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6XIR

Cryo-EM Structure of K63 Ubiquitinated Yeast Translocating Ribosome under Oxidative Stress

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
A0002181biological_processcytoplasmic translation
A0003723molecular_functionRNA binding
A0003735molecular_functionstructural constituent of ribosome
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005840cellular_componentribosome
A0006412biological_processtranslation
A0019843molecular_functionrRNA binding
A0022625cellular_componentcytosolic large ribosomal subunit
A0022626cellular_componentcytosolic ribosome
A1990904cellular_componentribonucleoprotein complex
AA0000054biological_processribosomal subunit export from nucleus
AA0002181biological_processcytoplasmic translation
AA0003723molecular_functionRNA binding
AA0003735molecular_functionstructural constituent of ribosome
AA0005515molecular_functionprotein binding
AA0005737cellular_componentcytoplasm
AA0005829cellular_componentcytosol
AA0005840cellular_componentribosome
AA0022627cellular_componentcytosolic small ribosomal subunit
AA0034198biological_processcellular response to amino acid starvation
AA0045860biological_processpositive regulation of protein kinase activity
AA1990904cellular_componentribonucleoprotein complex
AB0000028biological_processribosomal small subunit assembly
AB0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AB0003723molecular_functionRNA binding
AB0003735molecular_functionstructural constituent of ribosome
AB0005737cellular_componentcytoplasm
AB0005829cellular_componentcytosol
AB0005840cellular_componentribosome
AB0006412biological_processtranslation
AB0019843molecular_functionrRNA binding
AB0022627cellular_componentcytosolic small ribosomal subunit
AB0030686cellular_component90S preribosome
AB1990904cellular_componentribonucleoprotein complex
AD0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AD0002181biological_processcytoplasmic translation
AD0003735molecular_functionstructural constituent of ribosome
AD0005730cellular_componentnucleolus
AD0005737cellular_componentcytoplasm
AD0005829cellular_componentcytosol
AD0005840cellular_componentribosome
AD0006412biological_processtranslation
AD0022627cellular_componentcytosolic small ribosomal subunit
AD0030686cellular_component90S preribosome
AD0070181molecular_functionsmall ribosomal subunit rRNA binding
AD1990904cellular_componentribonucleoprotein complex
AE0000028biological_processribosomal small subunit assembly
AE0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AE0002181biological_processcytoplasmic translation
AE0003723molecular_functionRNA binding
AE0003735molecular_functionstructural constituent of ribosome
AE0005634cellular_componentnucleus
AE0005730cellular_componentnucleolus
AE0005737cellular_componentcytoplasm
AE0005829cellular_componentcytosol
AE0005840cellular_componentribosome
AE0006364biological_processrRNA processing
AE0006412biological_processtranslation
AE0022627cellular_componentcytosolic small ribosomal subunit
AE0030490biological_processmaturation of SSU-rRNA
AE0032040cellular_componentsmall-subunit processome
AE0042254biological_processribosome biogenesis
AE0070181molecular_functionsmall ribosomal subunit rRNA binding
AE1990904cellular_componentribonucleoprotein complex
AF0000028biological_processribosomal small subunit assembly
AF0003723molecular_functionRNA binding
AF0003735molecular_functionstructural constituent of ribosome
AF0005840cellular_componentribosome
AF0006412biological_processtranslation
AF0015935cellular_componentsmall ribosomal subunit
AF0022627cellular_componentcytosolic small ribosomal subunit
AF1990904cellular_componentribonucleoprotein complex
AG0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AG0003723molecular_functionRNA binding
AG0003735molecular_functionstructural constituent of ribosome
AG0005737cellular_componentcytoplasm
AG0005829cellular_componentcytosol
AG0005840cellular_componentribosome
AG0006412biological_processtranslation
AG0022627cellular_componentcytosolic small ribosomal subunit
AG0030686cellular_component90S preribosome
AG1990904cellular_componentribonucleoprotein complex
AH0000028biological_processribosomal small subunit assembly
AH0002181biological_processcytoplasmic translation
AH0003735molecular_functionstructural constituent of ribosome
AH0005737cellular_componentcytoplasm
AH0005829cellular_componentcytosol
AH0005840cellular_componentribosome
AH0006412biological_processtranslation
AH0022627cellular_componentcytosolic small ribosomal subunit
AH1990904cellular_componentribonucleoprotein complex
AI0000054biological_processribosomal subunit export from nucleus
AI0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AI0002181biological_processcytoplasmic translation
AI0003676molecular_functionnucleic acid binding
AI0003723molecular_functionRNA binding
AI0003735molecular_functionstructural constituent of ribosome
AI0005737cellular_componentcytoplasm
AI0005739cellular_componentmitochondrion
AI0005829cellular_componentcytosol
AI0005840cellular_componentribosome
AI0006412biological_processtranslation
AI0015935cellular_componentsmall ribosomal subunit
AI0019843molecular_functionrRNA binding
AI0022627cellular_componentcytosolic small ribosomal subunit
AI1990904cellular_componentribonucleoprotein complex
AJ0000028biological_processribosomal small subunit assembly
AJ0000054biological_processribosomal subunit export from nucleus
