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6CIH

Crystal structure of a group II intron lariat in the post-catalytic state

Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue IRI A 703
ChainResidue
AA17
AG18
AG19

site_idAC2
Number of Residues8
Detailsbinding site for residue IRI A 704
ChainResidue
AU569
AC570
AC169
AU170
AA171
AG172
AC553
AC554

site_idAC3
Number of Residues2
Detailsbinding site for residue IRI A 705
ChainResidue
AA113
AG114

site_idAC4
Number of Residues7
Detailsbinding site for residue IRI A 706
ChainResidue
AA194
AG195
AG196
AC197
AG293
AU294
AHOH1245

site_idAC5
Number of Residues4
Detailsbinding site for residue IRI A 707
ChainResidue
AA519
AU520
AG521
AG522

site_idAC6
Number of Residues4
Detailsbinding site for residue IRI A 708
ChainResidue
AG431
AC491
AA492
AG493

site_idAC7
Number of Residues6
Detailsbinding site for residue IRI A 709
ChainResidue
AG10
AU14
AU15
AG337
AG338
AG339

site_idAC8
Number of Residues6
Detailsbinding site for residue IRI A 710
ChainResidue
AA6
AC7
AG421
AU496
AA577
AC578

site_idAC9
Number of Residues4
Detailsbinding site for residue IRI A 711
ChainResidue
AA165
AU166
AG167
AG168

site_idAD1
Number of Residues3
Detailsbinding site for residue IRI A 712
ChainResidue
AU183
AU301
AG302

site_idAD2
Number of Residues8
Detailsbinding site for residue IRI A 714
ChainResidue
AG120
AU121
AG147
AG148
AG149
AMG844
AHOH1057
AHOH1059

site_idAD3
Number of Residues5
Detailsbinding site for residue IRI A 715
ChainResidue
AG198
AU199
AC289
AG291
AC292

site_idAD4
Number of Residues4
Detailsbinding site for residue IRI A 716
ChainResidue
AG507
AU508
AU545
AG546

site_idAD5
Number of Residues5
Detailsbinding site for residue IRI A 717
ChainResidue
AG592
AG593
AU608
AC609
AHOH1213

site_idAD6
Number of Residues6
Detailsbinding site for residue IRI A 718
ChainResidue
AA381
AG382
AG383
AA384
AU401
AU402

site_idAD7
Number of Residues4
Detailsbinding site for residue IRI A 719
ChainResidue
AU367
AG368
AG369
AG370

site_idAD8
Number of Residues6
Detailsbinding site for residue IRI A 720
ChainResidue
AU347
AA348
AA349
AG414
AG415
AU416

site_idAD9
Number of Residues1
Detailsbinding site for residue IRI A 721
ChainResidue
AG346

site_idAE1
Number of Residues2
Detailsbinding site for residue IRI A 722
ChainResidue
AC342
AU343

site_idAE2
Number of Residues4
Detailsbinding site for residue IRI A 723
ChainResidue
AU78
AG98
AG99
AU100

site_idAE3
Number of Residues7
Detailsbinding site for residue IRI A 724
ChainResidue
AA182
AU183
AA184
AG304
AC305
AIRI725
AHOH1144

site_idAE4
Number of Residues6
Detailsbinding site for residue IRI A 725
ChainResidue
AC163
AU164
AC179
AG180
AA182
AIRI724

site_idAE5
Number of Residues3
Detailsbinding site for residue IRI A 726
ChainResidue
AU158
AG325
AHOH1120

site_idAE6
Number of Residues1
Detailsbinding site for residue IRI A 727
ChainResidue
AG37

site_idAE7
Number of Residues4
Detailsbinding site for residue IRI A 728
ChainResidue
AU443
AG444
AG445
AU446

site_idAE8
Number of Residues4
Detailsbinding site for residue IRI A 729
ChainResidue
AA438
AC441
AA458
AG459

site_idAE9
Number of Residues3
Detailsbinding site for residue IRI A 731
ChainResidue
AA371
AU461
AA462

site_idAF1
Number of Residues5
Detailsbinding site for residue IRI A 732
ChainResidue
AG546
AG589
AG590
AG591
AU616

site_idAF2
Number of Residues3
Detailsbinding site for residue IRI A 733
ChainResidue
AA378
AG379
AG380

