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6UV1

Crystal structure of RNA helicase DDX17 in complex of rU10 RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
B0003676molecular_functionnucleic acid binding
B0003724molecular_functionRNA helicase activity
B0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues23
Detailsbinding site for residue ADP A 501
ChainResidue
APHE94
ATHR143
AASP404
AARG432
ABEF502
AMG503
AMG504
AHOH629
AHOH632
AHOH681
AHOH692
APHE112
AHOH694
AHOH714
AHOH719
AHOH784
AGLU114
APRO115
AGLN119
AGLY139
ASER140
AGLY141
ALYS142

site_idAC2
Number of Residues11
Detailsbinding site for residue BEF A 502
ChainResidue
ATHR138
AGLY139
ALYS142
AGLU247
AGLY402
AARG429
AARG432
AADP501
AMG503
AHOH746
AHOH752

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 503
ChainResidue
AGLU247
AADP501
ABEF502
AHOH614
AHOH681
AHOH694
AHOH746

site_idAC4
Number of Residues4
Detailsbinding site for residue MG A 504
ChainResidue
AADP501
AHOH692
AHOH719
AHOH792

site_idAC5
Number of Residues2
Detailsbinding site for residue MG A 505
ChainResidue
APRO100
AASN155

site_idAC6
Number of Residues2
Detailsbinding site for residue MG A 506
ChainResidue
AMET319
AGLU320

site_idAC7
Number of Residues22
Detailsbinding site for residue ADP B 501
ChainResidue
BPHE94
BPHE112
BGLU114
BGLN119
BGLY139
BSER140
BGLY141
BLYS142
BTHR143
BASP404
BARG432
BSER433
BBEF502
BMG503
BHOH658
BHOH663
BHOH674
BHOH679
BHOH688
BHOH709
BHOH714
BHOH744

site_idAC8
Number of Residues12
Detailsbinding site for residue BEF B 502
ChainResidue
BTHR138
BGLY139
BLYS142
BGLU247
BGLY402
BARG429
BARG432
BADP501
BMG503
BHOH679
BHOH702
BHOH744

site_idAC9
Number of Residues6
Detailsbinding site for residue MG B 503
ChainResidue
BADP501
BBEF502
BHOH658
BHOH667
BHOH679
BHOH744

site_idAD1
Number of Residues1
Detailsbinding site for residue MG B 504
ChainResidue
BASN155

site_idAD2
Number of Residues2
Detailsbinding site for residue MG B 505
ChainResidue
BARG386
BGLU406

site_idAD3
Number of Residues2
Detailsbinding site for residue MG C 101
ChainResidue
AHOH835
CU6

site_idAD4
Number of Residues3
Detailsbinding site for residue MG D 101
ChainResidue
DU6
DU7
DHOH216

Functional Information from PROSITE/UniProt
site_idPS00039
Number of Residues9
DetailsDEAD_ATP_HELICASE DEAD-box subfamily ATP-dependent helicases signature. VLDEADRmL
ChainResidueDetails
AVAL244-LEU252

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00541
ChainResidueDetails
AALA136
BALA136

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-acetyllysine; by EP300 => ECO:0000269|PubMed:20663877
ChainResidueDetails
ALYS42
BLYS42

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:16964243
ChainResidueDetails
ATHR444
BTHR444

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:25772364, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS50
BLYS50

site_idSWS_FT_FI5
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
BLYS449
ALYS449

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PDB entries from 2024-06-12

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