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6NTW

Crystal structure of E. coli YcbB

Functional Information from GO Data
ChainGOidnamespacecontents
A0000270biological_processpeptidoglycan metabolic process
A0004180molecular_functioncarboxypeptidase activity
A0005515molecular_functionprotein binding
A0005886cellular_componentplasma membrane
A0006974biological_processDNA damage response
A0008360biological_processregulation of cell shape
A0009252biological_processpeptidoglycan biosynthetic process
A0016020cellular_componentmembrane
A0016740molecular_functiontransferase activity
A0016757molecular_functionglycosyltransferase activity
A0016787molecular_functionhydrolase activity
A0016807molecular_functioncysteine-type carboxypeptidase activity
A0036460biological_processcellular response to cell envelope stress
A0046677biological_processresponse to antibiotic
A0071555biological_processcell wall organization
A0071972molecular_functionpeptidoglycan L,D-transpeptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MXR A 701
ChainResidue
APRO428
AALA505
AILE506
ATYR507
AHIS509
ASER526
ACYS528

site_idAC2
Number of Residues5
Detailsbinding site for residue SO4 A 702
ChainResidue
ALYS179
ALYS179
AHOH803
ASER177
ASER177

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 A 703
ChainResidue
ALYS170
AARG173
ATRP174
ATYR181
AALA182

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 704
ChainResidue
AARG519
AASP520
ATHR521

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 705
ChainResidue
AGLY341
APRO342
AALA343
ATHR344

site_idAC6
Number of Residues3
Detailsbinding site for residue SO4 A 706
ChainResidue
AARG441
ATHR475
AALA476

Functional Information from PROSITE/UniProt
site_idPS00092
Number of Residues7
DetailsN6_MTASE N-6 Adenine-specific DNA methylases signature. VVVNPPW
ChainResidueDetails
AVAL419-TRP425

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsACT_SITE: Proton donor/acceptor => ECO:0000255|PROSITE-ProRule:PRU01373
ChainResidueDetails
AHIS509

site_idSWS_FT_FI2
Number of Residues1
DetailsACT_SITE: Nucleophile => ECO:0000255|PROSITE-ProRule:PRU01373
ChainResidueDetails
ACYS528

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PDB entries from 2024-06-12

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