6YNX
Cryo-EM structure of Tetrahymena thermophila mitochondrial ATP synthase - Fo-subcomplex
This is a non-PDB format compatible entry.
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0005739 | cellular_component | mitochondrion |
A | 0016020 | cellular_component | membrane |
B | 0016020 | cellular_component | membrane |
C | 0005739 | cellular_component | mitochondrion |
C | 0016020 | cellular_component | membrane |
D | 0000276 | cellular_component | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) |
D | 0015078 | molecular_function | proton transmembrane transporter activity |
D | 0015986 | biological_process | proton motive force-driven ATP synthesis |
D | 1902600 | biological_process | proton transmembrane transport |
E | 0005739 | cellular_component | mitochondrion |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0070221 | biological_process | sulfide oxidation, using sulfide:quinone oxidoreductase |
E | 0070224 | molecular_function | sulfide:quinone oxidoreductase activity |
E | 0071949 | molecular_function | FAD binding |
G | 0016020 | cellular_component | membrane |
I | 0016020 | cellular_component | membrane |
K | 0016020 | cellular_component | membrane |
a | 0005739 | cellular_component | mitochondrion |
a | 0016020 | cellular_component | membrane |
b | 0016020 | cellular_component | membrane |
c | 0005739 | cellular_component | mitochondrion |
c | 0016020 | cellular_component | membrane |
d | 0000276 | cellular_component | mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) |
d | 0015078 | molecular_function | proton transmembrane transporter activity |
d | 0015986 | biological_process | proton motive force-driven ATP synthesis |
d | 1902600 | biological_process | proton transmembrane transport |
e | 0005739 | cellular_component | mitochondrion |
e | 0016491 | molecular_function | oxidoreductase activity |
e | 0070221 | biological_process | sulfide oxidation, using sulfide:quinone oxidoreductase |
e | 0070224 | molecular_function | sulfide:quinone oxidoreductase activity |
e | 0071949 | molecular_function | FAD binding |
g | 0016020 | cellular_component | membrane |
i | 0016020 | cellular_component | membrane |
k | 0016020 | cellular_component | membrane |
t | 0005739 | cellular_component | mitochondrion |
t | 0016787 | molecular_function | hydrolase activity |
t | 0044255 | biological_process | cellular lipid metabolic process |
t | 0052689 | molecular_function | carboxylic ester hydrolase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 20 |
Details | binding site for residue CDL a 501 |
Chain | Residue |
B | CDL401 |
c | CYS34 |
c | THR35 |
f | ILE121 |
i | TYR60 |
i | GLY102 |
i | LEU105 |
i | TRP109 |
i | UQ8303 |
l | PRO143 |
l | PHE144 |
a | GLU53 |
l | CDL301 |
a | SER54 |
a | PHE184 |
a | PHE190 |
a | MET254 |
a | LEU255 |
b | CDL401 |
c | ILE32 |
site_id | AC2 |
