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7BRD

Crystal structure of Peptidyl-tRNA hydrolase from Klebsiella pneumoniae

Functional Information from GO Data
ChainGOidnamespacecontents
A0004045molecular_functionaminoacyl-tRNA hydrolase activity
A0005737cellular_componentcytoplasm
A0006412biological_processtranslation
A0016787molecular_functionhydrolase activity
B0004045molecular_functionaminoacyl-tRNA hydrolase activity
B0005737cellular_componentcytoplasm
B0006412biological_processtranslation
B0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue PGE A 701
ChainResidue
ALYS44
AARG51
AARG60
ATYR82

site_idAC2
Number of Residues3
Detailsbinding site for residue PEG A 702
ChainResidue
AARG34
AHIS35
ALYS123

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 703
ChainResidue
AASN126
AHOH846
AARG51
AILE52

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO A 704
ChainResidue
ASER157
AGLU158
AACT719
AHOH806
AHOH900
BLYS73

site_idAC5
Number of Residues4
Detailsbinding site for residue ACT A 705
ChainResidue
AGLU41
ATYR48
AHOH830
BSER122

site_idAC6
Number of Residues5
Detailsbinding site for residue ACT A 706
ChainResidue
AGLY13
AALA14
AGLU15
BHIS111
BHOH456

site_idAC7
Number of Residues3
Detailsbinding site for residue ACT A 707
ChainResidue
ALYS106
AGLY109
AGLY110

site_idAC8
Number of Residues3
Detailsbinding site for residue ACT A 708
ChainResidue
AGLN159
AASP163
AHOH929

site_idAC9
Number of Residues2
Detailsbinding site for residue EDO A 709
ChainResidue
ALYS104
AARG134

site_idAD1
Number of Residues3
Detailsbinding site for residue EDO A 710
ChainResidue
AALA156
AHOH884
AHOH930

site_idAD2
Number of Residues1
Detailsbinding site for residue ACT A 711
ChainResidue
AARG20

site_idAD3
Number of Residues1
Detailsbinding site for residue ACT A 712
ChainResidue
AARG34

site_idAD4
Number of Residues4
Detailsbinding site for residue CL A 713
ChainResidue
AASN11
AASN115
BALA156
BHOH493

site_idAD5
Number of Residues4
Detailsbinding site for residue CL A 714
ChainResidue
ALYS145
AGLY148
BLYS153
BHOH516

site_idAD6
Number of Residues4
Detailsbinding site for residue CL A 715
ChainResidue
AILE137
APHE149
AGLU158
AHOH927

site_idAD7
Number of Residues2
Detailsbinding site for residue CL A 716
ChainResidue
AGLU95
AHOH889

site_idAD8
Number of Residues4
Detailsbinding site for residue SO4 A 717
ChainResidue
AARG187
AHOH802
BARG171
BARG187

site_idAD9
Number of Residues8
Detailsbinding site for residue SO4 A 718
ChainResidue
AGLU41
AGLU42
ASER43
AACT719
AHOH808
AHOH827
AHOH857
AHOH884

site_idAE1
Number of Residues2
Detailsbinding site for residue ACT A 719
ChainResidue
AEDO704
ASO4718

site_idAE2
Number of Residues6
Detailsbinding site for residue PEG B 301
ChainResidue
AASN129
AHOH880
BTHR80
BARG83
BHOH403
BHOH429

site_idAE3
Number of Residues4
Detailsbinding site for residue EDO B 302
ChainResidue
BGLY110
BHIS111
BGLY112
BHOH409

site_idAE4
Number of Residues2
Detailsbinding site for residue EDO B 303
ChainResidue
BLYS104
BHIS189

site_idAE5
Number of Residues3
Detailsbinding site for residue EDO B 304
ChainResidue
BGLU41
BSER43
BLYS44

site_idAE6
Number of Residues4
Detailsbinding site for residue BME B 305
ChainResidue
BLYS106
BGLY109
BGLY110
BHOH520

site_idAE7
Number of Residues5
Detailsbinding site for residue EDO B 306
ChainResidue
BLEU96
BLEU98
BPRO99
BGLY138
BHIS139

site_idAE8
Number of Residues2
Detailsbinding site for residue ACT B 307
ChainResidue
BLYS104
BARG134

site_idAE9
Number of Residues1
Detailsbinding site for residue ACT B 308
ChainResidue
BASP29

site_idAF1
Number of Residues4
Detailsbinding site for residue SO4 B 309
ChainResidue
BALA17
BALA18
BASN22
BTRP26

site_idAF2
Number of Residues5
Detailsbinding site for residue SO4 B 310
ChainResidue
BLYS145
BVAL146
BVAL147
BHOH489
AGLN194

Functional Information from PROSITE/UniProt
site_idPS01195
Number of Residues14
DetailsPEPT_TRNA_HYDROL_1 Peptidyl-tRNA hydrolase signature 1. YaaTRHNaGawYVD
ChainResidueDetails
ATYR16-ASP29

site_idPS01196
Number of Residues11
DetailsPEPT_TRNA_HYDROL_2 Peptidyl-tRNA hydrolase signature 2. GhggHNGLKDI
ChainResidueDetails
AGLY110-ILE120

220113

PDB entries from 2024-05-22

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