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6LU8

Cryo-EM structure of a human pre-60S ribosomal subunit - state A

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
10003723molecular_functionRNA binding
10003924molecular_functionGTPase activity
10005525molecular_functionGTP binding
10005634cellular_componentnucleus
10005730cellular_componentnucleolus
10008150biological_processbiological_process
10016020cellular_componentmembrane
10042254biological_processribosome biogenesis
30000055biological_processribosomal large subunit export from nucleus
30003723molecular_functionRNA binding
30005634cellular_componentnucleus
30005654cellular_componentnucleoplasm
30005730cellular_componentnucleolus
30005737cellular_componentcytoplasm
30015031biological_processprotein transport
30016020cellular_componentmembrane
30030674molecular_functionprotein-macromolecule adaptor activity
30032092biological_processpositive regulation of protein binding
30043023molecular_functionribosomal large subunit binding
31902680biological_processpositive regulation of RNA biosynthetic process
31904751biological_processpositive regulation of protein localization to nucleolus
40000079biological_processregulation of cyclin-dependent protein serine/threonine kinase activity
40000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
40001649biological_processosteoblast differentiation
40003723molecular_functionRNA binding
40003924molecular_functionGTPase activity
40005515molecular_functionprotein binding
40005525molecular_functionGTP binding
40005634cellular_componentnucleus
40005654cellular_componentnucleoplasm
40005730cellular_componentnucleolus
40005737cellular_componentcytoplasm
40005829cellular_componentcytosol
40008156biological_processnegative regulation of DNA replication
40008285biological_processnegative regulation of cell population proliferation
40016020cellular_componentmembrane
40022408biological_processnegative regulation of cell-cell adhesion
40030336biological_processnegative regulation of cell migration
40031397biological_processnegative regulation of protein ubiquitination
40031965cellular_componentnuclear membrane
40033342biological_processnegative regulation of collagen binding
40042254biological_processribosome biogenesis
40042273biological_processribosomal large subunit biogenesis
40048471cellular_componentperinuclear region of cytoplasm
40050821biological_processprotein stabilization
41990275molecular_functionpreribosome binding
60000054biological_processribosomal subunit export from nucleus
60000460biological_processmaturation of 5.8S rRNA
60000470biological_processmaturation of LSU-rRNA
60003743molecular_functiontranslation initiation factor activity
60005515molecular_functionprotein binding
60005634cellular_componentnucleus
60005638cellular_componentlamin filament
60005654cellular_componentnucleoplasm
60005730cellular_componentnucleolus
60005737cellular_componentcytoplasm
60005829cellular_componentcytosol
60005882cellular_componentintermediate filament
60006110biological_processregulation of glycolytic process
60006412biological_processtranslation
60006413biological_processtranslational initiation
60030687cellular_componentpreribosome, large subunit precursor
60032868biological_processresponse to insulin
60035195biological_processmiRNA-mediated post-transcriptional gene silencing
60035278biological_processmiRNA-mediated gene silencing by inhibition of translation
60042254biological_processribosome biogenesis
60042256biological_processcytosolic ribosome assembly
60042273biological_processribosomal large subunit biogenesis
60042304biological_processregulation of fatty acid biosynthetic process
60043022molecular_functionribosome binding
60043023molecular_functionribosomal large subunit binding
60045202cellular_componentsynapse
60045652biological_processregulation of megakaryocyte differentiation
60045727biological_processpositive regulation of translation
60070062cellular_componentextracellular exosome
61902626biological_processassembly of large subunit precursor of preribosome
62000377biological_processregulation of reactive oxygen species metabolic process
70003735molecular_functionstructural constituent of ribosome
70005515molecular_functionprotein binding
70005634cellular_componentnucleus
70005654cellular_componentnucleoplasm
70005730cellular_componentnucleolus
70005840cellular_componentribosome
70006412biological_processtranslation
70042254biological_processribosome biogenesis
70042273biological_processribosomal large subunit biogenesis
90003676molecular_functionnucleic acid binding
90003677molecular_functionDNA binding
90005515molecular_functionprotein binding
90005634cellular_componentnucleus
90005654cellular_componentnucleoplasm
90005730cellular_componentnucleolus
90005737cellular_componentcytoplasm
90008270molecular_functionzinc ion binding
90042254biological_processribosome biogenesis
90045944biological_processpositive regulation of transcription by RNA polymerase II
90046872molecular_functionmetal ion binding
91903026biological_processnegative regulation of RNA polymerase II regulatory region sequence-specific DNA binding
91990275molecular_functionpreribosome binding
A0002181biological_processcytoplasmic translation
A0003723molecular_functionRNA binding
A0003735molecular_functionstructural constituent of ribosome
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0005840cellular_componentribosome
A0005925cellular_componentfocal adhesion
A0006412biological_processtranslation
A0014069cellular_componentpostsynaptic density
A0015934cellular_componentlarge ribosomal subunit
A0016020cellular_componentmembrane
A0022625cellular_componentcytosolic large ribosomal subunit
A0022626cellular_componentcytosolic ribosome
A0045471biological_processresponse to ethanol
A0070062cellular_componentextracellular exosome
A1990904cellular_componentribonucleoprotein complex
B0002181biological_processcytoplasmic translation
B0003723molecular_functionRNA binding
B0003735molecular_functionstructural constituent of ribosome
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005730cellular_componentnucleolus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0005840cellular_componentribosome
B0005925cellular_componentfocal adhesion
B0006412biological_processtranslation
B0022625cellular_componentcytosolic large ribosomal subunit
B0022626cellular_componentcytosolic ribosome
B0032991cellular_componentprotein-containing complex
B0070062cellular_componentextracellular exosome
