EHIS142-GLU155

site_idPS01111
Number of Residues15
DetailsRNA_POL_K_14KD RNA polymerases K / 14 to 18 Kd subunits signature. TkYErARvLGtRAlQ
ChainResidueDetails
FTHR58-GLN72

site_idPS01112
Number of Residues10
DetailsRNA_POL_N_8KD RNA polymerases N / 8 Kd subunits signature. IIPVrCFTCG
ChainResidueDetails
JILE2-GLY11

site_idPS01154
Number of Residues32
DetailsRNA_POL_L_13KD RNA polymerases L / 13 to 16 Kd subunits signature. InkEdHTLgNiIksqLlkdpqVlfagYkvpHP
ChainResidueDetails
KILE35-PRO66

site_idPS01166
Number of Residues13
DetailsRNA_POL_BETA RNA polymerases beta chain signature. GdKFASrHGQKGT
ChainResidueDetails
BGLY932-THR944

site_idPS00115
Number of Residues7
DetailsRNA_POL_II_REPEAT Eukaryotic RNA polymerase II heptapeptide repeat. YSPTSPA
ChainResidueDetails
ATYR1755-SER1761
ATYR1818-SER1824
ATYR1825-SER1831
ATYR1832-LYS1838
ATYR1839-SER1845
ATYR1853-LYS1859
ATYR1930-LYS1936
ATYR1671-SER1677
ATYR1720-SER1726
ATYR1593-ALA1599
ATYR1678-SER1684
ATYR1685-SER1691
ATYR1692-SER1698
ATYR1699-SER1705
ATYR1706-SER1712
ATYR1713-SER1719
ATYR1615-SER1621
ATYR1762-SER1768
ATYR1769-ASN1775
ATYR1776-ASN1782
ATYR1783-SER1789
ATYR1790-SER1796
ATYR1797-SER1803
ATYR1622-SER1628
ATYR1888-THR1894
ATYR1902-LYS1908
ATYR1629-ASN1635
ATYR1916-LYS1922
ATYR1636-SER1642
ATYR1643-SER1649
ATYR1650-SER1656
ATYR1657-SER1663
ATYR1664-SER1670
ATYR1727-SER1733
ATYR1734-SER1740
ATYR1741-ASN1747
ATYR1748-ASN1754
ATYR1860-LYS1866
ATYR1867-LYS1873
ATYR1874-THR1880
ATYR1909-THR1915
ATYR1923-THR1929
ATYR1947-THR1953
MTYR1622-SER1628

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues25
DetailsZN_FING: C4-type => ECO:0000255
ChainResidueDetails
eVAL930-LEU950
ICYS17-CYS42
gSER809

site_idSWS_FT_FI2
Number of Residues42
DetailsZN_FING: TFIIS-type => ECO:0000255|PROSITE-ProRule:PRU00472
ChainResidueDetails
qASP85
qASN117
qHIS167
qHIS241
IGLU82-THR124
qHIS59

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P27999
ChainResidueDetails
ICYS17
ICYS20
ICYS39
ICYS42

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00472
ChainResidueDetails
ICYS86
ICYS89
ICYS114
ICYS119

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0000250|UniProtKB:P36954
ChainResidueDetails
ZSER804
IMET1
aSER924

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
aSER307

site_idSWS_FT_FI7
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:20068231
ChainResidueDetails
aSER1318

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q6P4S8
ChainResidueDetails
aSER1335
aSER1336

site_idSWS_FT_FI9
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
ZTHR806
ZTHR791

site_idSWS_FT_FI10
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
ZTHR1034

site_idSWS_FT_FI11
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
ZLYS143

site_idSWS_FT_FI12
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ZLYS1037

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon