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7OIK

Mouse RNF213:UBE2L3 transthiolation intermediate, chemically stabilized

Functional Information from GO Data
ChainGOidnamespacecontents
A0001525biological_processangiogenesis
A0002040biological_processsprouting angiogenesis
A0002376biological_processimmune system process
A0004842molecular_functionubiquitin-protein transferase activity
A0005524molecular_functionATP binding
A0005730cellular_componentnucleolus
A0005737cellular_componentcytoplasm
A0005811cellular_componentlipid droplet
A0005829cellular_componentcytosol
A0006511biological_processubiquitin-dependent protein catabolic process
A0006629biological_processlipid metabolic process
A0016567biological_processprotein ubiquitination
A0016740molecular_functiontransferase activity
A0016787molecular_functionhydrolase activity
A0016887molecular_functionATP hydrolysis activity
A0019216biological_processregulation of lipid metabolic process
A0042742biological_processdefense response to bacterium
A0046872molecular_functionmetal ion binding
A0051865biological_processprotein autoubiquitination
A0061630molecular_functionubiquitin protein ligase activity
A0070534biological_processprotein K63-linked ubiquitination
A0098792biological_processxenophagy
A0120323biological_processlipid ubiquitination
A0140042biological_processlipid droplet formation
A2000051biological_processnegative regulation of non-canonical Wnt signaling pathway
B0000151cellular_componentubiquitin ligase complex
B0000209biological_processprotein polyubiquitination
B0003713molecular_functiontranscription coactivator activity
B0003723molecular_functionRNA binding
B0004842molecular_functionubiquitin-protein transferase activity
B0005515molecular_functionprotein binding
B0005524molecular_functionATP binding
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006355biological_processregulation of DNA-templated transcription
B0006511biological_processubiquitin-dependent protein catabolic process
B0008283biological_processcell population proliferation
B0016567biological_processprotein ubiquitination
B0016740molecular_functiontransferase activity
B0019787molecular_functionubiquitin-like protein transferase activity
B0019899molecular_functionenzyme binding
B0031398biological_processpositive regulation of protein ubiquitination
B0031625molecular_functionubiquitin protein ligase binding
B0032446biological_processprotein modification by small protein conjugation
B0036211biological_processprotein modification process
B0044770biological_processcell cycle phase transition
B0045893biological_processpositive regulation of DNA-templated transcription
B0051443biological_processpositive regulation of ubiquitin-protein transferase activity
B0061631molecular_functionubiquitin conjugating enzyme activity
B0070979biological_processprotein K11-linked ubiquitination
B0071383biological_processcellular response to steroid hormone stimulus
B0071385biological_processcellular response to glucocorticoid stimulus
B0097027molecular_functionubiquitin-protein transferase activator activity
B0098793cellular_componentpresynapse
B1903955biological_processpositive regulation of protein targeting to mitochondrion
Functional Information from PROSITE/UniProt
site_idPS00183
Number of Residues16
DetailsUBC_1 Ubiquitin-conjugating (UBC) active site signature. YHPNIdek.GqVCLpvI
ChainResidueDetails
BTYR75-ILE90

site_idPS00518
Number of Residues10
DetailsZF_RING_1 Zinc finger RING-type signature. CdHvYClrCI
ChainResidueDetails
ACYS3962-ILE3971

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Glycyl thioester intermediate => ECO:0000255|PROSITE-ProRule:PRU00388, ECO:0000255|PROSITE-ProRule:PRU10133
ChainResidueDetails
BCYS86

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861
ChainResidueDetails
BLYS131

site_idSWS_FT_FI3
Number of Residues1
DetailsACT_SITE: Nucleophile; for E3 ubiquitin-lipopolysaccharide ligase activity => ECO:0000255|PROSITE-ProRule:PRU01325
ChainResidueDetails
ACYS4462

site_idSWS_FT_FI4
Number of Residues11
DetailsBINDING: BINDING => ECO:0000269|PubMed:32573437, ECO:0007744|PDB:6TAX, ECO:0007744|PDB:6TAY
ChainResidueDetails
AGLU2060
AASP2116
ACYS3947
ACYS3950
ACYS3962
AHIS3964
ACYS3967
ACYS3970
ACYS3982
ACYS3985
AGLY1957

site_idSWS_FT_FI5
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:32573437, ECO:0007744|PDB:6TAY
ChainResidueDetails
AALA2114
ALYS2460

site_idSWS_FT_FI6
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:32573437, ECO:0007744|PDB:6TAX
ChainResidueDetails
AARG2177
ASER2535

site_idSWS_FT_FI7
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01325
ChainResidueDetails
ACYS4451
AHIS4455
ACYS4471
ACYS4474

site_idSWS_FT_FI8
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q63HN8
ChainResidueDetails
ASER196
ASER2234

site_idSWS_FT_FI9
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0000250|UniProtKB:Q63HN8
ChainResidueDetails
ALYS1128

Catalytic Information from CSA
site_idMCSA1
Number of Residues1
DetailsM-CSA 438
ChainResidueDetails
BCYS86nucleofuge

219869

PDB entries from 2024-05-15

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