AJ0003723molecular_functionRNA binding
AJ0003735molecular_functionstructural constituent of ribosome
AJ0005737cellular_componentcytoplasm
AJ0005829cellular_componentcytosol
AJ0005840cellular_componentribosome
AJ0006412biological_processtranslation
AJ0022627cellular_componentcytosolic small ribosomal subunit
AJ0042254biological_processribosome biogenesis
AJ0042274biological_processribosomal small subunit biogenesis
AJ1990904cellular_componentribonucleoprotein complex
AK0003723molecular_functionRNA binding
AK0003735molecular_functionstructural constituent of ribosome
AK0005840cellular_componentribosome
AK0006412biological_processtranslation
AK0015935cellular_componentsmall ribosomal subunit
AK0022627cellular_componentcytosolic small ribosomal subunit
AK1990904cellular_componentribonucleoprotein complex
AL0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AL0000461biological_processendonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AL0003735molecular_functionstructural constituent of ribosome
AL0005737cellular_componentcytoplasm
AL0005829cellular_componentcytosol
AL0005840cellular_componentribosome
AL0006364biological_processrRNA processing
AL0006412biological_processtranslation
AL0022627cellular_componentcytosolic small ribosomal subunit
AL1990904cellular_componentribonucleoprotein complex
AM0003735molecular_functionstructural constituent of ribosome
AM0005840cellular_componentribosome
AM0006412biological_processtranslation
AM0022627cellular_componentcytosolic small ribosomal subunit
AM1990904cellular_componentribonucleoprotein complex
AN0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AN0003735molecular_functionstructural constituent of ribosome
AN0005737cellular_componentcytoplasm
AN0005829cellular_componentcytosol
AN0005840cellular_componentribosome
AN0006412biological_processtranslation
AN0006450biological_processregulation of translational fidelity
AN0015935cellular_componentsmall ribosomal subunit
AN0022627cellular_componentcytosolic small ribosomal subunit
AN1990145biological_processmaintenance of translational fidelity
AN1990904cellular_componentribonucleoprotein complex
AO0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AO0002181biological_processcytoplasmic translation
AO0003735molecular_functionstructural constituent of ribosome
AO0005737cellular_componentcytoplasm
AO0005739cellular_componentmitochondrion
AO0005829cellular_componentcytosol
AO0005840cellular_componentribosome
AO0006412biological_processtranslation
AO0022627cellular_componentcytosolic small ribosomal subunit
AO1990904cellular_componentribonucleoprotein complex
AP0003735molecular_functionstructural constituent of ribosome
AP0005840cellular_componentribosome
AP0022627cellular_componentcytosolic small ribosomal subunit
AP1990904cellular_componentribonucleoprotein complex
AQ0003729molecular_functionmRNA binding
AQ0003735molecular_functionstructural constituent of ribosome
AQ0005840cellular_componentribosome
AQ0006412biological_processtranslation
AQ0022627cellular_componentcytosolic small ribosomal subunit
AQ1990904cellular_componentribonucleoprotein complex
AR0000028biological_processribosomal small subunit assembly
AR0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AR0003723molecular_functionRNA binding
AR0003735molecular_functionstructural constituent of ribosome
AR0005737cellular_componentcytoplasm
AR0005829cellular_componentcytosol
AR0005840cellular_componentribosome
AR0006412biological_processtranslation
AR0008270molecular_functionzinc ion binding
AR0022627cellular_componentcytosolic small ribosomal subunit
AR0044391cellular_componentribosomal subunit
AR0046872molecular_functionmetal ion binding
AR1990904cellular_componentribonucleoprotein complex
AS0000028biological_processribosomal small subunit assembly
AS0003735molecular_functionstructural constituent of ribosome
AS0005840cellular_componentribosome
AS0006412biological_processtranslation
AS0022627cellular_componentcytosolic small ribosomal subunit
AS0030490biological_processmaturation of SSU-rRNA
AS1990904cellular_componentribonucleoprotein complex
AT0003735molecular_functionstructural constituent of ribosome
AT0005840cellular_componentribosome
AT0006412biological_processtranslation
AT0008270molecular_functionzinc ion binding
AT0022627cellular_componentcytosolic small ribosomal subunit
AT0046872molecular_functionmetal ion binding
AT1990904cellular_componentribonucleoprotein complex
AV0001934biological_processpositive regulation of protein phosphorylation
AV0001965molecular_functionG-protein alpha-subunit binding
AV0002181biological_processcytoplasmic translation
AV0005080molecular_functionprotein kinase C binding
AV0005092molecular_functionGDP-dissociation inhibitor activity
AV0005634cellular_componentnucleus
AV0005737cellular_componentcytoplasm
AV0005829cellular_componentcytosol
AV0005840cellular_componentribosome
AV0007186biological_processG protein-coupled receptor signaling pathway
AV0010629biological_processnegative regulation of gene expression
AV0017148biological_processnegative regulation of translation
AV0022627cellular_componentcytosolic small ribosomal subunit
AV0043022molecular_functionribosome binding
AV0045182molecular_functiontranslation regulator activity
AV0061157biological_processmRNA destabilization
AV0072344biological_processrescue of stalled ribosome
AV1902660biological_processnegative regulation of glucose mediated signaling pathway