Number of Residues | 18 |
Details | binding site for residue CDL b 401 |
Chain | Residue |
B | CDL401 |
S | GLN23 |
a | CDL501 |
b | SER107 |
b | PHE108 |
b | ALA109 |
b | LEU116 |
b | TRP119 |
b | GLY120 |
b | PHE122 |
b | PHE123 |
f | TRP78 |
f | LEU85 |
f | TYR92 |
f | LYS96 |
f | ALA100 |
f | CDL303 |
l | CDL301 |
site_id | AC3 |
Number of Residues | 13 |
Details | binding site for residue CDL b 402 |
Chain | Residue |
F | GLY66 |
F | LYS67 |
a | LEU390 |
a | VAL401 |
b | PHE163 |
b | MET164 |
b | PRO165 |
b | LEU166 |
b | LEU167 |
b | TYR171 |
d | TRP207 |
d | PC1301 |
f | CDL302 |
site_id | AC4 |
Number of Residues | 13 |
Details | binding site for residue PC1 d 301 |
Chain | Residue |
F | ARG64 |
a | GLU220 |
a | TYR231 |
a | LEU234 |
a | TRP409 |
b | CDL402 |
d | TRP207 |
d | GLY208 |
d | LYS209 |
d | LYS210 |
f | LEU107 |
f | CDL302 |
h | ARG50 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue PO4 f 301 |
Chain | Residue |
b | SER102 |
f | ARG77 |
f | ASN81 |
f | ARG84 |
f | LYS96 |
site_id | AC6 |
Number of Residues | 23 |
Details | binding site for residue CDL f 302 |
Chain | Residue |
a | LEU194 |
a | ASP209 |
a | SER210 |
a | LEU213 |
a | GLY217 |
a | GLU220 |
a | ALA239 |
a | TYR240 |
a | PHE242 |
a | PHE246 |
a | TRP251 |
a | VAL396 |
a | CYS397 |
a | PHE400 |
b | GLN168 |
b | ARG169 |
b | ARG172 |
b | CDL402 |
c | THR43 |
d | PC1301 |
f | LYS104 |
f | SER106 |
f | LEU107 |
site_id | AC7 |
Number of Residues | 18 |
Details | binding site for residue CDL f 303 |
Chain | Residue |
b | ARG112 |
b | LEU115 |
b | TRP119 |
b | CDL401 |
f | LYS75 |
f | ARG76 |
f | ARG77 |
f | TRP78 |
f | PHE79 |
l | CDL301 |
l | PEE302 |
A | GLY380 |
A | PHE382 |
A | ILE389 |
B | GLN150 |
B | TYR153 |
B | SER161 |
B | MET162 |
site_id | AC8 |
Number of Residues | 18 |
Details | binding site for residue CDL f 304 |
Chain | Residue |
A | GLY189 |
A | PHE190 |
A | CDL501 |
B | CDL401 |
B | CDL402 |
F | MET90 |
F | ALA100 |
F | ALA103 |
F | LYS104 |
F | PRO105 |
F | PHE113 |
F | PHE116 |
F | PHE120 |
S | ARG30 |
b | LYS113 |
b | PHE114 |
f | HIS36 |
f | THR37 |
site_id | AC9 |
Number of Residues | 10 |
Details | binding site for residue PC1 i 301 |
Chain | Residue |
g | PHE34 |
g | TYR46 |
g | TRP48 |
g | ARG87 |
g | GLY91 |
g | MET92 |
g | TRP95 |
i | THR78 |
i | ASN80 |
p | CDL201 |
site_id | AD1 |
Number of Residues | 7 |
Details | binding site for residue CDL i 302 |
Chain | Residue |
g | TYR80 |
g | ASP83 |
g | TRP88 |
i | SER72 |
i | PHE73 |
i | VAL74 |
i | LYS75 |
site_id | AD2 |
Number of Residues | 12 |
Details | binding site for residue UQ8 i 303 |
Chain | Residue |
a | TRP177 |
a | PHE184 |
a | CDL501 |
i | ASN57 |
i | TYR60 |
i | GLN64 |
i | LEU103 |
i | PHE106 |
l | GLY103 |
l | LEU107 |
m | ASN94 |
r | CDL201 |
site_id | AD3 |
Number of Residues | 11 |
Details | binding site for residue CDL k 201 |
Chain | Residue |
a | ILE300 |
a | SER301 |
a | SER302 |
a | VAL303 |
e | GLN389 |
e | ARG421 |
k | ILE36 |
k | ALA37 |
k | GLY40 |
k | ARG43 |
k | MET57 |
site_id | AD4 |
Number of Residues | 15 |
Details | binding site for residue CDL k 202 |
Chain | Residue |
a | LEU282 |
a | GLY286 |
a | ILE287 |
g | PHE137 |
g | LEU138 |
g | THR141 |
g | ARG144 |
g | ASP145 |
g | PC1303 |
k | ARG17 |
k | LYS18 |
k | VAL47 |
k | ARG48 |
k | CYS56 |
k | PHE59 |
site_id | AD5 |
Number of Residues | 10 |
Details | binding site for residue CDL k 203 |
Chain | Residue |
L | LYS32 |
L | SER42 |
L | PRO43 |
L | VAL44 |
L | PHE45 |
L | ARG47 |
k | THR111 |
k | LEU114 |
k | MET143 |
k | ASN146 |
site_id | AD6 |
Number of Residues | 16 |
Details | binding site for residue ATP g 301 |
Chain | Residue |
a | HIS423 |
g | LYS47 |
g | ASP151 |
g | PHE152 |
g | LYS153 |
g | GLU154 |
g | THR155 |
g | MG302 |
h | ILE76 |
h | CYS78 |
h | ASN80 |
h | HIS82 |
k | SER10 |
k | ASN12 |
k | LEU13 |
k | VAL15 |
site_id | AD7 |
Number of Residues | 3 |
Details | binding site for residue MG g 302 |
Chain | Residue |
g | ASP151 |
g | PHE152 |
g | ATP301 |
site_id | AD8 |
Number of Residues | 13 |
Details | binding site for residue PC1 g 303 |
Chain | Residue |
a | TYR283 |
a | ASP284 |
g | ASN107 |
g | LEU136 |
g | PHE137 |
g | TYR140 |
g | ARG144 |
i | LEU77 |
i | THR78 |
i | HIS79 |
k | LYS18 |
k | CDL202 |
p | CDL201 |
site_id | AD9 |
Number of Residues | 12 |
Details | binding site for residue CDL j 301 |
Chain | Residue |
j | ARG38 |
j | ILE41 |
j | ASN45 |
j | PRO46 |
j | PHE47 |
j | ARG63 |
j | CDL302 |
l | LYS100 |
l | PHE101 |
l | PHE105 |
l | SER108 |
l | LYS133 |
site_id | AE1 |
Number of Residues | 11 |
Details | binding site for residue CDL j 302 |
Chain | Residue |
A | THR371 |
A | TYR372 |
i | LEU12 |
i | PHE37 |
j | LYS26 |
j | GLN30 |
j | THR31 |
j | LEU34 |
j | ARG38 |
j | CDL301 |
l | LYS133 |
site_id | AE2 |
Number of Residues | 21 |
Details | binding site for residue CDL l 301 |
Chain | Residue |
a | TYR58 |
a | TYR60 |
a | CDL501 |
b | CDL401 |
f | ILE86 |
f | LYS87 |
f | CDL303 |
i | ARG42 |
i | VAL46 |
i | HIS47 |
i | PRO48 |
i | ILE49 |
i | MET52 |
l | TYR109 |
l | ARG113 |
l | ARG123 |
l | VAL124 |
l | MET127 |
l | PHE130 |
l | PRO141 |
r | CDL201 |
site_id | AE3 |
Number of Residues | 10 |
Details | binding site for residue PEE l 302 |
Chain | Residue |
A | ASP345 |
A | THR347 |
A | SER349 |
A | LEU378 |
A | PHE382 |
A | TRP385 |
f | CDL303 |
j | LYS98 |
l | TYR128 |
l | GLY139 |
site_id | AE4 |
Number of Residues | 10 |
Details | binding site for residue PEE l 303 |
Chain | Residue |
j | ARG57 |
l | THR91 |
l | PHE92 |
l | TYR93 |
l | TRP96 |
m | HIS74 |
m | SER81 |
m | PHE119 |
m | ILE122 |
m | TYR126 |
site_id | AE5 |
Number of Residues | 12 |
Details | binding site for residue CDL l 304 |
Chain | Residue |
K | ASN105 |
K | THR111 |
K | LEU114 |
K | MET143 |
K | ASN146 |
l | GLU30 |
l | LYS32 |
l | SER42 |
l | PRO43 |
l | VAL44 |
l | PHE45 |
l | ARG47 |
site_id | AE6 |
Number of Residues | 12 |
Details | binding site for residue CDL p 201 |
Chain | Residue |
g | TRP96 |
g | ARG99 |
g | PHE103 |
g | VAL108 |
g | TYR109 |
g | PC1303 |
i | PC1301 |
p | MET53 |
p | GLU54 |
p | VAL56 |
p | ASN57 |
p | ARG70 |
site_id | AE7 |
Number of Residues | 21 |
Details | binding site for residue CDL r 201 |
Chain | Residue |
a | TRP177 |
b | HIS78 |
i | ASN2 |
i | HIS47 |
i | ASN50 |
i | ARG51 |
i | PHE53 |
i | ILE54 |
i | PHE106 |
i | UQ8303 |
l | TYR109 |
l | LEU110 |
l | GLU114 |
l | CDL301 |
m | SER82 |
m | PHE89 |
m | TYR93 |
r | GLU31 |
r | SER38 |
r | ILE39 |
r | TYR42 |
site_id | AE8 |
Number of Residues | 26 |
Details | binding site for residue NAD e 900 |
Chain | Residue |
e | VAL43 |
e | GLY44 |
e | ALA45 |
e | ASN46 |
e | LEU47 |
e | SER68 |
e | PHE69 |
e | ASP70 |
e | GLN71 |
e | TYR77 |
e | ALA111 |
e | VAL112 |
e | ALA138 |
e | THR139 |
e | HIS143 |
e | ASN165 |
e | ALA200 |
e | GLY201 |
e | GLU204 |
e | CYS205 |
e | GLN304 |
e | PHE306 |
e | ASP339 |
e | LYS347 |
e | THR348 |
e | PHE349 |
site_id | AE9 |
Number of Residues | 23 |
Details | binding site for residue CDL A 501 |
Chain | Residue |
A | SER54 |
A | PHE184 |
A | LEU185 |
A | PHE187 |
A | PHE190 |
A | TRP251 |
A | MET254 |
A | LEU255 |
B | PHE127 |
B | CDL402 |
C | PHE31 |
C | CYS34 |
C | THR35 |
F | ILE93 |
F | LEU118 |
F | LYS122 |
I | TYR60 |
I | PHE106 |
I | TRP109 |
I | UQ8303 |
L | PHE144 |
L | CDL301 |
f | CDL304 |
site_id | AF1 |
Number of Residues | 20 |
Details | binding site for residue CDL B 401 |
Chain | Residue |
B | LYS113 |
B | PHE114 |
B | THR117 |
F | HIS36 |
F | THR37 |
S | SER26 |
S | ALA28 |
a | CDL501 |
b | PHE123 |
b | MET138 |
b | TRP145 |
b | CDL401 |
f | ALA103 |
f | PRO105 |
f | VAL109 |
f | PHE113 |
f | PHE116 |
f | THR117 |
f | PHE120 |
f | CDL304 |
site_id | AF2 |
Number of Residues | 20 |
Details | binding site for residue CDL B 402 |
Chain | Residue |
A | CDL501 |
B | SER107 |
B | PHE108 |
B | ALA109 |
B | TRP119 |
B | PHE122 |
B | PHE123 |
B | CDL405 |
F | TRP78 |
F | LYS96 |
F | LYS99 |
F | ALA100 |
J | PEE303 |
L | CDL301 |
S | LEU27 |
S | ALA28 |
S | ARG30 |
S | PRO31 |
S | TYR46 |
f | CDL304 |
site_id | AF3 |
Number of Residues | 22 |
Details | binding site for residue CDL B 403 |
Chain | Residue |
A | LEU194 |
A | ASP209 |
A | GLY217 |
A | GLU220 |
A | ALA239 |
A | TYR240 |
A | VAL241 |
A | PHE242 |
A | PHE246 |
A | TRP251 |
A | VAL396 |
A | CYS397 |
B | GLN168 |
B | ARG169 |
B | ARG172 |
B | CDL404 |
C | MET36 |
D | PC1301 |
F | LYS104 |
F | SER106 |
F | LEU107 |
F | ILE108 |
site_id | AF4 |
Number of Residues | 12 |
Details | binding site for residue CDL B 404 |
Chain | Residue |
A | VAL401 |
B | MET164 |
B | PRO165 |
B | LEU166 |
B | LEU167 |
B | TYR171 |
B | CDL403 |
D | TRP207 |
D | PC1301 |
f | GLY66 |
f | LYS67 |
f | LYS68 |
site_id | AF5 |
Number of Residues | 15 |
Details | binding site for residue CDL B 405 |
Chain | Residue |
B | ARG112 |
B | LEU115 |
B | TRP119 |
B | CDL402 |
F | LYS75 |
F | ARG76 |
F | ARG77 |
F | TRP78 |
F | PHE79 |
J | PEE303 |
L | CDL301 |
a | GLY380 |
b | TYR153 |
b | SER161 |
b | MET162 |
site_id | AF6 |
Number of Residues | 5 |
Details | binding site for residue PO4 F 900 |
Chain | Residue |
B | SER102 |
F | ARG77 |
F | ASN81 |
F | ARG84 |
F | LYS96 |
site_id | AF7 |
Number of Residues | 8 |
Details | binding site for residue CDL I 302 |
Chain | Residue |
G | TYR80 |
G | ASP83 |
G | TRP88 |
I | SER72 |
I | PHE73 |
I | VAL74 |
I | LYS75 |
I | PHE93 |
site_id | AF8 |
Number of Residues | 13 |
Details | binding site for residue UQ8 I 303 |
Chain | Residue |
A | TRP177 |
A | ILE178 |
A | LEU181 |
A | CDL501 |
I | ASN57 |
I | TYR60 |
I | GLN64 |
I | LEU103 |
I | PHE106 |
I | CDL301 |
L | GLY106 |
L | LEU110 |
M | ASN94 |
site_id | AF9 |
Number of Residues | 12 |
Details | binding site for residue CDL K 201 |
Chain | Residue |
A | ILE300 |
A | SER301 |
A | SER302 |
A | VAL303 |
E | GLN389 |
E | TRP417 |
E | ARG421 |
K | ILE36 |
K | ALA37 |
K | GLY40 |
K | ARG43 |
K | MET57 |
site_id | AG1 |
Number of Residues | 15 |
Details | binding site for residue CDL K 202 |
Chain | Residue |
A | LEU282 |
A | GLY286 |
A | ILE287 |
G | PHE137 |
G | LEU138 |
G | THR141 |
G | ARG144 |
G | ASP145 |
G | PC1304 |
K | ARG17 |
K | LYS18 |
K | VAL47 |
K | ARG48 |
K | ALA52 |
K | CYS56 |
site_id | AG2 |
Number of Residues | 16 |
Details | binding site for residue ATP G 301 |
Chain | Residue |
A | HIS423 |
G | LYS47 |
G | ASP151 |
G | PHE152 |
G | LYS153 |
G | GLU154 |
G | THR155 |
G | MG302 |
H | ILE76 |
H | CYS78 |
H | ASN80 |
H | HIS82 |
K | SER10 |
K | ASN12 |
K | LEU13 |
K | VAL15 |
site_id | AG3 |
Number of Residues | 4 |
Details | binding site for residue MG G 302 |
Chain | Residue |
G | LYS47 |
G | ASP151 |
G | PHE152 |
G | ATP301 |
site_id | AG4 |
Number of Residues | 11 |
Details | binding site for residue PC1 G 303 |
Chain | Residue |
G | PHE34 |
G | TYR46 |
G | TRP48 |
G | ARG87 |
G | TRP88 |
G | GLY91 |
G | MET92 |
G | TRP95 |
I | THR78 |
I | ASN80 |
P | CDL201 |
site_id | AG5 |
Number of Residues | 15 |
Details | binding site for residue CDL J 301 |
Chain | Residue |
J | ARG38 |
J | ILE41 |
J | ASN45 |
J | PRO46 |
J | PHE47 |
J | TYR49 |
J | ARG63 |
J | CDL302 |
L | LYS100 |
L | PHE101 |
L | GLY104 |
L | PHE105 |
L | SER108 |
L | PHE130 |
L | LYS133 |
site_id | AG6 |
Number of Residues | 11 |
Details | binding site for residue CDL J 302 |
Chain | Residue |
I | PHE37 |
J | LYS26 |
J | GLN30 |
J | THR31 |
J | LEU34 |
J | ARG38 |
J | GLY65 |
J | CDL301 |
L | LYS133 |
a | THR371 |
a | TYR372 |
site_id | AG7 |
Number of Residues | 9 |
