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6UV4

Crystal structure of the core domain of RNA helicase DDX17 with RNA pri-18a-oligo1

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues23
Detailsbinding site for residue ADP A 501
ChainResidue
APHE94
ALYS142
ATHR143
AASP404
AARG432
ASER433
ABEF502
AMG503
AHOH655
AHOH710
AHOH744
APHE112
AHOH749
AHOH750
AHOH833
AHOH840
AGLU114
ATHR116
AGLN119
AGLN137
AGLY139
ASER140
AGLY141

site_idAC2
Number of Residues13
Detailsbinding site for residue BEF A 502
ChainResidue
ATHR138
AGLY139
ALYS142
AGLU247
AGLY402
AARG429
AARG432
AADP501
AMG503
AHOH695
AHOH728
AHOH744
AHOH822

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 503
ChainResidue
AADP501
ABEF502
AHOH655
AHOH695
AHOH728
AHOH744

Functional Information from PROSITE/UniProt
site_idPS00039
Number of Residues9
DetailsDEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. VLDEADRmL
ChainResidueDetails
AVAL244-LEU252

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00541
ChainResidueDetails
AALA136

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: N6-acetyllysine; by EP300 => ECO:0000269|PubMed:20663877
ChainResidueDetails
ALYS42

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:16964243
ChainResidueDetails
ATHR444

site_idSWS_FT_FI4
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS50

site_idSWS_FT_FI5
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS449

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PDB entries from 2024-06-12

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