AV1990116biological_processribosome-associated ubiquitin-dependent protein catabolic process
AV1990904cellular_componentribonucleoprotein complex
AV2001125biological_processnegative regulation of translational frameshifting
B0003723molecular_functionRNA binding
B0003735molecular_functionstructural constituent of ribosome
B0005840cellular_componentribosome
B0006412biological_processtranslation
B0022625cellular_componentcytosolic large ribosomal subunit
B0046872molecular_functionmetal ion binding
B1990904cellular_componentribonucleoprotein complex
C0003723molecular_functionRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0022625cellular_componentcytosolic large ribosomal subunit
C1990904cellular_componentribonucleoprotein complex
D0003735molecular_functionstructural constituent of ribosome
D0005737cellular_componentcytoplasm
D0005840cellular_componentribosome
D0006412biological_processtranslation
D0008097molecular_function5S rRNA binding
D0022625cellular_componentcytosolic large ribosomal subunit
D0046872molecular_functionmetal ion binding
D1990904cellular_componentribonucleoprotein complex
E0000027biological_processribosomal large subunit assembly
E0002181biological_processcytoplasmic translation
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0005840cellular_componentribosome
E0006412biological_processtranslation
E0022625cellular_componentcytosolic large ribosomal subunit
E1990904cellular_componentribonucleoprotein complex
F0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
F0000470biological_processmaturation of LSU-rRNA
F0002181biological_processcytoplasmic translation
F0003723molecular_functionRNA binding
F0003735molecular_functionstructural constituent of ribosome
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0005840cellular_componentribosome
F0022625cellular_componentcytosolic large ribosomal subunit
F0042273biological_processribosomal large subunit biogenesis
F1990904cellular_componentribonucleoprotein complex
G0042254biological_processribosome biogenesis
G1990904cellular_componentribonucleoprotein complex
H0003735molecular_functionstructural constituent of ribosome
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0019843molecular_functionrRNA binding
I0003735molecular_functionstructural constituent of ribosome
I0005840cellular_componentribosome
I0006412biological_processtranslation
I0022625cellular_componentcytosolic large ribosomal subunit
I0046872molecular_functionmetal ion binding
I1990904cellular_componentribonucleoprotein complex
J0003723molecular_functionRNA binding
J0003735molecular_functionstructural constituent of ribosome
J0005840cellular_componentribosome
J0006412biological_processtranslation
J0022625cellular_componentcytosolic large ribosomal subunit
J1990904cellular_componentribonucleoprotein complex
L0002181biological_processcytoplasmic translation
L0003723molecular_functionRNA binding
L0003735molecular_functionstructural constituent of ribosome
L0005737cellular_componentcytoplasm
L0005829cellular_componentcytosol
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0022625cellular_componentcytosolic large ribosomal subunit
L1990904cellular_componentribonucleoprotein complex
M0002181biological_processcytoplasmic translation
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005737cellular_componentcytoplasm
M0005829cellular_componentcytosol
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0016236biological_processmacroautophagy
M0022625cellular_componentcytosolic large ribosomal subunit
M0032991cellular_componentprotein-containing complex
M0042273biological_processribosomal large subunit biogenesis
M0043229cellular_componentintracellular organelle
M1990904cellular_componentribonucleoprotein complex
N0002181biological_processcytoplasmic translation
N0003723molecular_functionRNA binding
N0003735molecular_functionstructural constituent of ribosome
N0005737cellular_componentcytoplasm
N0005829cellular_componentcytosol
N0005840cellular_componentribosome
N0006412biological_processtranslation
N0022625cellular_componentcytosolic large ribosomal subunit
N0022626cellular_componentcytosolic ribosome
N1990904cellular_componentribonucleoprotein complex
O0002181biological_processcytoplasmic translation
O0003723molecular_functionRNA binding
O0003729molecular_functionmRNA binding
O0003735molecular_functionstructural constituent of ribosome
O0005737cellular_componentcytoplasm
O0005829cellular_componentcytosol
O0005840cellular_componentribosome
O0006412biological_processtranslation
O0015934cellular_componentlarge ribosomal subunit
O0017148biological_processnegative regulation of translation
O0022625cellular_componentcytosolic large ribosomal subunit
O1990904cellular_componentribonucleoprotein complex
P0000448biological_processcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
P0002181biological_processcytoplasmic translation
P0003735molecular_functionstructural constituent of ribosome
P0005737cellular_componentcytoplasm
P0005829cellular_componentcytosol
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0015934cellular_componentlarge ribosomal subunit
P0022625cellular_componentcytosolic large ribosomal subunit
P0030687cellular_componentpreribosome, large subunit precursor
P1990904cellular_componentribonucleoprotein complex
Q0002181biological_processcytoplasmic translation
Q0003723molecular_functionRNA binding
Q0003735molecular_functionstructural constituent of ribosome
Q0005737cellular_componentcytoplasm
Q0005829cellular_componentcytosol
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0022625cellular_componentcytosolic large ribosomal subunit
Q0043232cellular_componentintracellular non-membrane-bounded organelle
Q1990904cellular_componentribonucleoprotein complex
R0002181biological_processcytoplasmic translation
R0003723molecular_functionRNA binding
R0003735molecular_functionstructural constituent of ribosome
R0005737cellular_componentcytoplasm
R0005829cellular_componentcytosol
R0005840cellular_componentribosome
R0006412biological_processtranslation
R0022625cellular_componentcytosolic large ribosomal subunit
R1990904cellular_componentribonucleoprotein complex
S0002181biological_processcytoplasmic translation
S0003735molecular_functionstructural constituent of ribosome
S0005737cellular_componentcytoplasm
S0005829cellular_componentcytosol
S0005840cellular_componentribosome
S0006412biological_processtranslation
S0022625cellular_componentcytosolic large ribosomal subunit
S1990904cellular_componentribonucleoprotein complex
T0002181biological_processcytoplasmic translation
T0003735molecular_functionstructural constituent of ribosome
T0005737cellular_componentcytoplasm
T0005829cellular_componentcytosol
T0005840cellular_componentribosome
T0006412biological_processtranslation
T0022625cellular_componentcytosolic large ribosomal subunit
T1990904cellular_componentribonucleoprotein complex
U0002181biological_processcytoplasmic translation
U0003723molecular_functionRNA binding
U0003735molecular_functionstructural constituent of ribosome
U0005737cellular_componentcytoplasm
U0005829cellular_componentcytosol
U0005840cellular_componentribosome
U0006412biological_processtranslation
U0022625cellular_componentcytosolic large ribosomal subunit
U1990904cellular_componentribonucleoprotein complex
V0002181biological_processcytoplasmic translation
V0003735molecular_functionstructural constituent of ribosome
V0005737cellular_componentcytoplasm
V0005829cellular_componentcytosol
V0005840cellular_componentribosome
V0006412biological_processtranslation
V0022625cellular_componentcytosolic large ribosomal subunit
V0070180molecular_functionlarge ribosomal subunit rRNA binding
V1990904cellular_componentribonucleoprotein complex
W0002181biological_processcytoplasmic translation
W0003729molecular_functionmRNA binding
W0003735molecular_functionstructural constituent of ribosome
W0022625cellular_componentcytosolic large ribosomal subunit
X0000027biological_processribosomal large subunit assembly
X0002181biological_processcytoplasmic translation
X0003723molecular_functionRNA binding
X0003735molecular_functionstructural constituent of ribosome
X0005515molecular_functionprotein binding
X0005737cellular_componentcytoplasm
X0005829cellular_componentcytosol
X0005840cellular_componentribosome
X0006412biological_processtranslation
X0019843molecular_functionrRNA binding
X0022625cellular_componentcytosolic large ribosomal subunit
X0030687cellular_componentpreribosome, large subunit precursor
X1990904cellular_componentribonucleoprotein complex
Y0002181biological_processcytoplasmic translation
Y0003723molecular_functionRNA binding
Y0003735molecular_functionstructural constituent of ribosome
Y0005737cellular_componentcytoplasm
Y0005829cellular_componentcytosol
Y0005840cellular_componentribosome
Y0006412biological_processtranslation
Y0015934cellular_componentlarge ribosomal subunit
Y0022625cellular_componentcytosolic large ribosomal subunit
Y0042273biological_processribosomal large subunit biogenesis
Y1990904cellular_componentribonucleoprotein complex
Z0002181biological_processcytoplasmic translation
Z0003735molecular_functionstructural constituent of ribosome
Z0005737cellular_componentcytoplasm
Z0005829cellular_componentcytosol
Z0005840cellular_componentribosome
Z0006412biological_processtranslation
Z0022625cellular_componentcytosolic large ribosomal subunit
Z1990904cellular_componentribonucleoprotein complex
a0002181biological_processcytoplasmic translation
a0003723molecular_functionRNA binding
a0003735molecular_functionstructural constituent of ribosome
a0005634cellular_componentnucleus
a0005737cellular_componentcytoplasm
a0005829cellular_componentcytosol
a0005840cellular_componentribosome
a0006412biological_processtranslation
a0015934cellular_componentlarge ribosomal subunit
a0022625cellular_componentcytosolic large ribosomal subunit
a0043232cellular_componentintracellular non-membrane-bounded organelle
a1990904cellular_componentribonucleoprotein complex
b0002181biological_processcytoplasmic translation
b0003735molecular_functionstructural constituent of ribosome
b0005840cellular_componentribosome
b0006412biological_processtranslation
b0022625cellular_componentcytosolic large ribosomal subunit
b1990904cellular_componentribonucleoprotein complex
c0002181biological_processcytoplasmic translation
c0003723molecular_functionRNA binding
c0003735molecular_functionstructural constituent of ribosome
c0005737cellular_componentcytoplasm
c0005829cellular_componentcytosol
c0005840cellular_componentribosome
c0006364biological_processrRNA processing
c0022625cellular_componentcytosolic large ribosomal subunit
c0030627molecular_functionpre-mRNA 5'-splice site binding
c0048025biological_processnegative regulation of mRNA splicing, via spliceosome
c1990904cellular_componentribonucleoprotein complex
d0002181biological_processcytoplasmic translation
d0003735molecular_functionstructural constituent of ribosome
d0005737cellular_componentcytoplasm
d0005829cellular_componentcytosol
d0005840cellular_componentribosome
d0006412biological_processtranslation
d0006450biological_processregulation of translational fidelity
d0022625cellular_componentcytosolic large ribosomal subunit
d1990904cellular_componentribonucleoprotein complex
e0003735molecular_functionstructural constituent of ribosome
e0005840cellular_componentribosome
e0006412biological_processtranslation
e0022625cellular_componentcytosolic large ribosomal subunit
e1990904cellular_componentribonucleoprotein complex
f0002181biological_processcytoplasmic translation
f0003735molecular_functionstructural constituent of ribosome
f0005737cellular_componentcytoplasm
f0005829cellular_componentcytosol
f0005840cellular_componentribosome
f0006412biological_processtranslation
f0022625cellular_componentcytosolic large ribosomal subunit
f0042273biological_processribosomal large subunit biogenesis
f1990904cellular_componentribonucleoprotein complex
g0002181biological_processcytoplasmic translation
g0003735molecular_functionstructural constituent of ribosome
g0005737cellular_componentcytoplasm
g0005829cellular_componentcytosol
g0005840cellular_componentribosome
g0006412biological_processtranslation
g0022625cellular_componentcytosolic large ribosomal subunit
g0030687cellular_componentpreribosome, large subunit precursor
g0042254biological_processribosome biogenesis
g1990904cellular_componentribonucleoprotein complex
h0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
h0002181biological_processcytoplasmic translation
h0003729molecular_functionmRNA binding
h0003735molecular_functionstructural constituent of ribosome
h0005737cellular_componentcytoplasm
h0005829cellular_componentcytosol
h0005840cellular_componentribosome
h0006412biological_processtranslation
h0022625cellular_componentcytosolic large ribosomal subunit
h0030687cellular_componentpreribosome, large subunit precursor
h1990904cellular_componentribonucleoprotein complex
i0002181biological_processcytoplasmic translation
i0003723molecular_functionRNA binding
i0003735molecular_functionstructural constituent of ribosome
i0005737cellular_componentcytoplasm
i0005829cellular_componentcytosol
i0005840cellular_componentribosome
i0006412biological_processtranslation
i0022625cellular_componentcytosolic large ribosomal subunit
i1990904cellular_componentribonucleoprotein complex
j0000448biological_processcleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
j0002181biological_processcytoplasmic translation
j0003723molecular_functionRNA binding
j0003735molecular_functionstructural constituent of ribosome
j0005737cellular_componentcytoplasm
j0005829cellular_componentcytosol
j0005840cellular_componentribosome
j0006412biological_processtranslation
j0008270molecular_functionzinc ion binding
j0019843molecular_functionrRNA binding
j0022625cellular_componentcytosolic large ribosomal subunit
j0030687cellular_componentpreribosome, large subunit precursor
j0044391cellular_componentribosomal subunit
j0046872molecular_functionmetal ion binding
j1990904cellular_componentribonucleoprotein complex
k0003735molecular_functionstructural constituent of ribosome
k0005840cellular_componentribosome
k0006412biological_processtranslation
k0022618biological_processprotein-RNA complex assembly
k0022625cellular_componentcytosolic large ribosomal subunit
k1990904cellular_componentribonucleoprotein complex
l0002181biological_processcytoplasmic translation
l0003735molecular_functionstructural constituent of ribosome
l0005515molecular_functionprotein binding
l0005737cellular_componentcytoplasm
l0005829cellular_componentcytosol
l0005840cellular_componentribosome
l0006412biological_processtranslation
l0022625cellular_componentcytosolic large ribosomal subunit
l1990904cellular_componentribonucleoprotein complex
n0003735molecular_functionstructural constituent of ribosome
n0005840cellular_componentribosome
n0006412biological_processtranslation
o0002181biological_processcytoplasmic translation
o0003735molecular_functionstructural constituent of ribosome
o0005737cellular_componentcytoplasm
o0005829cellular_componentcytosol
o0005840cellular_componentribosome
o0006412biological_processtranslation
o0008270molecular_functionzinc ion binding
o0022625cellular_componentcytosolic large ribosomal subunit
o0044391cellular_componentribosomal subunit
o0046677biological_processresponse to antibiotic
o0046898biological_processresponse to cycloheximide
o1990904cellular_componentribonucleoprotein complex
p0002181biological_processcytoplasmic translation
p0003735molecular_functionstructural constituent of ribosome
p0005737cellular_componentcytoplasm
p0005829cellular_componentcytosol
p0005840cellular_componentribosome
p0006412biological_processtranslation
p0022625cellular_componentcytosolic large ribosomal subunit
p0044391cellular_componentribosomal subunit
p0046872molecular_functionmetal ion binding
p0070180molecular_functionlarge ribosomal subunit rRNA binding
p1990904cellular_componentribonucleoprotein complex
q0000028biological_processribosomal small subunit assembly
q0000054biological_processribosomal subunit export from nucleus
q0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
q0000461biological_processendonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
q0002181biological_processcytoplasmic translation
q0003735molecular_functionstructural constituent of ribosome
q0005737cellular_componentcytoplasm
