6FXQ
Structure of coproheme decarboxylase from Listeria monocytogenes during turnover
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004601 | molecular_function | peroxidase activity |
A | 0006783 | biological_process | heme biosynthetic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0020037 | molecular_function | heme binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0098869 | biological_process | cellular oxidant detoxification |
B | 0004601 | molecular_function | peroxidase activity |
B | 0006783 | biological_process | heme biosynthetic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0020037 | molecular_function | heme binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0098869 | biological_process | cellular oxidant detoxification |
C | 0004601 | molecular_function | peroxidase activity |
C | 0006783 | biological_process | heme biosynthetic process |
C | 0016491 | molecular_function | oxidoreductase activity |
C | 0020037 | molecular_function | heme binding |
C | 0046872 | molecular_function | metal ion binding |
C | 0098869 | biological_process | cellular oxidant detoxification |
D | 0004601 | molecular_function | peroxidase activity |
D | 0006783 | biological_process | heme biosynthetic process |
D | 0016491 | molecular_function | oxidoreductase activity |
D | 0020037 | molecular_function | heme binding |
D | 0046872 | molecular_function | metal ion binding |
D | 0098869 | biological_process | cellular oxidant detoxification |
E | 0004601 | molecular_function | peroxidase activity |
E | 0006783 | biological_process | heme biosynthetic process |
E | 0016491 | molecular_function | oxidoreductase activity |
E | 0020037 | molecular_function | heme binding |
E | 0046872 | molecular_function | metal ion binding |
E | 0098869 | biological_process | cellular oxidant detoxification |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue NA A 301 |
Chain | Residue |
A | ILE63 |
A | LEU64 |
A | GLY65 |
A | ALA68 |
A | ASP69 |
A | HOH401 |
B | GLU86 |
site_id | AC2 |
Number of Residues | 22 |
Details | binding site for residue FEC A 302 |
Chain | Residue |
A | TYR147 |
A | MET149 |
A | LYS151 |
A | HIS174 |
A | GLY175 |
A | GLY178 |
A | ARG179 |
A | GLN187 |
A | TRP200 |
A | LEU204 |
A | ILE215 |
A | MET219 |
A | SER225 |
A | PHE231 |
A | VOV303 |
A | HOH405 |
A | HOH409 |
A | HOH420 |
A | HOH451 |
D | HIS42 |
A | SER111 |
A | TYR113 |
site_id | AC3 |
Number of Residues | 23 |
Details | binding site for residue VOV A 303 |
Chain | Residue |
A | LEU110 |
A | SER111 |
A | TYR113 |
A | ARG133 |
A | TYR147 |
A | MET149 |
A | LYS151 |
A | TRP159 |
A | HIS174 |
A | GLY178 |
A | ARG179 |
A | VAL185 |
A | GLN187 |
A | TRP200 |
A | LEU204 |
A | ILE215 |
A | MET219 |
A | SER225 |
A | PHE231 |
A | FEC302 |
A | HOH405 |
A | HOH409 |
A | HOH451 |
site_id | AC4 |
Number of Residues | 7 |
Details | binding site for residue MPD A 304 |
Chain | Residue |
A | GLU80 |
A | ASN83 |
A | ASN87 |
C | SER62 |
C | GLN244 |
C | LYS247 |
C | LEU248 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue NA B 301 |
Chain | Residue |
B | ILE63 |
B | LEU64 |
B | GLY65 |
B | ALA68 |
B | HOH410 |
E | GLU86 |
site_id | AC6 |
Number of Residues | 12 |
Details | binding site for residue FEC B 302 |
Chain | Residue |
B | TYR147 |
B | MET149 |
B | HIS174 |
B | GLY178 |
B | GLN187 |
B | TRP200 |
B | LEU204 |
B | MET219 |
B | SER225 |
B | PHE231 |
B | VOV303 |
B | HOH402 |
site_id | AC7 |
Number of Residues | 17 |
Details | binding site for residue VOV B 303 |
Chain | Residue |
B | LEU110 |
B | SER111 |
B | ARG133 |
B | TYR147 |
B | MET149 |
B | TRP159 |
B | HIS174 |
B | GLY178 |
B | GLN187 |
B | TRP200 |
B | VAL202 |
B | LEU204 |
B | MET219 |
B | SER225 |
B | PHE231 |
B | FEC302 |
B | HOH402 |
site_id | AC8 |
Number of Residues | 5 |
Details | binding site for residue MPD B 304 |
Chain | Residue |
A | LEU248 |
B | GLU80 |
B | ASN83 |
B | ASN87 |
B | HOH401 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue NA A 305 |
Chain | Residue |
A | GLU86 |
C | ILE63 |
C | LEU64 |
C | GLY65 |
C | ALA68 |
C | HOH404 |
site_id | AD1 |
Number of Residues | 19 |
Details | binding site for residue FEC C 301 |
Chain | Residue |
C | SER111 |
C | TYR113 |
C | ARG133 |
C | TYR147 |
C | MET149 |
C | TRP159 |
C | HIS174 |
C | GLY178 |
C | ARG179 |
C | GLN187 |
C | TRP200 |
C | LEU204 |
C | MET219 |
C | SER225 |
C | PHE231 |
C | VOV302 |
C | HOH402 |
C | HOH408 |
C | HOH456 |
site_id | AD2 |
Number of Residues | 20 |
Details | binding site for residue VOV C 302 |
Chain | Residue |
C | LEU110 |
C | SER111 |
C | TYR113 |
C | TYR147 |
C | MET149 |
C | TRP159 |
C | HIS174 |
C | GLY178 |
C | ARG179 |
C | VAL185 |
C | GLN187 |
C | TRP200 |
C | LEU204 |
C | ILE215 |
C | MET219 |
C | SER225 |
C | PHE231 |
C | FEC301 |
C | HOH402 |
C | HOH408 |
site_id | AD3 |
Number of Residues | 6 |
Details | binding site for residue NA C 303 |
Chain | Residue |
C | GLU86 |
D | ILE63 |
D | LEU64 |
D | GLY65 |
D | ALA68 |
D | HOH432 |
site_id | AD4 |
Number of Residues | 25 |
Details | binding site for residue FEC D 301 |
Chain | Residue |
D | LEU110 |
D | SER111 |
D | TYR113 |
D | ARG133 |
D | TYR147 |
D | MET149 |
D | LYS151 |
D | TRP159 |
D | ILE171 |
D | HIS174 |
D | GLY178 |
D | ARG179 |
D | GLN187 |
D | TRP200 |
D | LEU204 |
D | ILE215 |
D | MET219 |
D | SER225 |
D | PHE231 |
D | VOV302 |
D | HOH402 |
D | HOH412 |
D | HOH465 |
D | HOH474 |
D | HOH481 |
site_id | AD5 |
Number of Residues | 23 |
Details | binding site for residue VOV D 302 |
Chain | Residue |
D | GLU109 |
D | SER111 |
D | TYR113 |
D | TYR147 |
D | MET149 |
D | LYS151 |
D | TRP159 |
D | HIS174 |
D | GLY178 |
D | ARG179 |
D | VAL185 |
D | GLN187 |
D | TRP200 |
D | LEU204 |
D | ILE215 |
D | MET219 |
D | SER225 |
D | PHE231 |
D | FEC301 |
D | HOH402 |
D | HOH412 |
D | HOH465 |
D | HOH481 |
site_id | AD6 |
Number of Residues | 3 |
Details | binding site for residue MPD D 303 |
Chain | Residue |
C | ASN87 |
D | GLN244 |
D | LYS247 |
site_id | AD7 |
Number of Residues | 6 |
Details | binding site for residue NA D 304 |
Chain | Residue |
D | GLU86 |
E | ILE63 |
E | LEU64 |
E | GLY65 |
E | ALA68 |
E | HOH412 |
site_id | AD8 |
Number of Residues | 16 |
Details | binding site for residue FEC E 301 |
Chain | Residue |
E | SER111 |
E | TYR113 |
E | TYR147 |
E | MET149 |
E | TRP159 |
E | HIS174 |
E | GLY178 |
E | ARG179 |
E | GLN187 |
E | TRP200 |
E | LEU204 |
E | MET219 |
E | SER225 |
E | VOV302 |
E | HOH401 |
E | HOH428 |
site_id | AD9 |
Number of Residues | 22 |
Details | binding site for residue VOV E 302 |
Chain | Residue |
E | LEU110 |
E | SER111 |
E | TYR113 |
E | ARG133 |
E | TYR147 |
E | MET149 |
E | TRP159 |
E | HIS174 |
E | GLY178 |
E | ARG179 |
E | VAL185 |
E | GLN187 |
E | TRP200 |
E | LEU204 |
E | ILE215 |
E | MET219 |
E | SER225 |
E | PHE231 |
E | FEC301 |
E | HOH401 |
E | HOH428 |
E | HOH464 |
site_id | AE1 |
Number of Residues | 5 |
Details | binding site for residue MPD E 303 |
Chain | Residue |
B | GLN244 |
E | GLU84 |
E | ASN87 |
E | HOH442 |
E | HOH452 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 5 |
Details | ACT_SITE: ACT_SITE => ECO:0000255|HAMAP-Rule:MF_01442, ECO:0000305|PubMed:31423350 |
Chain | Residue | Details |
A | TYR147 | |
B | TYR147 | |
C | TYR147 | |
D | TYR147 | |
E | TYR147 |
site_id | SWS_FT_FI2 |
Number of Residues | 20 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01442, ECO:0000269|PubMed:27758026, ECO:0007744|PDB:5LOQ |
Chain | Residue | Details |
B | TYR147 | |
B | GLN187 | |
B | SER225 | |
C | ARG133 | |
C | TYR147 | |
C | GLN187 | |
C | SER225 | |
D | ARG133 | |
D | TYR147 | |
D | GLN187 | |
D | SER225 | |
E | ARG133 | |
E | TYR147 | |
E | GLN187 | |
E | SER225 | |
A | TYR147 | |
A | GLN187 | |
A | SER225 | |
B | ARG133 | |
A | ARG133 |
site_id | SWS_FT_FI3 |
Number of Residues | 5 |
Details | BINDING: axial binding residue => ECO:0000255|HAMAP-Rule:MF_01442, ECO:0000269|PubMed:27758026, ECO:0007744|PDB:5LOQ |
Chain | Residue | Details |
A | HIS174 | |
B | HIS174 | |
C | HIS174 | |
D | HIS174 | |
E | HIS174 |