7OIM
Mouse RNF213, with mixed nucleotides bound
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0001525 | biological_process | angiogenesis |
| A | 0002040 | biological_process | sprouting angiogenesis |
| A | 0002376 | biological_process | immune system process |
| A | 0004842 | molecular_function | ubiquitin-protein transferase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005730 | cellular_component | nucleolus |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005811 | cellular_component | lipid droplet |
| A | 0005829 | cellular_component | cytosol |
| A | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
| A | 0006629 | biological_process | lipid metabolic process |
| A | 0016567 | biological_process | protein ubiquitination |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0016887 | molecular_function | ATP hydrolysis activity |
| A | 0019216 | biological_process | regulation of lipid metabolic process |
| A | 0042742 | biological_process | defense response to bacterium |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0051865 | biological_process | protein autoubiquitination |
| A | 0061630 | molecular_function | ubiquitin protein ligase activity |
| A | 0070534 | biological_process | protein K63-linked ubiquitination |
| A | 0098792 | biological_process | xenophagy |
| A | 0120323 | biological_process | lipid ubiquitination |
| A | 0140042 | biological_process | lipid droplet formation |
| A | 2000051 | biological_process | negative regulation of non-canonical Wnt signaling pathway |
Functional Information from PROSITE/UniProt
| site_id | PS00518 |
| Number of Residues | 10 |
| Details | ZF_RING_1 Zinc finger RING-type signature. CdHvYClrCI |
| Chain | Residue | Details |
| A | CYS3962-ILE3971 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 39 |
| Details | ZN_FING: RING-type => ECO:0000255|PROSITE-ProRule:PRU00175 |
| Chain | Residue | Details |
| A | CYS3947-LEU3986 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 72 |
| Details | ZN_FING: RZ-type => ECO:0000255|PROSITE-ProRule:PRU01325 |
| Chain | Residue | Details |
| A | MET4429-THR4501 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | ACT_SITE: Nucleophile; for E3 ubiquitin-lipopolysaccharide ligase activity => ECO:0000255|PROSITE-ProRule:PRU01325 |
| Chain | Residue | Details |
| A | CYS4462 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 11 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:32573437, ECO:0007744|PDB:6TAX, ECO:0007744|PDB:6TAY |
| Chain | Residue | Details |
| A | GLU2060 | |
| A | ASP2116 | |
| A | CYS3947 | |
| A | CYS3950 | |
| A | CYS3962 | |
| A | HIS3964 | |
| A | CYS3967 | |
| A | CYS3970 | |
| A | CYS3982 | |
| A | CYS3985 | |
| A | GLY1957 |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:32573437, ECO:0007744|PDB:6TAY |
| Chain | Residue | Details |
| A | ALA2114 | |
| A | LYS2460 |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | BINDING: BINDING => ECO:0000269|PubMed:32573437, ECO:0007744|PDB:6TAX |
| Chain | Residue | Details |
| A | ARG2177 | |
| A | SER2535 |
| site_id | SWS_FT_FI7 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01325 |
| Chain | Residue | Details |
| A | CYS4451 | |
| A | HIS4455 | |
| A | CYS4471 | |
| A | CYS4474 |
| site_id | SWS_FT_FI8 |
| Number of Residues | 1 |
| Details | MOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q63HN8 |
| Chain | Residue | Details |
| A | SER2234 |
| site_id | SWS_FT_FI9 |
| Number of Residues | 2 |
| Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0000250|UniProtKB:Q63HN8 |
| Chain | Residue | Details |
| A | LYS1128 |
