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6PWF

Cryo-EM structure of the ATPase domain of chromatin remodeling factor ISWI bound to the nucleosome

Functional Information from GO Data
ChainGOidnamespacecontents
A0000785cellular_componentchromatin
A0000786cellular_componentnucleosome
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005694cellular_componentchromosome
A0005700cellular_componentpolytene chromosome
A0006334biological_processnucleosome assembly
A0030527molecular_functionstructural constituent of chromatin
A0031492molecular_functionnucleosomal DNA binding
A0035059cellular_componentRCAF complex
A0046982molecular_functionprotein heterodimerization activity
B0000228cellular_componentnuclear chromosome
B0000786cellular_componentnucleosome
B0003676molecular_functionnucleic acid binding
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006334biological_processnucleosome assembly
B0030527molecular_functionstructural constituent of chromatin
B0035059cellular_componentRCAF complex
B0046982molecular_functionprotein heterodimerization activity
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0005700cellular_componentpolytene chromosome
C0005704cellular_componentpolytene chromosome band
C0006325biological_processchromatin organization
C0006334biological_processnucleosome assembly
C0007526biological_processlarval somatic muscle development
C0030527molecular_functionstructural constituent of chromatin
C0031492molecular_functionnucleosomal DNA binding
C0031507biological_processheterochromatin formation
C0046982molecular_functionprotein heterodimerization activity
D0000786cellular_componentnucleosome
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0006325biological_processchromatin organization
D0030527molecular_functionstructural constituent of chromatin
D0044877molecular_functionprotein-containing complex binding
D0046982molecular_functionprotein heterodimerization activity
E0000785cellular_componentchromatin
E0000786cellular_componentnucleosome
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005694cellular_componentchromosome
E0005700cellular_componentpolytene chromosome
E0006334biological_processnucleosome assembly
E0030527molecular_functionstructural constituent of chromatin
E0031492molecular_functionnucleosomal DNA binding
E0035059cellular_componentRCAF complex
E0046982molecular_functionprotein heterodimerization activity
F0000228cellular_componentnuclear chromosome
F0000786cellular_componentnucleosome
F0003676molecular_functionnucleic acid binding
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0006334biological_processnucleosome assembly
F0030527molecular_functionstructural constituent of chromatin
F0035059cellular_componentRCAF complex
F0046982molecular_functionprotein heterodimerization activity
G0000786cellular_componentnucleosome
G0003677molecular_functionDNA binding
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005694cellular_componentchromosome
G0005700cellular_componentpolytene chromosome
G0005704cellular_componentpolytene chromosome band
G0006325biological_processchromatin organization
G0006334biological_processnucleosome assembly
G0007526biological_processlarval somatic muscle development
G0030527molecular_functionstructural constituent of chromatin
G0031492molecular_functionnucleosomal DNA binding
G0031507biological_processheterochromatin formation
G0046982molecular_functionprotein heterodimerization activity
H0000786cellular_componentnucleosome
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005694cellular_componentchromosome
H0006325biological_processchromatin organization
H0030527molecular_functionstructural constituent of chromatin
H0044877molecular_functionprotein-containing complex binding
H0046982molecular_functionprotein heterodimerization activity
K0005524molecular_functionATP binding
K0140658molecular_functionATP-dependent chromatin remodeler activity
Functional Information from PROSITE/UniProt
site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
ALYS14-LEU20

site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
APRO66-ILE74

site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
ChainResidueDetails
DARG89-GLY111

site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
BGLY14-HIS18

site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLqFPV
ChainResidueDetails
CALA20-VAL26

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsDNA_BIND:
ChainResidueDetails
BLYS16-LYS20
FLYS16-LYS20

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:16230526
ChainResidueDetails
BLYS5
BLYS12
FLYS5
FLYS12
HLYS113
HLYS117

site_idSWS_FT_FI3
Number of Residues8
DetailsMOD_RES: N6-succinyllysine => ECO:0000269|PubMed:22389435
ChainResidueDetails
ELYS36
ELYS37
BLYS31
BLYS77
BLYS79
BLYS91
FLYS31
FLYS77
FLYS79
FLYS91

site_idSWS_FT_FI4
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0000269|PubMed:18327897
ChainResidueDetails
BTHR80
BTHR82
FTHR80
FTHR82

site_idSWS_FT_FI5
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15386022
ChainResidueDetails
GLYS118
ELYS23
CLYS118
ALYS23

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: N6-succinyllysine => ECO:0000269|PubMed:22389435
ChainResidueDetails
ALYS56
ELYS56

site_idSWS_FT_FI7
Number of Residues2
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435
ChainResidueDetails
ALYS79
ELYS79

219869

PDB entries from 2024-05-15

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