q0005829cellular_componentcytosol
q0005840cellular_componentribosome
q0006364biological_processrRNA processing
q0006412biological_processtranslation
q0010494cellular_componentcytoplasmic stress granule
q0015935cellular_componentsmall ribosomal subunit
q0022627cellular_componentcytosolic small ribosomal subunit
q0030686cellular_component90S preribosome
q0042254biological_processribosome biogenesis
q1990904cellular_componentribonucleoprotein complex
r0003735molecular_functionstructural constituent of ribosome
r0005737cellular_componentcytoplasm
r0005829cellular_componentcytosol
r0005840cellular_componentribosome
r0006412biological_processtranslation
r0022627cellular_componentcytosolic small ribosomal subunit
r0046872molecular_functionmetal ion binding
r1990904cellular_componentribonucleoprotein complex
s0003723molecular_functionRNA binding
s0003735molecular_functionstructural constituent of ribosome
s0005840cellular_componentribosome
s0006412biological_processtranslation
s0015935cellular_componentsmall ribosomal subunit
s0022627cellular_componentcytosolic small ribosomal subunit
s1990904cellular_componentribonucleoprotein complex
t0003723molecular_functionRNA binding
t0003735molecular_functionstructural constituent of ribosome
t0005634cellular_componentnucleus
t0005840cellular_componentribosome
t0006412biological_processtranslation
t0015935cellular_componentsmall ribosomal subunit
t0022626cellular_componentcytosolic ribosome
t0022627cellular_componentcytosolic small ribosomal subunit
t1990904cellular_componentribonucleoprotein complex
t2001235biological_processpositive regulation of apoptotic signaling pathway
u0002181biological_processcytoplasmic translation
u0003723molecular_functionRNA binding
u0003735molecular_functionstructural constituent of ribosome
u0005737cellular_componentcytoplasm
u0005829cellular_componentcytosol
u0005840cellular_componentribosome
u0006412biological_processtranslation
u0019843molecular_functionrRNA binding
u0022627cellular_componentcytosolic small ribosomal subunit
u0030686cellular_component90S preribosome
u0032991cellular_componentprotein-containing complex
u0043229cellular_componentintracellular organelle
u1990904cellular_componentribonucleoprotein complex
v0000028biological_processribosomal small subunit assembly
v0003723molecular_functionRNA binding
v0003729molecular_functionmRNA binding
v0003735molecular_functionstructural constituent of ribosome
v0005840cellular_componentribosome
v0006412biological_processtranslation
v0015935cellular_componentsmall ribosomal subunit
v0019843molecular_functionrRNA binding
v0022627cellular_componentcytosolic small ribosomal subunit
v1990904cellular_componentribonucleoprotein complex
w0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
w0003735molecular_functionstructural constituent of ribosome
w0005634cellular_componentnucleus
w0005654cellular_componentnucleoplasm
w0005730cellular_componentnucleolus
w0005737cellular_componentcytoplasm
w0005829cellular_componentcytosol
w0005840cellular_componentribosome
w0006364biological_processrRNA processing
w0006412biological_processtranslation
w0022627cellular_componentcytosolic small ribosomal subunit
w0030686cellular_component90S preribosome
w0032040cellular_componentsmall-subunit processome
w0042254biological_processribosome biogenesis
w1990904cellular_componentribonucleoprotein complex
x0002181biological_processcytoplasmic translation
x0003735molecular_functionstructural constituent of ribosome
x0005634cellular_componentnucleus
x0005654cellular_componentnucleoplasm
x0005730cellular_componentnucleolus
x0005737cellular_componentcytoplasm
x0005829cellular_componentcytosol
x0005840cellular_componentribosome
x0006364biological_processrRNA processing
x0006412biological_processtranslation
x0022627cellular_componentcytosolic small ribosomal subunit
x0030686cellular_component90S preribosome
x0032040cellular_componentsmall-subunit processome
x0042254biological_processribosome biogenesis
x0042274biological_processribosomal small subunit biogenesis
x1990904cellular_componentribonucleoprotein complex
y0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
y0003735molecular_functionstructural constituent of ribosome
y0005840cellular_componentribosome
y0006412biological_processtranslation
y0022627cellular_componentcytosolic small ribosomal subunit
y1990904cellular_componentribonucleoprotein complex
z0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
z0003723molecular_functionRNA binding
z0003735molecular_functionstructural constituent of ribosome
z0005634cellular_componentnucleus
z0005654cellular_componentnucleoplasm
z0005730cellular_componentnucleolus
z0005737cellular_componentcytoplasm
z0005829cellular_componentcytosol
z0005840cellular_componentribosome
z0006364biological_processrRNA processing
z0006412biological_processtranslation
z0015935cellular_componentsmall ribosomal subunit
z0019843molecular_functionrRNA binding
z0022627cellular_componentcytosolic small ribosomal subunit
z0030686cellular_component90S preribosome
z0032040cellular_componentsmall-subunit processome
z0042254biological_processribosome biogenesis
z0042274biological_processribosomal small subunit biogenesis
z0043226cellular_componentorganelle
z1990904cellular_componentribonucleoprotein complex
Functional Information from PROSITE/UniProt
site_idPS00051
Number of Residues17
DetailsRIBOSOMAL_L39E Ribosomal protein L39e signature. RTnntIryNakrRNWRR
ChainResidueDetails
lARG30-ARG46

