Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6U1F

Thermus thermophilus D-alanine-D-alanine ligase in complex with ATP, D-alanine-D-alanine, Mg2+ and Cs+

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008360biological_processregulation of cell shape
A0008716molecular_functionD-alanine-D-alanine ligase activity
A0009252biological_processpeptidoglycan biosynthetic process
A0016874molecular_functionligase activity
A0046872molecular_functionmetal ion binding
A0071555biological_processcell wall organization
B0003824molecular_functioncatalytic activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0008360biological_processregulation of cell shape
B0008716molecular_functionD-alanine-D-alanine ligase activity
B0009252biological_processpeptidoglycan biosynthetic process
B0016874molecular_functionligase activity
B0046872molecular_functionmetal ion binding
B0071555biological_processcell wall organization
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue MG A 403
ChainResidue
AASP270
AGLU282
AATP407
AHOH553

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 404
ChainResidue
AGLU282
AASN284
ACS405
AATP407
AHOH504

site_idAC3
Number of Residues5
Detailsbinding site for residue CS A 405
ChainResidue
ACYS113
AGLU282
ALEU283
AASN284
AMG404

site_idAC4
Number of Residues1
Detailsbinding site for residue CS A 406
ChainResidue
ATRP133

site_idAC5
Number of Residues30
Detailsbinding site for residue ATP A 407
ChainResidue
ALYS116
APHE151
ALYS153
ATHR157
AGLY158
ASER159
ASER160
AILE163
AGLU189
ALYS190
ALEU192
AGLU197
ATYR218
APHE222
ATYR223
ALYS228
AARG268
AASP270
APHE272
AASN281
AGLU282
AASN284
ADAL401
ADAL402
AMG403
AMG404
AHOH504
AHOH538
AHOH553
AHOH556

site_idAC6
Number of Residues5
Detailsbinding site for residue MG B 403
ChainResidue
BGLU282
BASN284
BCS405
BATP407
BHOH542

site_idAC7
Number of Residues4
Detailsbinding site for residue MG B 404
ChainResidue
BASP270
BGLU282
BATP407
BHOH560

site_idAC8
Number of Residues6
Detailsbinding site for residue CS B 405
ChainResidue
BCYS113
BGLU282
BLEU283
BASN284
BMG403
BHOH542

site_idAC9
Number of Residues1
Detailsbinding site for residue CS B 406
ChainResidue
BTRP133

site_idAD1
Number of Residues32
Detailsbinding site for residue ATP B 407
ChainResidue
BLYS116
BPHE151
BLYS153
BTHR157
BGLY158
BSER159
BSER160
BILE163
BGLU189
BLYS190
BALA191
BLEU192
BGLU197
BTYR218
BPHE222
BTYR223
BLYS228
BARG268
BASP270
BPHE272
BASN281
BGLU282
BASN284
BDAL401
BDAL402
BMG403
BMG404
BHOH540
BHOH542
BHOH549
BHOH560
BHOH593

site_idAD2
Number of Residues12
Detailsbinding site for Di-peptide DAL A 401 and DAL A 402
ChainResidue
ASER293
AMET294
AATP407
AHOH513
AHOH515
AHOH531
AGLU13
AHIS82
ALYS228
ATYR229
AARG268
AGLY288

site_idAD3
Number of Residues13
Detailsbinding site for Di-peptide DAL B 401 and DAL B 402
ChainResidue
BGLU13
BHIS82
BSER159
BLYS228
BTYR229
BARG268
BGLY288
BSER293
BMET294
BATP407
BHOH513
BHOH561
BHOH569

Functional Information from PROSITE/UniProt
site_idPS00843
Number of Residues12
DetailsDALA_DALA_LIGASE_1 D-alanine--D-alanine ligase signature 1. HGrfGEDGtVQG
ChainResidueDetails
AHIS82-GLY93

site_idPS00844
Number of Residues28
DetailsDALA_DALA_LIGASE_2 D-alanine--D-alanine ligase signature 2. LgvrGmARVDFFlaegely.....LnELNTiPG
ChainResidueDetails
ALEU261-GLY288

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00047
ChainResidueDetails
AGLU282
AASN284
BASP147
BASP270
BGLU282
BASN284
AASP147
AASP270

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon