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6WOC

Diphosphoinositol polyphosphate phosphohydrolase 1 (DIPP1/NUDT3) in complex with 5-diphosphoinositol pentakisphosphate and Mg, presoaked with 5-IP7, Mg and Fluoride, soaking 1min in the absence of Fluoride.

Functional Information from GO Data
ChainGOidnamespacecontents
A0016462molecular_functionpyrophosphatase activity
A0016787molecular_functionhydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues29
Detailsbinding site for residue I7P A 401
ChainResidue
AARG10
AGLY52
AGLU66
AGLU70
AARG89
AHIS91
AARG115
ALYS133
AMG402
AMG403
AMG404
ALYS18
AHOH501
AHOH502
AHOH503
AHOH513
AHOH523
AHOH546
AHOH548
AHOH558
AHOH562
AHOH614
AARG20
ASER39
ASER40
AARG41
AILE47
AGLY50
AGLY51

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 402
ChainResidue
AGLY50
AGLU70
AI7P401
AMG403
AHOH523

site_idAC3
Number of Residues8
Detailsbinding site for residue MG A 403
ChainResidue
AGLU66
AGLU70
AI7P401
AMG402
AMG404
AHOH509
AHOH614
AHOH625

site_idAC4
Number of Residues7
Detailsbinding site for residue MG A 404
ChainResidue
AGLU66
AI7P401
AMG403
AHOH548
AHOH550
AHOH625
AHOH631

site_idAC5
Number of Residues3
Detailsbinding site for residue CL A 405
ChainResidue
AASN86
AHIS91
AHOH621

site_idAC6
Number of Residues7
Detailsbinding site for residue CL A 406
ChainResidue
AARG27
ASER28
ASER30
AGLU31
AGLU32
AGLU33
AHOH642

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GgmepeEepsvAAvREVcEEaG
ChainResidueDetails
AGLY51-GLY72

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton acceptor => ECO:0000305
ChainResidueDetails
AGLU69

site_idSWS_FT_FI2
Number of Residues5
DetailsBINDING: BINDING => ECO:0000269|PubMed:19585659, ECO:0007744|PDB:2FVV, ECO:0007744|PDB:2Q9P
ChainResidueDetails
ALYS18
ASER39
AARG89
ALYS133
AARG10

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:19585659, ECO:0007744|PDB:2Q9P
ChainResidueDetails
AGLU66
AGLU70
AARG115
AGLY50

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N-acetylmethionine => ECO:0007744|PubMed:22814378
ChainResidueDetails
AMET1

220472

PDB entries from 2024-05-29

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