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FeqnemiDaiAvTkGHGfeGvthR
ChainResidueDetails
BPHE209-ARG232

site_idPS00050
Number of Residues16
DetailsRIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVRLTadydaldI
ChainResidueDetails
XLYS120-ILE135

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVtVgQcRPIS
ChainResidueDetails
ABGLY120-SER132

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GyvILTTSaGIMdheeAR
ChainResidueDetails
AMGLY100-ARG117

site_idPS00358
Number of Residues17
DetailsRIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLSGQtpVqSkARyT
ChainResidueDetails
JLEU37-THR53

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. AeqhNLvkkGPVrLPT
ChainResidueDetails
AKALA45-THR60

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GLrIgrieDvTPvPSD
ChainResidueDetails
AELEU102-ASP124

site_idPS01106
Number of Residues18
DetailsRIBOSOMAL_L18E Ribosomal protein L18e signature. KaLflSKinRPpVSVsRI
ChainResidueDetails
QLYS50-ILE67

site_idPS01194
Number of Residues24
DetailsRIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGFVIYRvRVrRG
ChainResidueDetails
NASP46-GLY69

site_idPS00700
Number of Residues22
DetailsRIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QicrVrnKdiRkFlDGIYVshK
ChainResidueDetails
HGLN163-LYS184

site_idPS01104
Number of Residues15
DetailsRIBOSOMAL_L13E Ribosomal protein L13e signature. RaGRGFTLaEVkaaG
ChainResidueDetails
LARG70-GLY84

site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CkkmgVPYaiVkGKarLG
ChainResidueDetails
GCYS170-GLY187

site_idPS00526
Number of Residues20
DetailsRIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaAsvvgVGkrkVWLDP
ChainResidueDetails
RGLN7-PRO26

site_idPS00634
Number of Residues33
DetailsRIBOSOMAL_L30 Ribosomal protein L30 signature. VLqlLrLtRinSgTfvkvtkatleLLklIepYV
ChainResidueDetails
FVAL102-VAL134

site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AIVVrqakswrrr.DGvflyFedNagVI
ChainResidueDetails
VALA76-ILE102

site_idPS01145
Number of Residues14
DetailsRIBOSOMAL_L34E Ribosomal protein L34e signature. TrSnKikvvKTPGG
ChainResidueDetails
gTHR15-GLY28

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLernRkDkdAkfrLilIesrihrLarY
ChainResidueDetails
ADVAL98-TYR128

site_idPS00783
Number of Residues24
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. LRGMVShktarGKaalerLkVFeG
ChainResidueDetails
OLEU84-GLY107

site_idPS00961
Number of Residues9
DetailsRIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL
ChainResidueDetails
ASGLU58-LEU66

site_idPS01077
Number of Residues20
DetailsRIBOSOMAL_L37E Ribosomal protein L37e signature. GTpSfGkRhnks.HtlCnRCG
ChainResidueDetails
jGLY4-GLY23

site_idPS01190
Number of Residues11
DetailsRIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRlIDLIR
ChainResidueDetails
iPRO52-ARG62

site_idPS00529
Number of Residues23
DetailsRIBOSOMAL_S24E Ribosomal protein S24e signature. FGggKSvGFGlVYNSvaeakkfE
ChainResidueDetails
AOPHE64-GLU86

site_idPS01257
Number of Residues22
DetailsRIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqqGMRgAWGKPhGlaARV
ChainResidueDetails
IALA108-VAL129

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. ALSAswDkTLRLWDV
ChainResidueDetails
AVALA80-VAL94
AVILE169-LEU183
AVILE211-LEU225

site_idPS00712
Number of Residues16
DetailsRIBOSOMAL_S17E Ribosomal protein S17e signature. IqSKrLRNkIAGYtTH
ChainResidueDetails
AHILE41-HIS56

site_idPS00464
Number of Residues25
DetailsRIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinkyesspSHIELvV
ChainResidueDetails
PARG126-VAL150

site_idPS01168
Number of Residues33
DetailsRIBOSOMAL_S27E Ribosomal protein S27e signature. KCpgClnittvFShAqtavtCesCStiLctPtG
ChainResidueDetails
ARLYS36-GLY68

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhvSQvyAirqAiAKGL
ChainResidueDetails
AGGLY71-LEU89

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR
ChainResidueDetails
ANLYS62-ARG69

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. RvCsshtglirkyg.LNICRqCFR
ChainResidueDetails
ATARG22-ARG44

site_idPS00709
Number of Residues25
DetailsRIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkytlGyKstVKslRqGksKlIII
ChainResidueDetails
cSER20-ILE44

site_idPS00993
Number of Residues21
DetailsRIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGTavGKlfrvgvVsIlEaG
ChainResidueDetails
cGLU76-GLY96

site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. SLPKIKtVRKSIACV
ChainResidueDetails
hSER40-VAL54

site_idPS00578
Number of Residues12
DetailsRIBOSOMAL_S6E Ribosomal protein S6e signature. ISGGnDkqGfPM
ChainResidueDetails
wILE52-MET63

site_idPS00733
Number of Residues8
DetailsRIBOSOMAL_S26E Ribosomal protein S26e signature. YCVSCAIH
ChainResidueDetails
AQTYR73-HIS80

