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6OZS

Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 90 min soak in 10 mM Mg2+

Functional Information from GO Data
ChainGOidnamespacecontents
A0004519molecular_functionendonuclease activity
A0006281biological_processDNA repair
B0004519molecular_functionendonuclease activity
B0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MG A 301
ChainResidue
AASP52
AASP240
AMG310
AHOH411
AHOH414
CU318
CMG401

site_idAC2
Number of Residues6
Detailsbinding site for residue PGE A 302
ChainResidue
AARG38
AHOH421
BLEU145
BTHR146
AASP32
AALA35

site_idAC3
Number of Residues5
Detailsbinding site for residue P6G A 303
ChainResidue
AGLN46
ALYS47
BGLN46
BLYS47
BASP117

site_idAC4
Number of Residues1
Detailsbinding site for residue P6G A 304
ChainResidue
ALYS25

site_idAC5
Number of Residues2
Detailsbinding site for residue GOL A 305
ChainResidue
AHIS225
ACYS228

site_idAC6
Number of Residues4
Detailsbinding site for residue GOL A 306
ChainResidue
ATYR79
AGLU80
AASP81
ALYS114

site_idAC7
Number of Residues4
Detailsbinding site for residue NA A 307
ChainResidue
ALEU45
AGLN46
ATYR72
AHOH424

site_idAC8
Number of Residues1
Detailsbinding site for residue EDO A 308
ChainResidue
AVAL77

site_idAC9
Number of Residues8
Detailsbinding site for residue PG4 A 309
ChainResidue
AARG27
ALEU145
ATHR146
AGLU171
AHOH406
BASP32
BALA35
BARG38

site_idAD1
Number of Residues7
Detailsbinding site for residue MG A 310
ChainResidue
AASP52
AASP126
AMG301
AHOH402
CU318
cA304
cHOH402

site_idAD2
Number of Residues4
Detailsbinding site for residue MG B 301
ChainResidue
BASP52
BASP240
BHOH404
DU318

site_idAD3
Number of Residues2
Detailsbinding site for residue PGE B 302
ChainResidue
BHIS226
BCYS228

site_idAD4
Number of Residues2
Detailsbinding site for residue NA B 303
ChainResidue
BGLN46
BTYR72

site_idAD5
Number of Residues5
Detailsbinding site for residue MG B 304
ChainResidue
BASP52
BASP126
BHOH401
DU318
dA304

site_idAD6
Number of Residues7
Detailsbinding site for residue MG C 401
ChainResidue
AASP240
AMG301
CU318
CA319
CHOH501
CHOH502
CHOH503

site_idAD7
Number of Residues3
Detailsbinding site for residue MG D 401
ChainResidue
DU318
DA319
DHOH501

site_idAD8
Number of Residues2
Detailsbinding site for residue EDO D 402
ChainResidue
DU324
DG325

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP52
AASP126
BASP52
BASP126

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Interaction with target DNA => ECO:0000250
ChainResidueDetails
ATYR91
BTYR91

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PDB entries from 2024-06-12

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