6GUZ

Ground state structure of Archaerhodopsin-3 obtained from LCP crystals using a thin-film sandwich at room temperature

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005216	molecular_function	monoatomic ion channel activity
A	0005886	cellular_component	plasma membrane
A	0006811	biological_process	monoatomic ion transport
A	0007602	biological_process	phototransduction
A	0009881	molecular_function	photoreceptor activity
A	0016020	cellular_component	membrane
A	1902600	biological_process	proton transmembrane transport

Functional Information from PDB Data

site_id	AC1
Number of Residues	11
Details	binding site for residue RET A 300

Chain	Residue
A	TRP96
A	ASP222
A	LYS226
A	THR99
A	THR100
A	TRP148
A	SER151
A	THR152
A	TRP192
A	TYR195
A	TRP199

---

site_id	AC2
Number of Residues	4
Details	binding site for residue R16 A 302

Chain	Residue
A	THR120
A	GLY123
A	VAL223
A	DD9311

---

site_id	AC3
Number of Residues	1
Details	binding site for residue DD9 A 303

Chain	Residue
A	D10317

---

site_id	AC4
Number of Residues	2
Details	binding site for residue R16 A 304

Chain	Residue
A	ILE32
A	PHE231

---

site_id	AC5
Number of Residues	2
Details	binding site for residue DD9 A 309

Chain	Residue
A	LEU28
A	LEU68

---

site_id	AC6
Number of Residues	1
Details	binding site for residue DD9 A 310

Chain	Residue
A	LEU68

---

site_id	AC7
Number of Residues	1
Details	binding site for residue DD9 A 311

Chain	Residue
A	R16302

---

site_id	AC8
Number of Residues	1
Details	binding site for residue D10 A 317

Chain	Residue
A	DD9303

---

site_id	AC9
Number of Residues	6
Details	binding site for residue CA A 713

Chain	Residue
A	ASP11
A	ASP46
A	ASP48
A	LEU240
A	HOH586
A	HOH589

---

site_id	AD1
Number of Residues	6
Details	binding site for residue NA A 714

Chain	Residue
A	ASP11
A	LEU12
A	LEU13
A	ASP15
A	ARG17
A	THR20

---

site_id	AD2
Number of Residues	5
Details	binding site for residue CL A 715

Chain	Residue
A	ALA8
A	GLY210
A	GLY212
A	ILE213
A	PRO246

---

site_id	AD3
Number of Residues	2
Details	binding site for residue CL A 716

Chain	Residue
A	LYS47
A	HOH575

---

site_id	AD4
Number of Residues	2
Details	binding site for residue CL A 717

Chain	Residue
A	THR45
A	ASP46

---

Functional Information from PROSITE/UniProt

site_id	PS00327
Number of Residues	12
Details	BACTERIAL_OPSIN_RET Bacterial rhodopsins retinal binding site. FMVLDVtAKvGF

Chain	Residue	Details
A	PHE218-PHE229

---

site_id	PS00950
Number of Residues	13
Details	BACTERIAL_OPSIN_1 Bacterial rhodopsins signature 1. RYaDWlFTTPLLL

Chain	Residue	Details
A	ARG92-LEU104

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	38
Details	TOPO_DOM: Extracellular => ECO:0000250

Chain	Residue	Details
A	PCA7-PRO18
A	PHE72-TYR89
A	SER138-ALA141
A	THR203-GLY210

---

site_id	SWS_FT_FI2
Number of Residues	21
Details	TRANSMEM: Helical; Name=Helix A => ECO:0000250

Chain	Residue	Details
A	GLU19-ARG40

---

site_id	SWS_FT_FI3
Number of Residues	12
Details	TOPO_DOM: Cytoplasmic => ECO:0000250

Chain	Residue	Details
A	GLY41-ALA49
A	LYS112-ASP114
A	LYS171-ARG173

---

site_id	SWS_FT_FI4
Number of Residues	21
Details	TRANSMEM: Helical; Name=Helix B => ECO:0000250

Chain	Residue	Details
A	ARG50-PHE71

---

site_id	SWS_FT_FI5
Number of Residues	21
Details	TRANSMEM: Helical; Name=Helix C => ECO:0000250

Chain	Residue	Details
A	TYR90-ALA111

---

site_id	SWS_FT_FI6
Number of Residues	22
Details	TRANSMEM: Helical; Name=Helix D => ECO:0000250

Chain	Residue	Details
A	ARG115-LEU137

---

site_id	SWS_FT_FI7
Number of Residues	28
Details	TRANSMEM: Helical; Name=Helix E => ECO:0000250

Chain	Residue	Details
A	ILE142-ALA170

---

site_id	SWS_FT_FI8
Number of Residues	28
Details	TRANSMEM: Helical; Name=Helix F => ECO:0000250

Chain	Residue	Details
A	GLY174-GLY202

---

site_id	SWS_FT_FI9
Number of Residues	32
Details	TRANSMEM: Helical; Name=Helix G => ECO:0000250

Chain	Residue	Details
A	LEU211-THR243

---

site_id	SWS_FT_FI10
Number of Residues	1
Details	MOD_RES: Pyrrolidone carboxylic acid => ECO:0000250

Chain	Residue	Details
A	PCA7

---

site_id	SWS_FT_FI11
Number of Residues	1
Details	MOD_RES: N6-(retinylidene)lysine => ECO:0000250

Chain	Residue	Details
A	LYS226

---