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6HLZ

Structure in C2 form of the PBP AgtB from A.tumefacien R10 in complex with agropinic acid

Functional Information from GO Data
ChainGOidnamespacecontents
A0015846biological_processpolyamine transport
A0019808molecular_functionpolyamine binding
A0042597cellular_componentperiplasmic space
B0015846biological_processpolyamine transport
B0019808molecular_functionpolyamine binding
B0042597cellular_componentperiplasmic space
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue EDO A 401
ChainResidue
AEDO422
AEDO425

site_idAC2
Number of Residues1
Detailsbinding site for residue EDO A 402
ChainResidue
AP4G431

site_idAC3
Number of Residues2
Detailsbinding site for residue EDO A 403
ChainResidue
AHOH550
BEDO405

site_idAC4
Number of Residues1
Detailsbinding site for residue EDO A 404
ChainResidue
AEDO411

site_idAC5
Number of Residues2
Detailsbinding site for residue EDO A 405
ChainResidue
AP6G442
BEDO409

site_idAC6
Number of Residues2
Detailsbinding site for residue EDO A 406
ChainResidue
AHOH516
APEG437

site_idAC7
Number of Residues2
Detailsbinding site for residue EDO A 407
ChainResidue
APEG436
AP6G442

site_idAC8
Number of Residues2
Detailsbinding site for residue EDO A 408
ChainResidue
AEDO422
AHOH616

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO A 409
ChainResidue
AEDO419
AP4G429
AHOH546

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO A 410
ChainResidue
ATYR107
AGLU117
AARG120
APEG435

site_idAD2
Number of Residues3
Detailsbinding site for residue EDO A 411
ChainResidue
AEDO404
AEDO416
AHOH561

site_idAD3
Number of Residues3
Detailsbinding site for residue EDO A 412
ChainResidue
AP6G442
AHOH655
BEDO413

site_idAD4
Number of Residues4
Detailsbinding site for residue EDO A 413
ChainResidue
ATYR253
AHOH595
BLYS111
BPEG424

site_idAD5
Number of Residues2
Detailsbinding site for residue EDO A 415
ChainResidue
AHOH569
AHOH587

site_idAD6
Number of Residues3
Detailsbinding site for residue EDO A 416
ChainResidue
AEDO411
APEG438
AHOH534

site_idAD7
Number of Residues1
Detailsbinding site for residue EDO A 417
ChainResidue
AHOH596

site_idAD8
Number of Residues3
Detailsbinding site for residue EDO A 418
ChainResidue
AHOH633
BEDO406
BP4G418

site_idAD9
Number of Residues5
Detailsbinding site for residue EDO A 419
ChainResidue
AEDO409
AEDO420
AP4G429
AHOH558
AHOH592

site_idAE1
Number of Residues4
Detailsbinding site for residue EDO A 420
ChainResidue
AEDO419
AP4G429
APEG439
AHOH592

site_idAE2
Number of Residues2
Detailsbinding site for residue EDO A 421
ChainResidue
AP4G430
AHOH574

site_idAE3
Number of Residues5
Detailsbinding site for residue EDO A 422
ChainResidue
AEDO401
AEDO408
AP4G430
AHOH616
AHOH647

site_idAE4
Number of Residues1
Detailsbinding site for residue EDO A 424
ChainResidue
AP4G430

site_idAE5
Number of Residues1
Detailsbinding site for residue EDO A 425
ChainResidue
AEDO401

site_idAE6
Number of Residues4
Detailsbinding site for residue EDO A 426
ChainResidue
AP4G431
AHOH541
AHOH638
AHOH645

site_idAE7
Number of Residues4
Detailsbinding site for residue P4G A 429
ChainResidue
AEDO409
AEDO419
AEDO420
APEG439

site_idAE8
Number of Residues3
Detailsbinding site for residue P4G A 430
ChainResidue
AEDO421
AEDO422
AEDO424

site_idAE9
Number of Residues4
Detailsbinding site for residue P4G A 431
ChainResidue
AEDO402
AEDO426
APEG436
AHOH644

site_idAF1
Number of Residues18
Detailsbinding site for residue G9Z A 432
ChainResidue
ATYR37
APHE41
AGLU89
APHE130
APRO162
ASER163
AASP164
ATHR166
AALA208
AARG229
AGLU252
ATYR288
AHOH525
AHOH543
AHOH544
AHOH545
AHOH599
AHOH608

site_idAF2
Number of Residues1
Detailsbinding site for residue PEG A 433
ChainResidue
ATYR242

site_idAF3
Number of Residues1
Detailsbinding site for residue PEG A 434
ChainResidue
AHOH604

site_idAF4
Number of Residues5
Detailsbinding site for residue PEG A 435
ChainResidue
APRO52
AALA56
APHE272
AGLU277
AEDO410

site_idAF5
Number of Residues4
Detailsbinding site for residue PEG A 436
ChainResidue
AP4G431
AP6G442
AHOH555
AEDO407

site_idAF6
Number of Residues1
Detailsbinding site for residue PEG A 437
ChainResidue
AEDO406

site_idAF7
Number of Residues3
Detailsbinding site for residue PEG A 438
ChainResidue
AEDO416
AHOH573
BEDO406

site_idAF8
Number of Residues4
Detailsbinding site for residue PEG A 439
ChainResidue
AEDO420
AP4G429
AHOH547
BPEG421

site_idAF9
Number of Residues4
Detailsbinding site for residue PEG A 440
ChainResidue
AASN321
ALYS323
AHOH566
BASN271

site_idAG1
Number of Residues6
Detailsbinding site for residue P6G A 442
ChainResidue
AEDO405
AEDO407
AEDO412
APEG436
AHOH509
AHOH563

site_idAG2
Number of Residues6
Detailsbinding site for residue EDO B 401
ChainResidue
BSER36
BTYR37
BTHR65
BGLY66
BTHR67
BHOH679

site_idAG3
Number of Residues8
Detailsbinding site for residue EDO B 402
ChainResidue
BTYR69
BPRO91
BALA92
BSER95
BASP164
BTYR329
BHOH510
BHOH642

site_idAG4
Number of Residues5
Detailsbinding site for residue EDO B 403
ChainResidue
BTYR107
BARG120
BTHR121
BLYS122
BHOH534

site_idAG5
Number of Residues3
Detailsbinding site for residue EDO B 404
ChainResidue
BEDO405
BEDO408
BHOH647

site_idAG6
Number of Residues3
Detailsbinding site for residue EDO B 405
ChainResidue
AEDO403
BEDO404
BHOH611

site_idAG7
Number of Residues5
Detailsbinding site for residue EDO B 406
ChainResidue
AEDO418
APEG438
BEDO408
BP4G418
BHOH627

site_idAG8
Number of Residues1
Detailsbinding site for residue EDO B 407
ChainResidue
BEDO414

site_idAG9
Number of Residues4
Detailsbinding site for residue EDO B 408
ChainResidue
BEDO404
BEDO406
BHOH566
BHOH649

site_idAH1
Number of Residues3
Detailsbinding site for residue EDO B 409
ChainResidue
AEDO405
BHOH617
BHOH658

site_idAH2
Number of Residues3
Detailsbinding site for residue EDO B 411
ChainResidue
BASP187
BEDO416
BP4G417

site_idAH3
Number of Residues3
Detailsbinding site for residue EDO B 412
ChainResidue
BP4G418
BHOH636
BHOH639

site_idAH4
Number of Residues1
Detailsbinding site for residue EDO B 413
ChainResidue
AEDO412

site_idAH5
Number of Residues2
Detailsbinding site for residue EDO B 414
ChainResidue
BEDO407
BHOH560

site_idAH6
Number of Residues4
Detailsbinding site for residue EDO B 415
ChainResidue
BASP210
BLEU214
BGLN217
BHOH635

site_idAH7
Number of Residues2
Detailsbinding site for residue EDO B 416
ChainResidue
BEDO411
BPEG423

site_idAH8
Number of Residues3
Detailsbinding site for residue P4G B 417
ChainResidue
BEDO411
BPEG422
BHOH583

site_idAH9
Number of Residues6
Detailsbinding site for residue P4G B 418
ChainResidue
AEDO418
BEDO406
BEDO412
BP4G419
BHOH556
BHOH576

site_idAI1
Number of Residues2
Detailsbinding site for residue P4G B 419
ChainResidue
BP4G418
BPEG423

site_idAI2
Number of Residues18
Detailsbinding site for residue G9Z B 420
ChainResidue
BTYR37
BPHE41
BGLU89
BMET128
BPHE130
BPRO162
BSER163
BTHR166
BALA208
BARG229
BGLU252
BTYR288
BHOH504
BHOH506
BHOH512
BHOH588
BHOH606
BHOH651

site_idAI3
Number of Residues2
Detailsbinding site for residue PEG B 421
ChainResidue
APEG439
BHOH532

site_idAI4
Number of Residues2
Detailsbinding site for residue PEG B 422
ChainResidue
BP4G417
BHOH626

site_idAI5
Number of Residues3
Detailsbinding site for residue PEG B 423
ChainResidue
BEDO416
BP4G419
BHOH521

site_idAI6
Number of Residues4
Detailsbinding site for residue PEG B 424
ChainResidue
ASER322
AASN326
AEDO413
BLYS111

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PDB entries from 2024-06-12

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