Details | binding site for residue PEE J 304 |
Chain | Residue |
J | ARG57 |
L | THR91 |
L | PHE92 |
L | TYR93 |
L | TRP96 |
M | HIS74 |
M | SER81 |
M | PHE119 |
M | TYR126 |
site_id | AG8 |
Number of Residues | 22 |
Details | binding site for residue CDL L 301 |
Chain | Residue |
A | TYR58 |
A | ILE178 |
A | CDL501 |
B | CDL402 |
B | CDL405 |
F | LEU85 |
F | ILE86 |
F | LYS87 |
I | ARG42 |
I | VAL46 |
I | HIS47 |
I | PRO48 |
I | ILE49 |
I | MET52 |
I | CDL301 |
L | TYR109 |
L | ARG113 |
L | ARG123 |
L | VAL124 |
L | MET127 |
L | PHE130 |
L | PRO143 |
site_id | AG9 |
Number of Residues | 13 |
Details | binding site for residue CDL P 201 |
Chain | Residue |
G | TRP96 |
G | ARG99 |
G | PHE103 |
G | TYR109 |
G | PC1303 |
G | PC1304 |
P | PHE49 |
P | TRP50 |
P | MET53 |
P | GLU54 |
P | ASN57 |
P | ILE67 |
P | ARG70 |
site_id | AH1 |
Number of Residues | 28 |
Details | binding site for residue NAD E 900 |
Chain | Residue |
E | VAL43 |
E | GLY44 |
E | ALA45 |
E | ASN46 |
E | LEU47 |
E | SER68 |
E | PHE69 |
E | ASP70 |
E | GLN71 |
E | TYR77 |
E | ALA111 |
E | VAL112 |
E | ALA138 |
E | THR139 |
E | GLY140 |
E | HIS143 |
E | ASN165 |
E | ALA200 |
E | GLY201 |
E | GLU204 |
E | CYS205 |
E | GLN304 |
E | PHE306 |
E | GLY338 |
E | ASP339 |
E | LYS347 |
E | THR348 |
E | PHE349 |
site_id | AH2 |
Number of Residues | 14 |
Details | binding site for Di-peptide PC1 D 301 and GLY D 208 |
Chain | Residue |
A | GLU220 |
A | TYR231 |
A | LEU234 |
A | PHE404 |
A | PHE408 |
A | TRP409 |
B | CDL403 |
B | CDL404 |
D | ALA206 |
D | TRP207 |
D | LYS209 |
D | LYS210 |
H | ARG50 |
f | ARG64 |
site_id | AH3 |
Number of Residues | 15 |
Details | binding site for Di-peptide PC1 G 304 and ARG G 144 |
Chain | Residue |
A | TYR283 |
G | ASN107 |
G | LEU136 |
G | TYR140 |
G | THR141 |
G | ARG142 |
G | ILE143 |
G | ASP145 |
G | LYS146 |
G | THR147 |
G | LEU148 |
I | LEU77 |
I | HIS79 |
K | CDL202 |
P | CDL201 |
site_id | AH4 |
Number of Residues | 24 |
Details | binding site for Di-peptide CDL I 301 and ASN I 50 |
Chain | Residue |
A | TRP177 |
A | LEU181 |
B | HIS78 |
I | ASN2 |
I | HIS47 |
I | PRO48 |
I | ILE49 |
I | ARG51 |
I | MET52 |
I | PHE53 |
I | ILE54 |
I | PHE106 |
I | UQ8303 |
L | TYR109 |
L | ARG113 |
L | GLU114 |
L | CDL301 |
M | PHE89 |
M | TYR93 |
R | GLU31 |
R | LYS34 |
R | ILE35 |
R | SER38 |
R | ILE39 |
site_id | AH5 |
Number of Residues | 17 |
Details | binding site for Di-peptide PEE J 303 and LYS J 98 |
Chain | Residue |
B | CDL402 |
B | CDL405 |
J | ARG96 |
J | THR97 |
J | ALA99 |
J | ASN100 |
L | TYR128 |
L | GLY139 |
L | PRO141 |
a | ASP345 |
a | ILE346 |
a | THR347 |
a | SER349 |
a | TYR373 |
a | ILE374 |
a | PRO379 |
b | PHE149 |
Functional Information from PROSITE/UniProt
site_id | PS00213 |
Number of Residues | 12 |
Details | LIPOCALIN Lipocalin signature. NGG..RFLGFWLSM |
Chain | Residue | Details |
P | ASN42-MET53 |