B0071353biological_processcellular response to interleukin-4
B1990904cellular_componentribonucleoprotein complex
C0002181biological_processcytoplasmic translation
C0003723molecular_functionRNA binding
C0003735molecular_functionstructural constituent of ribosome
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0005840cellular_componentribosome
C0006412biological_processtranslation
C0007566biological_processembryo implantation
C0008201molecular_functionheparin binding
C0016020cellular_componentmembrane
C0022625cellular_componentcytosolic large ribosomal subunit
C0022626cellular_componentcytosolic ribosome
C0045296molecular_functioncadherin binding
C1990904cellular_componentribonucleoprotein complex
D0002181biological_processcytoplasmic translation
D0003723molecular_functionRNA binding
D0003735molecular_functionstructural constituent of ribosome
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005730cellular_componentnucleolus
D0005737cellular_componentcytoplasm
D0005791cellular_componentrough endoplasmic reticulum
D0005829cellular_componentcytosol
D0005840cellular_componentribosome
D0005925cellular_componentfocal adhesion
D0006412biological_processtranslation
D0016020cellular_componentmembrane
D0022625cellular_componentcytosolic large ribosomal subunit
D0022626cellular_componentcytosolic ribosome
D0070062cellular_componentextracellular exosome
D1990904cellular_componentribonucleoprotein complex
E0002181biological_processcytoplasmic translation
E0003723molecular_functionRNA binding
E0003735molecular_functionstructural constituent of ribosome
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0005840cellular_componentribosome
E0005925cellular_componentfocal adhesion
E0006412biological_processtranslation
E0014069cellular_componentpostsynaptic density
E0016020cellular_componentmembrane
E0022625cellular_componentcytosolic large ribosomal subunit
E0022626cellular_componentcytosolic ribosome
E0031640biological_processkilling of cells of another organism
E0045202cellular_componentsynapse
E0050829biological_processdefense response to Gram-negative bacterium
E0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
E0070062cellular_componentextracellular exosome
E1990904cellular_componentribonucleoprotein complex
F0002181biological_processcytoplasmic translation
F0003723molecular_functionRNA binding
F0003735molecular_functionstructural constituent of ribosome
F0005515molecular_functionprotein binding
F0005730cellular_componentnucleolus
F0005737cellular_componentcytoplasm
F0005783cellular_componentendoplasmic reticulum
F0005829cellular_componentcytosol
F0005840cellular_componentribosome
F0006412biological_processtranslation
F0022625cellular_componentcytosolic large ribosomal subunit
F0022626cellular_componentcytosolic ribosome
F0045202cellular_componentsynapse
F0045296molecular_functioncadherin binding
F0070062cellular_componentextracellular exosome
F1990904cellular_componentribonucleoprotein complex
G0000470biological_processmaturation of LSU-rRNA
G0002181biological_processcytoplasmic translation
G0003723molecular_functionRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005730cellular_componentnucleolus
G0005737cellular_componentcytoplasm
G0005829cellular_componentcytosol
G0005840cellular_componentribosome
G0005925cellular_componentfocal adhesion
G0006412biological_processtranslation
G0016020cellular_componentmembrane
G0022625cellular_componentcytosolic large ribosomal subunit
G0022626cellular_componentcytosolic ribosome
G0042254biological_processribosome biogenesis
G0045202cellular_componentsynapse
G0045296molecular_functioncadherin binding
G1990904cellular_componentribonucleoprotein complex
H0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
H0002181biological_processcytoplasmic translation
H0003723molecular_functionRNA binding
H0003729molecular_functionmRNA binding
H0003735molecular_functionstructural constituent of ribosome
H0005730cellular_componentnucleolus
H0005737cellular_componentcytoplasm
H0005829cellular_componentcytosol
H0005840cellular_componentribosome
H0006412biological_processtranslation
H0016020cellular_componentmembrane
H0022625cellular_componentcytosolic large ribosomal subunit
H0022626cellular_componentcytosolic ribosome
H1990904cellular_componentribonucleoprotein complex
I0002181biological_processcytoplasmic translation
I0003723molecular_functionRNA binding
I0003735molecular_functionstructural constituent of ribosome
I0005515molecular_functionprotein binding
I0005634cellular_componentnucleus
I0005737cellular_componentcytoplasm
I0005829cellular_componentcytosol
I0005840cellular_componentribosome
I0005925cellular_componentfocal adhesion
I0006412biological_processtranslation
I0016020cellular_componentmembrane
I0019843molecular_functionrRNA binding
I0022625cellular_componentcytosolic large ribosomal subunit
I0022626cellular_componentcytosolic ribosome
I1990904cellular_componentribonucleoprotein complex
K0002181biological_processcytoplasmic translation
K0003723molecular_functionRNA binding
K0003735molecular_functionstructural constituent of ribosome
K0005730cellular_componentnucleolus
K0005737cellular_componentcytoplasm
K0005829cellular_componentcytosol
K0005840cellular_componentribosome
K0006412biological_processtranslation
K0016020cellular_componentmembrane
K0022625cellular_componentcytosolic large ribosomal subunit
K0022626cellular_componentcytosolic ribosome
K0045202cellular_componentsynapse
K1990904cellular_componentribonucleoprotein complex
L0002181biological_processcytoplasmic translation
L0003723molecular_functionRNA binding
L0003735molecular_functionstructural constituent of ribosome
L0005515molecular_functionprotein binding
L0005654cellular_componentnucleoplasm
L0005737cellular_componentcytoplasm
L0005783cellular_componentendoplasmic reticulum
L0005829cellular_componentcytosol
L0005840cellular_componentribosome
L0006412biological_processtranslation
L0015934cellular_componentlarge ribosomal subunit
L0016020cellular_componentmembrane
L0022625cellular_componentcytosolic large ribosomal subunit
L0022626cellular_componentcytosolic ribosome
L1990904cellular_componentribonucleoprotein complex
M0002181biological_processcytoplasmic translation
M0003723molecular_functionRNA binding
M0003735molecular_functionstructural constituent of ribosome
M0005737cellular_componentcytoplasm
M0005829cellular_componentcytosol
M0005840cellular_componentribosome
M0006412biological_processtranslation
M0019843molecular_functionrRNA binding
M0022625cellular_componentcytosolic large ribosomal subunit
M0022626cellular_componentcytosolic ribosome
M0046872molecular_functionmetal ion binding
M0097371molecular_functionMDM2/MDM4 family protein binding
M1901798biological_processpositive regulation of signal transduction by p53 class mediator
M1990904cellular_componentribonucleoprotein complex
M1990948molecular_functionubiquitin ligase inhibitor activity
N0000027biological_processribosomal large subunit assembly
N0002181biological_processcytoplasmic translation
N0003723molecular_functionRNA binding
N0003735molecular_functionstructural constituent of ribosome
N0005515molecular_functionprotein binding
N0005634cellular_componentnucleus
N0005654cellular_componentnucleoplasm
N0005730cellular_componentnucleolus
N0005737cellular_componentcytoplasm
N0005829cellular_componentcytosol
N0005840cellular_componentribosome
N0006364biological_processrRNA processing
N0006412biological_processtranslation
N0006605biological_processprotein targeting
N0008097molecular_function5S rRNA binding
N0010628biological_processpositive regulation of gene expression
N0016020cellular_componentmembrane
N0019843molecular_functionrRNA binding
N0022625cellular_componentcytosolic large ribosomal subunit
N0022626cellular_componentcytosolic ribosome
N0031625molecular_functionubiquitin protein ligase binding
N0032092biological_processpositive regulation of protein binding
N0032435biological_processnegative regulation of proteasomal ubiquitin-dependent protein catabolic process
N0032991cellular_componentprotein-containing complex
N0034504biological_processprotein localization to nucleus
N0042273biological_processribosomal large subunit biogenesis
N0050821biological_processprotein stabilization
N0070062cellular_componentextracellular exosome
N1901796biological_processregulation of signal transduction by p53 class mediator
N1901798biological_processpositive regulation of signal transduction by p53 class mediator
N1904667biological_processnegative regulation of ubiquitin protein ligase activity
N1990904cellular_componentribonucleoprotein complex
N1990948molecular_functionubiquitin ligase inhibitor activity
N2000059biological_processnegative regulation of ubiquitin-dependent protein catabolic process
N2000435biological_processnegative regulation of protein neddylation
O0001501biological_processskeletal system development
O0001503biological_processossification
O0002181biological_processcytoplasmic translation
O0003723molecular_functionRNA binding
O0003735molecular_functionstructural constituent of ribosome
O0005515molecular_functionprotein binding
O0005737cellular_componentcytoplasm
O0005829cellular_componentcytosol
O0005840cellular_componentribosome
O0005925cellular_componentfocal adhesion
O0006412biological_processtranslation
O0006417biological_processregulation of translation
O0007605biological_processsensory perception of sound
O0014069cellular_componentpostsynaptic density
O0022618biological_processprotein-RNA complex assembly
O0022625cellular_componentcytosolic large ribosomal subunit
O0022626cellular_componentcytosolic ribosome
O0033291cellular_componenteukaryotic 80S initiation complex
O0034463biological_process90S preribosome assembly
O0042474biological_processmiddle ear morphogenesis
O0045202cellular_componentsynapse
O0048318biological_processaxial mesoderm development
O1990904cellular_componentribonucleoprotein complex
P0002181biological_processcytoplasmic translation
P0002227biological_processinnate immune response in mucosa
P0003723molecular_functionRNA binding
P0003735molecular_functionstructural constituent of ribosome
P0005615cellular_componentextracellular space
P0005737cellular_componentcytoplasm
P0005829cellular_componentcytosol
P0005840cellular_componentribosome
P0006412biological_processtranslation
P0019731biological_processantibacterial humoral response
P0022625cellular_componentcytosolic large ribosomal subunit
P0022626cellular_componentcytosolic ribosome
P0050830biological_processdefense response to Gram-positive bacterium
P0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
P1990904cellular_componentribonucleoprotein complex
Q0001824biological_processblastocyst development
Q0002181biological_processcytoplasmic translation
Q0003723molecular_functionRNA binding
Q0003735molecular_functionstructural constituent of ribosome
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0005730cellular_componentnucleolus
Q0005737cellular_componentcytoplasm
Q0005783cellular_componentendoplasmic reticulum
Q0005829cellular_componentcytosol
Q0005840cellular_componentribosome
Q0006412biological_processtranslation
Q0016020cellular_componentmembrane
Q0022625cellular_componentcytosolic large ribosomal subunit
Q0022626cellular_componentcytosolic ribosome
Q0045202cellular_componentsynapse
Q0060348biological_processbone development
Q1990904cellular_componentribonucleoprotein complex
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005654cellular_componentnucleoplasm
R0005730cellular_componentnucleolus
R0042254biological_processribosome biogenesis
R0042273biological_processribosomal large subunit biogenesis
R1990275molecular_functionpreribosome binding
S0002181biological_processcytoplasmic translation
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005515molecular_functionprotein binding
S0005737cellular_componentcytoplasm
S0005829cellular_componentcytosol
S0005840cellular_componentribosome
S0006364biological_processrRNA processing
S0006412biological_processtranslation
S0014069cellular_componentpostsynaptic density
S0016020cellular_componentmembrane
S0022625cellular_componentcytosolic large ribosomal subunit
S0022626cellular_componentcytosolic ribosome
S0042273biological_processribosomal large subunit biogenesis
S0045202cellular_componentsynapse
S0045296molecular_functioncadherin binding
S0070062cellular_componentextracellular exosome
S1990904cellular_componentribonucleoprotein complex
U0002181biological_processcytoplasmic translation
U0003723molecular_functionRNA binding
U0003735molecular_functionstructural constituent of ribosome
U0005515molecular_functionprotein binding
U0005634cellular_componentnucleus
U0005737cellular_componentcytoplasm
U0005829cellular_componentcytosol
U0005840cellular_componentribosome
U0006412biological_processtranslation
U0022625cellular_componentcytosolic large ribosomal subunit
U0022626cellular_componentcytosolic ribosome
U0031672cellular_componentA band
U0045202cellular_componentsynapse
U0045296molecular_functioncadherin binding
U0045471biological_processresponse to ethanol
U1990904cellular_componentribonucleoprotein complex
V0002181biological_processcytoplasmic translation
V0003723molecular_functionRNA binding
V0003729molecular_functionmRNA binding
V0003735molecular_functionstructural constituent of ribosome
V0005634cellular_componentnucleus
V0005730cellular_componentnucleolus
V0005737cellular_componentcytoplasm
V0005829cellular_componentcytosol
V0005840cellular_componentribosome
V0005925cellular_componentfocal adhesion
V0006412biological_processtranslation
V0006417biological_processregulation of translation
V0015934cellular_componentlarge ribosomal subunit
V0016020cellular_componentmembrane
V0017148biological_processnegative regulation of translation
V0022625cellular_componentcytosolic large ribosomal subunit
V0022626cellular_componentcytosolic ribosome
V0032496biological_processresponse to lipopolysaccharide
V0042592biological_processhomeostatic process
V0045202cellular_componentsynapse
V0048246biological_processmacrophage chemotaxis
V0060425biological_processlung morphogenesis
V0071346biological_processcellular response to type II interferon
V0097452cellular_componentGAIT complex
V1901194biological_processnegative regulation of formation of translation preinitiation complex
V1990904cellular_componentribonucleoprotein complex
W0002181biological_processcytoplasmic translation
W0003723molecular_functionRNA binding
W0003735molecular_functionstructural constituent of ribosome
W0005515molecular_functionprotein binding
W0005737cellular_componentcytoplasm
W0005783cellular_componentendoplasmic reticulum
W0005829cellular_componentcytosol
W0005840cellular_componentribosome
W0005886cellular_componentplasma membrane
W0006412biological_processtranslation
W0022625cellular_componentcytosolic large ribosomal subunit
W0022626cellular_componentcytosolic ribosome
W1990904cellular_componentribonucleoprotein complex
X0002181biological_processcytoplasmic translation
X0003723molecular_functionRNA binding
X0003735molecular_functionstructural constituent of ribosome
X0005515molecular_functionprotein binding
X0005634cellular_componentnucleus
X0005737cellular_componentcytoplasm
X0005829cellular_componentcytosol
X0005840cellular_componentribosome
X0005925cellular_componentfocal adhesion
X0006412biological_processtranslation
X0022625cellular_componentcytosolic large ribosomal subunit
X0022626cellular_componentcytosolic ribosome
X0046872molecular_functionmetal ion binding
X0070062cellular_componentextracellular exosome
X1990904cellular_componentribonucleoprotein complex
Y0002181biological_processcytoplasmic translation
Y0003723molecular_functionRNA binding
Y0003735molecular_functionstructural constituent of ribosome
Y0005515molecular_functionprotein binding
Y0005634cellular_componentnucleus
Y0005737cellular_componentcytoplasm
Y0005829cellular_componentcytosol
Y0005840cellular_componentribosome
Y0006412biological_processtranslation
Y0015934cellular_componentlarge ribosomal subunit
Y0022625cellular_componentcytosolic large ribosomal subunit
Y0022626cellular_componentcytosolic ribosome
Y1990904cellular_componentribonucleoprotein complex
Z0002181biological_processcytoplasmic translation
Z0003723molecular_functionRNA binding
Z0003735molecular_functionstructural constituent of ribosome
Z0005515molecular_functionprotein binding
Z0005634cellular_componentnucleus
Z0005730cellular_componentnucleolus
Z0005737cellular_componentcytoplasm
Z0005783cellular_componentendoplasmic reticulum
Z0005791cellular_componentrough endoplasmic reticulum
Z0005829cellular_componentcytosol
Z0005840cellular_componentribosome
Z0005925cellular_componentfocal adhesion
Z0006412biological_processtranslation
Z0016020cellular_componentmembrane
Z0022625cellular_componentcytosolic large ribosomal subunit
Z0022626cellular_componentcytosolic ribosome
Z0043232cellular_componentintracellular non-membrane-bounded organelle
Z1990904cellular_componentribonucleoprotein complex
a0002181biological_processcytoplasmic translation
a0003723molecular_functionRNA binding
a0003735molecular_functionstructural constituent of ribosome
a0005515molecular_functionprotein binding
a0005730cellular_componentnucleolus
a0005737cellular_componentcytoplasm
a0005829cellular_componentcytosol
a0005840cellular_componentribosome
a0005925cellular_componentfocal adhesion
a0006412biological_processtranslation
a0016020cellular_componentmembrane
a0022625cellular_componentcytosolic large ribosomal subunit
a0022626cellular_componentcytosolic ribosome
a0045202cellular_componentsynapse
a1990904cellular_componentribonucleoprotein complex
b0002181biological_processcytoplasmic translation
b0003723molecular_functionRNA binding
b0003735molecular_functionstructural constituent of ribosome
b0005515molecular_functionprotein binding
b0005737cellular_componentcytoplasm
b0005829cellular_componentcytosol
b0005840cellular_componentribosome
b0006412biological_processtranslation
b0016020cellular_componentmembrane
b0022625cellular_componentcytosolic large ribosomal subunit
b0022626cellular_componentcytosolic ribosome
b1990904cellular_componentribonucleoprotein complex
c0002181biological_processcytoplasmic translation
c0003723molecular_functionRNA binding
c0003735molecular_functionstructural constituent of ribosome
c0005515molecular_functionprotein binding
c0005737cellular_componentcytoplasm
c0005783cellular_componentendoplasmic reticulum
c0005829cellular_componentcytosol
c0005840cellular_componentribosome
c0006412biological_processtranslation
c0016020cellular_componentmembrane
c0022625cellular_componentcytosolic large ribosomal subunit
c0022626cellular_componentcytosolic ribosome
c0045202cellular_componentsynapse
c1990904cellular_componentribonucleoprotein complex
d0002181biological_processcytoplasmic translation
d0003723molecular_functionRNA binding
d0003735molecular_functionstructural constituent of ribosome
d0005515molecular_functionprotein binding
d0005634cellular_componentnucleus
d0005737cellular_componentcytoplasm
d0005829cellular_componentcytosol
d0005840cellular_componentribosome
d0005925cellular_componentfocal adhesion
d0006412biological_processtranslation
d0008201molecular_functionheparin binding
d0022625cellular_componentcytosolic large ribosomal subunit
d0022626cellular_componentcytosolic ribosome
d0042802molecular_functionidentical protein binding
d0045202cellular_componentsynapse
d0046632biological_processalpha-beta T cell differentiation
d0070062cellular_componentextracellular exosome
d0098793cellular_componentpresynapse
d0098978cellular_componentglutamatergic synapse
d0140236biological_processtranslation at presynapse
d1990904cellular_componentribonucleoprotein complex
e0000122biological_processnegative regulation of transcription by RNA polymerase II
e0001223molecular_functiontranscription coactivator binding
e0002181biological_processcytoplasmic translation
e0003723molecular_functionRNA binding
e0003735molecular_functionstructural constituent of ribosome
e0005515molecular_functionprotein binding
e0005654cellular_componentnucleoplasm
e0005730cellular_componentnucleolus
e0005737cellular_componentcytoplasm
e0005829cellular_componentcytosol
e0005840cellular_componentribosome
e0005925cellular_componentfocal adhesion
e0006412biological_processtranslation
e0006610biological_processribosomal protein import into nucleus
e0008284biological_processpositive regulation of cell population proliferation
e0010628biological_processpositive regulation of gene expression
e0016020cellular_componentmembrane
e0022625cellular_componentcytosolic large ribosomal subunit
e0022626cellular_componentcytosolic ribosome
e0031625molecular_functionubiquitin protein ligase binding
e0032986biological_processprotein-DNA complex disassembly
e0032991cellular_componentprotein-containing complex
e0045202cellular_componentsynapse
e0050821biological_processprotein stabilization
e0070062cellular_componentextracellular exosome
e0070180molecular_functionlarge ribosomal subunit rRNA binding
e0070314biological_processG1 to G0 transition
e0072717biological_processcellular response to actinomycin D
e1901798biological_processpositive regulation of signal transduction by p53 class mediator
e1903450biological_processregulation of G1 to G0 transition
e1904667biological_processnegative regulation of ubiquitin protein ligase activity
e1990904cellular_componentribonucleoprotein complex
e1990948molecular_functionubiquitin ligase inhibitor activity
e2000059biological_processnegative regulation of ubiquitin-dependent protein catabolic process
g0002181biological_processcytoplasmic translation
g0003723molecular_functionRNA binding
g0003735molecular_functionstructural constituent of ribosome
g0005515molecular_functionprotein binding
g0005634cellular_componentnucleus
g0005730cellular_componentnucleolus
g0005737cellular_componentcytoplasm
g0005829cellular_componentcytosol
g0005840cellular_componentribosome
g0006412biological_processtranslation
g0019843molecular_functionrRNA binding
g0022625cellular_componentcytosolic large ribosomal subunit
g0022626cellular_componentcytosolic ribosome
g0045296molecular_functioncadherin binding
g0070062cellular_componentextracellular exosome
g1904841molecular_functionTORC2 complex binding
g1990904cellular_componentribonucleoprotein complex
h0002181biological_processcytoplasmic translation
h0003723molecular_functionRNA binding
h0003735molecular_functionstructural constituent of ribosome
h0005515molecular_functionprotein binding
h0005654cellular_componentnucleoplasm
h0005730cellular_componentnucleolus
h0005737cellular_componentcytoplasm
h0005829cellular_componentcytosol
h0005840cellular_componentribosome
h0006364biological_processrRNA processing
h0006412biological_processtranslation
h0006977biological_processDNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
h0015934cellular_componentlarge ribosomal subunit
h0016020cellular_componentmembrane
h0022625cellular_componentcytosolic large ribosomal subunit
h0022626cellular_componentcytosolic ribosome
h0034644biological_processcellular response to UV
h0042273biological_processribosomal large subunit biogenesis
h0045202cellular_componentsynapse
h0045727biological_processpositive regulation of translation
h0048027molecular_functionmRNA 5'-UTR binding
h0070062cellular_componentextracellular exosome
h0071479biological_processcellular response to ionizing radiation
h0071480biological_processcellular response to gamma radiation
h1902164biological_processpositive regulation of DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
h1902167biological_processpositive regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
h1904803biological_processregulation of translation involved in cellular response to UV
h1990904cellular_componentribonucleoprotein complex
i0002181biological_processcytoplasmic translation
i0003723molecular_functionRNA binding
i0003735molecular_functionstructural constituent of ribosome
i0005515molecular_functionprotein binding
i0005634cellular_componentnucleus
i0005654cellular_componentnucleoplasm
i0005730cellular_componentnucleolus
i0005737cellular_componentcytoplasm
i0005783cellular_componentendoplasmic reticulum
i0005791cellular_componentrough endoplasmic reticulum
i0005829cellular_componentcytosol
i0005840cellular_componentribosome
i0005925cellular_componentfocal adhesion
i0006364biological_processrRNA processing
i0006412biological_processtranslation
i0016020cellular_componentmembrane
i0022625cellular_componentcytosolic large ribosomal subunit
i0022626cellular_componentcytosolic ribosome
i0045202cellular_componentsynapse
i0070062cellular_componentextracellular exosome
i0098556cellular_componentcytoplasmic side of rough endoplasmic reticulum membrane
i1904044biological_processresponse to aldosterone
i1990904cellular_componentribonucleoprotein complex
j0002181biological_processcytoplasmic translation
j0003723molecular_functionRNA binding
j0003735molecular_functionstructural constituent of ribosome
j0005515molecular_functionprotein binding
j0005737cellular_componentcytoplasm
j0005829cellular_componentcytosol
j0005840cellular_componentribosome
j0005925cellular_componentfocal adhesion
j0006412biological_processtranslation
j0016020cellular_componentmembrane
j0022625cellular_componentcytosolic large ribosomal subunit
j0022626cellular_componentcytosolic ribosome
j0070062cellular_componentextracellular exosome
j1990904cellular_componentribonucleoprotein complex
k0002181biological_processcytoplasmic translation
k0003723molecular_functionRNA binding
k0003735molecular_functionstructural constituent of ribosome
k0005737cellular_componentcytoplasm
k0005829cellular_componentcytosol
k0005840cellular_componentribosome
k0006412biological_processtranslation
k0016020cellular_componentmembrane
k0022625cellular_componentcytosolic large ribosomal subunit
k0022626cellular_componentcytosolic ribosome
k1990904cellular_componentribonucleoprotein complex
l0002181biological_processcytoplasmic translation
l0003723molecular_functionRNA binding
l0003735molecular_functionstructural constituent of ribosome
l0005515molecular_functionprotein binding
l0005737cellular_componentcytoplasm
l0005829cellular_componentcytosol
l0005840cellular_componentribosome
l0006412biological_processtranslation
l0016020cellular_componentmembrane
l0022625cellular_componentcytosolic large ribosomal subunit
l0022626cellular_componentcytosolic ribosome
l0030425cellular_componentdendrite
l0036464cellular_componentcytoplasmic ribonucleoprotein granule
l0044297cellular_componentcell body
l0045202cellular_componentsynapse
l0070062cellular_componentextracellular exosome
l1990904cellular_componentribonucleoprotein complex
m0002181biological_processcytoplasmic translation
m0003723molecular_functionRNA binding
m0003735molecular_functionstructural constituent of ribosome
m0005515molecular_functionprotein binding
m0005654cellular_componentnucleoplasm
m0005737cellular_componentcytoplasm
m0005829cellular_componentcytosol
m0005840cellular_componentribosome
m0005925cellular_componentfocal adhesion
m0006412biological_processtranslation
m0014069cellular_componentpostsynaptic density
m0015934cellular_componentlarge ribosomal subunit
m0016020cellular_componentmembrane
m0019843molecular_functionrRNA binding
m0022625cellular_componentcytosolic large ribosomal subunit
m0022626cellular_componentcytosolic ribosome
m0045202cellular_componentsynapse
m0098794cellular_componentpostsynapse
m1990904cellular_componentribonucleoprotein complex
n0000049molecular_functiontRNA binding
n0002181biological_processcytoplasmic translation
n0003723molecular_functionRNA binding
n0003735molecular_functionstructural constituent of ribosome
n0005515molecular_functionprotein binding
n0005737cellular_componentcytoplasm
n0005829cellular_componentcytosol
n0005840cellular_componentribosome
n0006364biological_processrRNA processing
n0006412biological_processtranslation
n0016020cellular_componentmembrane
n0022625cellular_componentcytosolic large ribosomal subunit
n0022626cellular_componentcytosolic ribosome
n0042273biological_processribosomal large subunit biogenesis
n0070062cellular_componentextracellular exosome
n1990904cellular_componentribonucleoprotein complex
o0002181biological_processcytoplasmic translation
o0003677molecular_functionDNA binding
o0003723molecular_functionRNA binding
o0003735molecular_functionstructural constituent of ribosome
o0005515molecular_functionprotein binding
o0005634cellular_componentnucleus
o0005737cellular_componentcytoplasm
o0005783cellular_componentendoplasmic reticulum
o0005791cellular_componentrough endoplasmic reticulum
o0005829cellular_componentcytosol
o0005840cellular_componentribosome
o0005925cellular_componentfocal adhesion
o0006355biological_processregulation of DNA-templated transcription
o0006412biological_processtranslation
o0014069cellular_componentpostsynaptic density
o0016020cellular_componentmembrane
o0022625cellular_componentcytosolic large ribosomal subunit
o0022626cellular_componentcytosolic ribosome
o0036464cellular_componentcytoplasmic ribonucleoprotein granule
o0045202cellular_componentsynapse
o0045296molecular_functioncadherin binding
o1990904cellular_componentribonucleoprotein complex
p0000463biological_processmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
p0002181biological_processcytoplasmic translation
p0003677molecular_functionDNA binding
p0003723molecular_functionRNA binding
p0003729molecular_functionmRNA binding
p0003735molecular_functionstructural constituent of ribosome
p0005515molecular_functionprotein binding
p0005634cellular_componentnucleus
p0005730cellular_componentnucleolus
p0005737cellular_componentcytoplasm
p0005829cellular_componentcytosol
p0005840cellular_componentribosome
p0005925cellular_componentfocal adhesion
p0006364biological_processrRNA processing
p0006412biological_processtranslation
p0014069cellular_componentpostsynaptic density
p0016020cellular_componentmembrane
p0022625cellular_componentcytosolic large ribosomal subunit
p0022626cellular_componentcytosolic ribosome
p0042273biological_processribosomal large subunit biogenesis
p0042802molecular_functionidentical protein binding
p1990904cellular_componentribonucleoprotein complex
r0000027biological_processribosomal large subunit assembly
r0002181biological_processcytoplasmic translation
r0003723molecular_functionRNA binding
r0003730molecular_functionmRNA 3'-UTR binding
r0003735molecular_functionstructural constituent of ribosome
r0005515molecular_functionprotein binding
r0005634cellular_componentnucleus
r0005654cellular_componentnucleoplasm
r0005730cellular_componentnucleolus
r0005737cellular_componentcytoplasm
r0005783cellular_componentendoplasmic reticulum
r0005829cellular_componentcytosol
r0005840cellular_componentribosome
r0005925cellular_componentfocal adhesion
r0006364biological_processrRNA processing
r0006412biological_processtranslation
r0008097molecular_function5S rRNA binding
r0010628biological_processpositive regulation of gene expression
r0016020cellular_componentmembrane
r0019843molecular_functionrRNA binding
r0022625cellular_componentcytosolic large ribosomal subunit
r0022626cellular_componentcytosolic ribosome
r0031625molecular_functionubiquitin protein ligase binding
r0032991cellular_componentprotein-containing complex
r0042273biological_processribosomal large subunit biogenesis
r0045727biological_processpositive regulation of translation
r0048027molecular_functionmRNA 5'-UTR binding
r0050821biological_processprotein stabilization
r0070062cellular_componentextracellular exosome
r1901796biological_processregulation of signal transduction by p53 class mediator
r1904667biological_processnegative regulation of ubiquitin protein ligase activity
r1990904cellular_componentribonucleoprotein complex
r1990948molecular_functionubiquitin ligase inhibitor activity
r2000059biological_processnegative regulation of ubiquitin-dependent protein catabolic process
r2000435biological_processnegative regulation of protein neddylation
z0001099molecular_functionbasal RNA polymerase II transcription machinery binding
z0003723molecular_functionRNA binding
z0005515molecular_functionprotein binding
z0005634cellular_componentnucleus
z0005694cellular_componentchromosome
z0005730cellular_componentnucleolus
z0060999biological_processpositive regulation of dendritic spine development
z0097484biological_processdendrite extension
Functional Information from PROSITE/UniProt
site_idPS00709
Number of Residues25
DetailsRIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkyvlGyKqtLKmiRqGkaKlVIL
ChainResidueDetails
ESER24-LEU48

