Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YNX

Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - Fo-subcomplex

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
A0005739cellular_componentmitochondrion
A0016020cellular_componentmembrane
B0016020cellular_componentmembrane
C0005739cellular_componentmitochondrion
C0016020cellular_componentmembrane
D0000276cellular_componentmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
D0015078molecular_functionproton transmembrane transporter activity
D0015986biological_processproton motive force-driven ATP synthesis
D1902600biological_processproton transmembrane transport
E0005739cellular_componentmitochondrion
E0016491molecular_functionoxidoreductase activity
E0070221biological_processsulfide oxidation, using sulfide:quinone oxidoreductase
E0070224molecular_functionsulfide:quinone oxidoreductase activity
E0071949molecular_functionFAD binding
G0016020cellular_componentmembrane
I0016020cellular_componentmembrane
K0016020cellular_componentmembrane
a0005739cellular_componentmitochondrion
a0016020cellular_componentmembrane
b0016020cellular_componentmembrane
c0005739cellular_componentmitochondrion
c0016020cellular_componentmembrane
d0000276cellular_componentmitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
d0015078molecular_functionproton transmembrane transporter activity
d0015986biological_processproton motive force-driven ATP synthesis
d1902600biological_processproton transmembrane transport
e0005739cellular_componentmitochondrion
e0016491molecular_functionoxidoreductase activity
e0070221biological_processsulfide oxidation, using sulfide:quinone oxidoreductase
e0070224molecular_functionsulfide:quinone oxidoreductase activity
e0071949molecular_functionFAD binding
g0016020cellular_componentmembrane
i0016020cellular_componentmembrane
k0016020cellular_componentmembrane
t0005739cellular_componentmitochondrion
t0016787molecular_functionhydrolase activity
t0044255biological_processcellular lipid metabolic process
t0052689molecular_functioncarboxylic ester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue CDL a 501
ChainResidue
BCDL401
cCYS34
cTHR35
fILE121
iTYR60
iGLY102
iLEU105
iTRP109
iUQ8303
lPRO143
lPHE144
aGLU53
lCDL301
aSER54
aPHE184
aPHE190
aMET254
aLEU255
bCDL401
cILE32

site_idAC2
Number of Residues18
Detailsbinding site for residue CDL b 401
ChainResidue
BCDL401
SGLN23
aCDL501
bSER107
bPHE108
bALA109
bLEU116
bTRP119
bGLY120
bPHE122
bPHE123
fTRP78
fLEU85
fTYR92
fLYS96
fALA100
fCDL303
lCDL301

site_idAC3
Number of Residues13
Detailsbinding site for residue CDL b 402
ChainResidue
FGLY66
FLYS67
aLEU390
aVAL401
bPHE163
bMET164
bPRO165
bLEU166
bLEU167
bTYR171
dTRP207
dPC1301
fCDL302

site_idAC4
Number of Residues13
Detailsbinding site for residue PC1 d 301
ChainResidue
FARG64
aGLU220
aTYR231
aLEU234
aTRP409
bCDL402
dTRP207
dGLY208
dLYS209
dLYS210
fLEU107
fCDL302
hARG50

site_idAC5
Number of Residues5
Detailsbinding site for residue PO4 f 301
ChainResidue
bSER102
fARG77
fASN81
fARG84
fLYS96

site_idAC6
Number of Residues23
Detailsbinding site for residue CDL f 302
ChainResidue
aLEU194
aASP209
aSER210
aLEU213
aGLY217
aGLU220
aALA239
aTYR240
aPHE242
aPHE246
aTRP251
aVAL396
aCYS397
aPHE400
bGLN168
bARG169
bARG172
bCDL402
cTHR43
dPC1301
fLYS104
fSER106
fLEU107

site_idAC7
Number of Residues18
Detailsbinding site for residue CDL f 303
ChainResidue
bARG112
bLEU115
bTRP119
bCDL401
fLYS75
fARG76
fARG77
fTRP78
fPHE79
lCDL301
lPEE302
AGLY380
APHE382
AILE389
BGLN150
BTYR153
BSER161
BMET162

site_idAC8
Number of Residues18
Detailsbinding site for residue CDL f 304
ChainResidue
AGLY189
APHE190
ACDL501
BCDL401
BCDL402
FMET90
FALA100
FALA103
FLYS104
FPRO105
FPHE113
FPHE116
FPHE120
SARG30
bLYS113
bPHE114
fHIS36
fTHR37

site_idAC9
Number of Residues10
Detailsbinding site for residue PC1 i 301
ChainResidue
gPHE34
gTYR46
gTRP48
gARG87
gGLY91
gMET92
gTRP95
iTHR78
iASN80
pCDL201

site_idAD1
Number of Residues7
Detailsbinding site for residue CDL i 302
ChainResidue
gTYR80
gASP83
gTRP88
iSER72
iPHE73
iVAL74
iLYS75

site_idAD2
Number of Residues12
Detailsbinding site for residue UQ8 i 303
ChainResidue
aTRP177
aPHE184
aCDL501
iASN57
iTYR60
iGLN64
iLEU103
iPHE106
lGLY103
lLEU107
mASN94
rCDL201

site_idAD3
Number of Residues11
Detailsbinding site for residue CDL k 201
ChainResidue
aILE300
aSER301
aSER302
aVAL303
eGLN389
eARG421
kILE36
kALA37
kGLY40
kARG43
kMET57

site_idAD4
Number of Residues15
Detailsbinding site for residue CDL k 202
ChainResidue
aLEU282
aGLY286
aILE287
gPHE137
gLEU138
gTHR141
gARG144
gASP145
gPC1303
kARG17
kLYS18
kVAL47
kARG48
kCYS56
kPHE59

site_idAD5
Number of Residues10
Detailsbinding site for residue CDL k 203
ChainResidue
LLYS32
LSER42
LPRO43
LVAL44
LPHE45
LARG47
kTHR111
kLEU114
kMET143
kASN146

site_idAD6
Number of Residues16
Detailsbinding site for residue ATP g 301
ChainResidue
aHIS423
gLYS47
gASP151
gPHE152
gLYS153
gGLU154
gTHR155
gMG302
hILE76
hCYS78
hASN80
hHIS82
kSER10
kASN12
kLEU13
kVAL15

site_idAD7
Number of Residues3
Detailsbinding site for residue MG g 302
ChainResidue
gASP151
gPHE152
gATP301

site_idAD8
Number of Residues13
Detailsbinding site for residue PC1 g 303
ChainResidue
aTYR283
aASP284
gASN107
gLEU136
gPHE137
gTYR140
gARG144
iLEU77
iTHR78
iHIS79
kLYS18
kCDL202
pCDL201

site_idAD9
Number of Residues12
Detailsbinding site for residue CDL j 301
ChainResidue
jARG38
jILE41
jASN45
jPRO46
jPHE47
jARG63
jCDL302
lLYS100
lPHE101
lPHE105
lSER108
lLYS133

site_idAE1
Number of Residues11
Detailsbinding site for residue CDL j 302
ChainResidue
ATHR371
ATYR372
iLEU12
iPHE37
jLYS26
jGLN30
jTHR31
jLEU34
jARG38
jCDL301
lLYS133

site_idAE2
Number of Residues21
Detailsbinding site for residue CDL l 301
ChainResidue
aTYR58
aTYR60
aCDL501
bCDL401
fILE86
fLYS87
fCDL303
iARG42
iVAL46
iHIS47
iPRO48
iILE49
iMET52
lTYR109
lARG113
lARG123
lVAL124
lMET127
lPHE130
lPRO141
rCDL201

site_idAE3
Number of Residues10
Detailsbinding site for residue PEE l 302
ChainResidue
AASP345
ATHR347
ASER349
ALEU378
APHE382
ATRP385
fCDL303
jLYS98
lTYR128
lGLY139

site_idAE4
Number of Residues10
Detailsbinding site for residue PEE l 303
ChainResidue
jARG57
lTHR91
lPHE92
lTYR93
lTRP96
mHIS74
mSER81
mPHE119
mILE122
mTYR126

site_idAE5
Number of Residues12
Detailsbinding site for residue CDL l 304
ChainResidue
KASN105
KTHR111
KLEU114
KMET143
KASN146
lGLU30
lLYS32
lSER42
lPRO43
lVAL44
lPHE45
lARG47

site_idAE6
Number of Residues12
Detailsbinding site for residue CDL p 201
ChainResidue
gTRP96
gARG99
gPHE103
gVAL108
gTYR109
gPC1303
iPC1301
pMET53
pGLU54
pVAL56
pASN57
pARG70

site_idAE7
Number of Residues21
Detailsbinding site for residue CDL r 201
ChainResidue
aTRP177
bHIS78
iASN2
iHIS47
iASN50
iARG51
iPHE53
iILE54
iPHE106
iUQ8303
lTYR109
lLEU110
lGLU114
lCDL301
mSER82
mPHE89
mTYR93
rGLU31
rSER38
rILE39
rTYR42

site_idAE8
Number of Residues26
Detailsbinding site for residue NAD e 900
ChainResidue
eVAL43
eGLY44
eALA45
eASN46
eLEU47
eSER68
ePHE69
eASP70
eGLN71
eTYR77
eALA111
eVAL112
eALA138
eTHR139
eHIS143
eASN165
eALA200
eGLY201
eGLU204
eCYS205
eGLN304
ePHE306
eASP339
eLYS347
eTHR348
ePHE349

site_idAE9
Number of Residues23
Detailsbinding site for residue CDL A 501
ChainResidue
ASER54
APHE184
ALEU185
APHE187
APHE190
ATRP251
AMET254
ALEU255
BPHE127
BCDL402
CPHE31
CCYS34
CTHR35
FILE93
FLEU118
FLYS122
ITYR60
IPHE106
ITRP109
IUQ8303
LPHE144
LCDL301
fCDL304

site_idAF1
Number of Residues20
Detailsbinding site for residue CDL B 401
ChainResidue
BLYS113
BPHE114
BTHR117
FHIS36
FTHR37
SSER26
SALA28
aCDL501
bPHE123
bMET138
bTRP145
bCDL401
fALA103
fPRO105
fVAL109
fPHE113
fPHE116
fTHR117
fPHE120
fCDL304

site_idAF2
Number of Residues20
Detailsbinding site for residue CDL B 402
ChainResidue
ACDL501
BSER107
BPHE108
BALA109
BTRP119
BPHE122
BPHE123
BCDL405
FTRP78
FLYS96
FLYS99
FALA100
JPEE303
LCDL301
SLEU27
SALA28
SARG30
SPRO31
STYR46
fCDL304

site_idAF3
Number of Residues22
Detailsbinding site for residue CDL B 403
ChainResidue
ALEU194
AASP209
AGLY217
AGLU220
AALA239
ATYR240
AVAL241
APHE242
APHE246
ATRP251
AVAL396
ACYS397
BGLN168
BARG169
BARG172
BCDL404
CMET36
DPC1301
FLYS104
FSER106
FLEU107
FILE108

site_idAF4
Number of Residues12
Detailsbinding site for residue CDL B 404
ChainResidue
AVAL401
BMET164
BPRO165
BLEU166
BLEU167
BTYR171
BCDL403
DTRP207
DPC1301
fGLY66
fLYS67
fLYS68

site_idAF5
Number of Residues15
Detailsbinding site for residue CDL B 405
ChainResidue
BARG112
BLEU115
BTRP119
BCDL402
FLYS75
FARG76
FARG77
FTRP78
FPHE79
JPEE303
LCDL301
aGLY380
bTYR153
bSER161
bMET162

site_idAF6
Number of Residues5
Detailsbinding site for residue PO4 F 900
ChainResidue
BSER102
FARG77
FASN81
FARG84
FLYS96

site_idAF7
Number of Residues8
Detailsbinding site for residue CDL I 302
ChainResidue
GTYR80
GASP83
GTRP88
ISER72
IPHE73
IVAL74
ILYS75
IPHE93

site_idAF8
Number of Residues13
Detailsbinding site for residue UQ8 I 303
ChainResidue
ATRP177
AILE178
ALEU181
ACDL501
IASN57
ITYR60
IGLN64
ILEU103
IPHE106
ICDL301
LGLY106
LLEU110
MASN94

site_idAF9
Number of Residues12
Detailsbinding site for residue CDL K 201
ChainResidue
AILE300
ASER301
ASER302
AVAL303
EGLN389
ETRP417
EARG421
KILE36
KALA37
KGLY40
KARG43
KMET57

site_idAG1
Number of Residues15
Detailsbinding site for residue CDL K 202
ChainResidue
ALEU282
AGLY286
AILE287
GPHE137
GLEU138
GTHR141
GARG144
GASP145
GPC1304
KARG17
KLYS18
KVAL47
KARG48
KALA52
KCYS56

site_idAG2
Number of Residues16
Detailsbinding site for residue ATP G 301
ChainResidue
AHIS423
GLYS47
GASP151
GPHE152
GLYS153
GGLU154
GTHR155
GMG302
HILE76
HCYS78
HASN80
HHIS82
KSER10
KASN12
KLEU13
KVAL15

site_idAG3
Number of Residues4
Detailsbinding site for residue MG G 302
ChainResidue
GLYS47
GASP151
GPHE152
GATP301

site_idAG4
Number of Residues11
Detailsbinding site for residue PC1 G 303
ChainResidue
GPHE34
GTYR46
GTRP48
GARG87
GTRP88
GGLY91
GMET92
GTRP95
ITHR78
IASN80
PCDL201

site_idAG5
Number of Residues15
Detailsbinding site for residue CDL J 301
ChainResidue
JARG38
JILE41
JASN45
JPRO46
JPHE47
JTYR49
JARG63
JCDL302
LLYS100
LPHE101
LGLY104
LPHE105
LSER108
LPHE130
LLYS133

site_idAG6
Number of Residues11
Detailsbinding site for residue CDL J 302
ChainResidue
IPHE37
JLYS26
JGLN30
JTHR31
JLEU34
JARG38
JGLY65
JCDL301
LLYS133
aTHR371
aTYR372

site_idAG7
Number of Residues9
Detailsbinding site for residue PEE J 304
ChainResidue
JARG57
LTHR91
LPHE92
LTYR93
LTRP96
MHIS74
MSER81
MPHE119
MTYR126

site_idAG8
Number of Residues22
Detailsbinding site for residue CDL L 301
ChainResidue
ATYR58
AILE178
ACDL501
BCDL402
BCDL405
FLEU85
FILE86
FLYS87
IARG42
IVAL46
IHIS47
IPRO48
IILE49
IMET52
ICDL301
LTYR109
LARG113
LARG123
LVAL124
LMET127
LPHE130
LPRO143

site_idAG9
Number of Residues13
Detailsbinding site for residue CDL P 201
ChainResidue
GTRP96
GARG99
GPHE103
GTYR109
GPC1303
GPC1304
PPHE49
PTRP50
PMET53
PGLU54
PASN57
PILE67
PARG70

site_idAH1
Number of Residues28
Detailsbinding site for residue NAD E 900
ChainResidue
EVAL43
EGLY44
EALA45
EASN46
ELEU47
ESER68
EPHE69
EASP70
EGLN71
ETYR77
EALA111
EVAL112
EALA138
ETHR139
EGLY140
EHIS143
EASN165
EALA200
EGLY201
EGLU204
ECYS205
EGLN304
EPHE306
EGLY338
EASP339
ELYS347
ETHR348
EPHE349

site_idAH2
Number of Residues14
Detailsbinding site for Di-peptide PC1 D 301 and GLY D 208
ChainResidue
AGLU220
ATYR231
ALEU234
APHE404
APHE408
ATRP409
BCDL403
BCDL404
DALA206
DTRP207
DLYS209
DLYS210
HARG50
fARG64

site_idAH3
Number of Residues15
Detailsbinding site for Di-peptide PC1 G 304 and ARG G 144
ChainResidue
ATYR283
GASN107
GLEU136
GTYR140
GTHR141
GARG142
GILE143
GASP145
GLYS146
GTHR147
GLEU148
ILEU77
IHIS79
KCDL202
PCDL201

site_idAH4
Number of Residues24
Detailsbinding site for Di-peptide CDL I 301 and ASN I 50
ChainResidue
ATRP177
ALEU181
BHIS78
IASN2
IHIS47
IPRO48
IILE49
IARG51
IMET52
IPHE53
IILE54
IPHE106
IUQ8303
LTYR109
LARG113
LGLU114
LCDL301
MPHE89
MTYR93
RGLU31
RLYS34
RILE35
RSER38
RILE39

site_idAH5
Number of Residues17
Detailsbinding site for Di-peptide PEE J 303 and LYS J 98
ChainResidue
BCDL402
BCDL405
JARG96
JTHR97
JALA99
JASN100
LTYR128
LGLY139
LPRO141
aASP345
aILE346
aTHR347
aSER349
aTYR373
aILE374
aPRO379
bPHE149

Functional Information from PROSITE/UniProt
site_idPS00213
Number of Residues12
DetailsLIPOCALIN Lipocalin signature. NGG..RFLGFWLSM
ChainResidueDetails
PASN42-MET53

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon