6PTR
Crystal structure of a DnaN sliding clamp (DNA polymerase III subunit beta) from Bartonella birtlesii bound to griselimycin
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003677 | molecular_function | DNA binding |
A | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006260 | biological_process | DNA replication |
A | 0006271 | biological_process | DNA strand elongation involved in DNA replication |
A | 0008408 | molecular_function | 3'-5' exonuclease activity |
A | 0009360 | cellular_component | DNA polymerase III complex |
A | 0071897 | biological_process | DNA biosynthetic process |
B | 0003677 | molecular_function | DNA binding |
B | 0003887 | molecular_function | DNA-directed DNA polymerase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006260 | biological_process | DNA replication |
B | 0006271 | biological_process | DNA strand elongation involved in DNA replication |
B | 0008408 | molecular_function | 3'-5' exonuclease activity |
B | 0009360 | cellular_component | DNA polymerase III complex |
B | 0071897 | biological_process | DNA biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | binding site for residue EDO A 501 |
Chain | Residue |
A | GLY65 |
A | ALA66 |
A | HOH628 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue EDO A 502 |
Chain | Residue |
A | ASP142 |
A | CYS143 |
A | GLN337 |
A | HOH659 |
A | HOH689 |
site_id | AC3 |
Number of Residues | 7 |
Details | binding site for residue EDO A 503 |
Chain | Residue |
A | ASP50 |
A | GLU52 |
A | SER121 |
A | LYS229 |
A | THR240 |
A | LYS242 |
A | LEU49 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue EDO A 504 |
Chain | Residue |
A | ALA287 |
A | VAL300 |
A | VAL301 |
A | ASN302 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue EDO A 505 |
Chain | Residue |
A | SER135 |
A | LYS136 |
A | HIS139 |
A | HOH657 |
site_id | AC6 |
Number of Residues | 1 |
Details | binding site for residue IOD A 506 |
Chain | Residue |
A | ARG286 |
site_id | AC7 |
Number of Residues | 1 |
Details | binding site for residue IOD A 507 |
Chain | Residue |
A | ARG372 |
site_id | AC8 |
Number of Residues | 1 |
Details | binding site for residue IOD A 509 |
Chain | Residue |
A | ILE29 |
site_id | AC9 |
Number of Residues | 1 |
Details | binding site for residue IOD A 510 |
Chain | Residue |
A | SER133 |
site_id | AD1 |
Number of Residues | 1 |
Details | binding site for residue IOD A 511 |
Chain | Residue |
A | ASN327 |
site_id | AD2 |
Number of Residues | 7 |
Details | binding site for residue EDO B 501 |
Chain | Residue |
B | LEU49 |
B | ASP50 |
B | GLU52 |
B | SER121 |
B | LYS229 |
B | LYS242 |
B | HOH756 |
site_id | AD3 |
Number of Residues | 1 |
Details | binding site for residue IOD B 503 |
Chain | Residue |
B | ILE116 |
site_id | AD4 |
Number of Residues | 1 |
Details | binding site for residue IOD B 504 |
Chain | Residue |
B | SER133 |
site_id | AD5 |
Number of Residues | 1 |
Details | binding site for residue IOD B 505 |
Chain | Residue |
B | ARG286 |
site_id | AD6 |
Number of Residues | 21 |
Details | binding site for ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY chain X |
Chain | Residue |
A | ARG154 |
A | THR177 |
A | GLY179 |
A | HIS180 |
A | PRO249 |
A | ASP250 |
A | VAL254 |
A | MET369 |
A | PRO370 |
A | VAL371 |
A | ARG372 |
A | HOH615 |
A | HOH737 |
X | HOH101 |
X | HOH102 |
X | HOH103 |
X | HOH104 |
X | HOH105 |
X | HOH106 |
X | HOH107 |
X | HOH108 |
site_id | AD7 |
Number of Residues | 26 |
Details | binding site for ACE-MVA-MP8-NZC-LEU-MP8-LEU-MVA-PRO-MLU-GLY chain Y |
Chain | Residue |
A | VAL27 |
A | ILE29 |
A | LEU49 |
A | ASP50 |
A | ASP117 |
A | TYR155 |
A | LYS242 |
B | TYR156 |
B | GLY179 |
B | HIS180 |
B | PRO249 |
B | ASP250 |
B | VAL254 |
B | MET369 |
B | PRO370 |
B | VAL371 |
B | ARG372 |
B | HOH698 |
Y | HOH101 |
Y | HOH102 |
Y | HOH103 |
Y | HOH104 |
Y | HOH105 |
Y | HOH106 |
Y | HOH107 |
Y | HOH108 |