site_idPS00993
Number of Residues21
DetailsRIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGTacGKyyrvctLaIiDpG
ChainResidueDetails
EGLU80-GLY100

site_idPS01145
Number of Residues14
DetailsRIBOSOMAL_L34E Ribosomal protein L34e signature. TaSnKtrlsRTPGN
ChainResidueDetails
FTHR15-ASN28

site_idPS01194
Number of Residues24
DetailsRIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGYVIYRiRVrRG
ChainResidueDetails
UASP46-GLY69

site_idPS01106
Number of Residues18
DetailsRIBOSOMAL_L18E Ribosomal protein L18e signature. KrLfmSRtnRPpLSLsRM
ChainResidueDetails
ZLYS49-MET66

site_idPS00526
Number of Residues20
DetailsRIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaSsvlrCGkkkVWLDP
ChainResidueDetails
aGLN7-PRO26

site_idPS00783
Number of Residues24
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMLPhktkrGQaaldrLkVFdG
ChainResidueDetails
VVAL84-GLY107

site_idPS01190
Number of Residues11
DetailsRIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRaMELLK
ChainResidueDetails
KPRO52-LYS62

site_idPS00464
Number of Residues25
DetailsRIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinpymsspCHIEMiL
ChainResidueDetails
YARG126-LEU150

site_idPS01144
Number of Residues15
DetailsRIBOSOMAL_L31E Ribosomal protein L31e signature. VRIDtrLNkAvWaKG
ChainResidueDetails
jVAL62-GLY76

site_idPS00475
Number of Residues32
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGkGkLpkqp.ViVkakfFSrrAeekIksvG
ChainResidueDetails
LLYS110-GLY141

site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AVVIrqrksyrrk.DGvflyFedNagVI
ChainResidueDetails
eALA79-ILE105

site_idPS01108
Number of Residues19
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVqVVrGhyKGqqiGkV
ChainResidueDetails
hASP52-VAL70

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FgqdemiDviGvTkGKGykGvtsR
ChainResidueDetails
BPHE211-ARG234

site_idPS01073
Number of Residues18
DetailsRIBOSOMAL_L24E Ribosomal protein L24e signature. FcSgpIyPGhGmmFvRnD
ChainResidueDetails
7PHE8-ASP25

site_idPS01199
Number of Residues20
DetailsRIBOSOMAL_L1 Ribosomal protein L1 signature. IkqIpriLGpgLNKAGkFPS
ChainResidueDetails
AILE117-SER136

site_idPS00700
Number of Residues22
DetailsRIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QattVknKdiRkFlDGIYVseK
ChainResidueDetails
IGLN163-LYS184

site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PrvRGVAmNPvE
ChainResidueDetails
mPRO197-GLU208

site_idPS01105
Number of Residues22
DetailsRIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKVtRaHGnsGmVrAkFrsnLP
ChainResidueDetails
nGLY72-PRO93

site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CrkmgVPYciIkGKarLG
ChainResidueDetails
GCYS174-GLY191

site_idPS01170
Number of Residues19
DetailsRIBOSOMAL_L6E Ribosomal protein L6e signature. NrvPLRRthqkFVIATSt.K
ChainResidueDetails
oASN182-LYS200

site_idPS00051
Number of Residues17
DetailsRIBOSOMAL_L39E Ribosomal protein L39e signature. KTgnkIryNskrRHWRR
ChainResidueDetails
PLYS30-ARG46

site_idPS01077
Number of Residues20
DetailsRIBOSOMAL_L37E Ribosomal protein L37e signature. GTsSfGkRrnkt.HtlCrRCG
ChainResidueDetails
MGLY4-GLY23

site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. KLSKIRvVRKSIARV
ChainResidueDetails
HLYS43-VAL57

site_idPS00580
Number of Residues21
DetailsRIBOSOMAL_L32E Ribosomal protein L32e signature. FiRhqsdRyvKIkrn..WRKprG
ChainResidueDetails
kPHE20-GLY40

site_idPS00028
Number of Residues23
DetailsZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Cla..CaryFidstnlktHfrskdH
ChainResidueDetails
9CYS63-HIS85

site_idPS01172
Number of Residues12
DetailsRIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKivLRleC
ChainResidueDetails
WLYS61-CYS72

site_idPS00050
Number of Residues16
DetailsRIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVRLApdydaldV
ChainResidueDetails
gLYS134-VAL149

site_idPS00634
Number of Residues33
DetailsRIBOSOMAL_L30 Ribosomal protein L30 signature. VLqlLrLrQifNgTfvklnkasinMLriVepYI
ChainResidueDetails
pVAL108-ILE140

site_idPS01107
Number of Residues12
DetailsRIBOSOMAL_L27E Ribosomal protein L27e signature. GKNkWFFqkLRF
ChainResidueDetails
iGLY125-PHE136

site_idPS01104
Number of Residues15
DetailsRIBOSOMAL_L13E Ribosomal protein L13e signature. RaGRGFSLeELrvaG
ChainResidueDetails
QARG71-GLY85

site_idPS00358
Number of Residues17
DetailsRIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLTGQtpVfSkARyT
ChainResidueDetails
NLEU40-THR56

site_idPS00687
Number of Residues8
DetailsALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. GESSGKNV
ChainResidueDetails
DGLY15-VAL22

site_idPS00939
Number of Residues27
DetailsRIBOSOMAL_L1E Ribosomal protein L1e signature. NttqKryAIcSALaASAlpalvmsKGH
ChainResidueDetails
DASN116-HIS142

site_idPS01171
Number of Residues26
DetailsRIBOSOMAL_L21E Ribosomal protein L21e signature. GDiVdikgmgtvqk.GmpHkcYhGkTG
ChainResidueDetails
cGLY37-GLY62

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
oLYS207
zLYS67
aARG38

site_idSWS_FT_FI2
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25218447, ECO:0007744|PubMed:28112733
ChainResidueDetails
rLYS5
zLYS74
mLYS149
mLYS234
mLYS250

site_idSWS_FT_FI3
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163
ChainResidueDetails
GLYS245
rSER185
jLYS70
lLYS65
GLYS21
GLYS48
GLYS125

site_idSWS_FT_FI4
Number of Residues1
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000250|UniProtKB:P47962
ChainResidueDetails
rLYS220
OLYS9

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163
ChainResidueDetails
rTHR232
BLYS366

site_idSWS_FT_FI6
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:21406692
ChainResidueDetails
bLYS170
rSER272
bLYS128

site_idSWS_FT_FI7
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25114211
ChainResidueDetails
BLYS386
BLYS393
QLYS177
rLYS220
QLYS174

site_idSWS_FT_FI8
Number of Residues1
DetailsMOD_RES: Citrulline => ECO:0000250|UniProtKB:Q9D8E6
ChainResidueDetails
DARG300
BLYS399

site_idSWS_FT_FI9
Number of Residues1
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000250|UniProtKB:Q9D8E6
ChainResidueDetails
DLYS364
BLYS366

site_idSWS_FT_FI10
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:20068231
ChainResidueDetails
4LYS332
4LYS534
DSER365

site_idSWS_FT_FI11
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
DLYS239
DLYS327

site_idSWS_FT_FI12
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO1); alternate => ECO:0007744|PubMed:25114211
ChainResidueDetails
DLYS364

219140

PDB entries from 2024-05-01

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