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtqVYKlglAkSvhhARvLI
ChainResidueDetails
zLEU105-ILE129

site_idPS00475
Number of Residues32
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KILGkGrIpnvp.ViVkarfVSklAeekIraaG
ChainResidueDetails
aLYS111-GLY142

site_idPS00548
Number of Residues37
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. AKamkfadGfLihSgqpVndfIDtatrhvlMrqGvlG
ChainResidueDetails
tALA147-GLY183

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. AqLLLAANTHLG
ChainResidueDetails
qALA14-GLY25

site_idPS00963
Number of Residues25
DetailsRIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlVIVtDprsDaqaIkEasyvNIP
ChainResidueDetails
qPRO118-PRO142

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAvvVVGDsn.GhVGlGiktak.EVag.AI
ChainResidueDetails
sGLY93-ILE125

site_idPS00996
Number of Residues9
DetailsRIBOSOMAL_S21E Ribosomal protein S21e signature. LYVPRKCSA
ChainResidueDetails
ALLEU11-ALA19

site_idPS01073
Number of Residues18
DetailsRIBOSOMAL_L24E Ribosomal protein L24e signature. FsGakIyPGrGtlFvRgD
ChainResidueDetails
WPHE8-ASP25

site_idPS00528
Number of Residues15
DetailsRIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLAaPhhWlLdK
ChainResidueDetails
uHIS8-LYS22

site_idPS00580
Number of Residues21
DetailsRIBOSOMAL_L32E Ribosomal protein L32e signature. FkRhhsdRyhRVaen..WRKqkG
ChainResidueDetails
ePHE17-GLY37

site_idPS01107
Number of Residues12
DetailsRIBOSOMAL_L27E Ribosomal protein L27e signature. GKNqWFFskLRF
ChainResidueDetails
ZGLY125-PHE136

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKafnqveIrpemLGhyLGEFsiT
ChainResidueDetails
AFASN98-THR122

site_idPS01170
Number of Residues19
DetailsRIBOSOMAL_L6E Ribosomal protein L6e signature. NgvPLRRvnarYVIATSt.K
ChainResidueDetails
EASN72-LYS90

site_idPS01193
Number of Residues20
DetailsRIBOSOMAL_S8E Ribosomal protein S8e signature. RsaTGAkraqf.RkKrKfELG
ChainResidueDetails
yARG11-GLY30

site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PktRGVAmNPvD
ChainResidueDetails
APRO197-ASP208

site_idPS01172
Number of Residues12
DetailsRIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKvvLRleC
ChainResidueDetails
oLYS63-CYS74

site_idPS01105
Number of Residues22
DetailsRIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKVtRtHGnsGvVrAtFrnnLP
ChainResidueDetails
fGLY69-PRO90

site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVlVVrGskKGqe.GkI
ChainResidueDetails
YASP53-ILE70

site_idPS00948
Number of Residues14
DetailsRIBOSOMAL_S7E Ribosomal protein S7e signature. KLtRELEKKFQdRH
ChainResidueDetails
xLYS76-HIS89

site_idPS01144
Number of Residues15
DetailsRIBOSOMAL_L31E Ribosomal protein L31e signature. VRLApeLNqAiWkRG
ChainResidueDetails
dVAL49-GLY63

site_idPS00628
Number of Residues20
DetailsRIBOSOMAL_S19E Ribosomal protein S19e signature. PykhidaSgsInRkVLQaLE
ChainResidueDetails
AJPRO90-GLU109

site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsLMmngrnnGKKlkavrIIkhT
ChainResidueDetails
vGLU91-THR117

site_idPS01191
Number of Residues13
DetailsRIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkGRVvEvCLaDL
ChainResidueDetails
rLEU61-LEU73

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGiRHfwGlrVRGQ
ChainResidueDetails
AIARG123-GLN136

site_idPS01171
Number of Residues26
DetailsRIBOSOMAL_L21E Ribosomal protein L21e signature. GDiVdikangsiqk.GmpHkfYqGkTG
ChainResidueDetails
TGLY37-GLY62

site_idPS00939
Number of Residues27
DetailsRIBOSOMAL_L1E Ribosomal protein L1e signature. NhneKryATaSAIaATAvaslvlaRGH
ChainResidueDetails
CASN114-HIS140

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: N-acetylalanine => ECO:0000269|Ref.3, ECO:0007744|PubMed:22814378
ChainResidueDetails
AVALA2
hSER50
cLYS53
cLYS83

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:17287358
ChainResidueDetails
AVTHR96
ABLYS141
ABLYS148
xLYS84
ADLYS43
wLYS149
wLYS214
ABLYS79
ABLYS96
ABLYS105
ABLYS133

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:19779198
ChainResidueDetails
AVTHR168
AGSER76
AILYS49
AILYS80
AILYS96

site_idSWS_FT_FI4
Number of Residues6
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
ChainResidueDetails
AVLYS46
AVLYS53
AVLYS107
AVLYS137
AVLYS161
uLYS179
uLYS211
uLYS233

site_idSWS_FT_FI5
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0007744|PubMed:22106047
ChainResidueDetails
AGLYS30
AGLYS47
AGLYS59

218853

PDB entries from 2024-04-24

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