site_idAF3
Number of Residues3
Detailsbinding site for residue IRI A 734
ChainResidue
AA384
AG385
AU386

site_idAF4
Number of Residues5
Detailsbinding site for residue IRI A 735
ChainResidue
AU218
AG220
AA226
AG227
AG228

site_idAF5
Number of Residues5
Detailsbinding site for residue IRI A 736
ChainResidue
AU262
AG263
AG264
AG265
AIRI737

site_idAF6
Number of Residues4
Detailsbinding site for residue IRI A 737
ChainResidue
AG265
AG266
AIRI736
AHOH1081

site_idAF7
Number of Residues4
Detailsbinding site for residue IRI A 738
ChainResidue
AG448
AU449
AC452
AG453

site_idAF8
Number of Residues5
Detailsbinding site for residue IRI A 739
ChainResidue
AG81
AU82
AG391
AC392
AA393

site_idAF9
Number of Residues4
Detailsbinding site for residue IRI A 740
ChainResidue
AU26
AG28
AG88
AU89

site_idAG1
Number of Residues6
Detailsbinding site for residue MG A 741
ChainResidue
AG550
AA551
AG552
AA574
AMG742
BC14

site_idAG2
Number of Residues6
Detailsbinding site for residue MG A 742
ChainResidue
AG552
AC572
AA574
AMG741
BA13
BC14

site_idAG3
Number of Residues3
Detailsbinding site for residue MG A 743
ChainResidue
AU2
AC4
AG5

site_idAG4
Number of Residues3
Detailsbinding site for residue MG A 744
ChainResidue
AA6
AC7
AA341

site_idAG5
Number of Residues2
Detailsbinding site for residue MG A 749
ChainResidue
AG524
AC527

site_idAG6
Number of Residues2
Detailsbinding site for residue MG A 756
ChainResidue
AU14
AU15

site_idAG7
Number of Residues4
Detailsbinding site for residue MG A 760
ChainResidue
AA303
AA303
AG304
AG304

site_idAG8
Number of Residues1
Detailsbinding site for residue MG A 764
ChainResidue
AG28

site_idAG9
Number of Residues1
Detailsbinding site for residue MG A 770
ChainResidue
AG350

site_idAH1
Number of Residues1
Detailsbinding site for residue MG A 778
ChainResidue
AMG805

site_idAH2
Number of Residues2
Detailsbinding site for residue MG A 779
ChainResidue
AG59
AG60

site_idAH3
Number of Residues1
Detailsbinding site for residue MG A 780
ChainResidue
AC173

site_idAH4
Number of Residues2
Detailsbinding site for residue MG A 783
ChainResidue
AC375
AU481

site_idAH5
Number of Residues1
Detailsbinding site for residue MG A 787
ChainResidue
AG380

site_idAH6
Number of Residues1
Detailsbinding site for residue MG A 797
ChainResidue
AA436

site_idAH7
Number of Residues4
Detailsbinding site for residue MG A 798
ChainResidue
AC435
AA436
AA437
AA438

site_idAH8
Number of Residues1
Detailsbinding site for residue MG A 801
ChainResidue
AA319

site_idAH9
Number of Residues1
Detailsbinding site for residue MG A 804
ChainResidue
AG486

site_idAI1
Number of Residues1
Detailsbinding site for residue MG A 805
ChainResidue
AMG778

site_idAI2
Number of Residues2
Detailsbinding site for residue MG A 807
ChainResidue
AA433
AG434

site_idAI3
Number of Residues1
Detailsbinding site for residue MG A 817
ChainResidue
AG548

site_idAI4
Number of Residues1
Detailsbinding site for residue MG A 819
ChainResidue
AU328

site_idAI5
Number of Residues1
Detailsbinding site for residue MG A 1016
ChainResidue
AA12

site_idAI6
Number of Residues3
Detailsbinding site for residue MG A 1018
ChainResidue
AA422
AC423
AU549

site_idAI7
Number of Residues2
Detailsbinding site for residue NA A 822
ChainResidue
AG421
AG550

site_idAI8
Number of Residues4
Detailsbinding site for residue NA A 827
ChainResidue
AU68
AA115
AA152
AG153

site_idAI9
Number of Residues1
Detailsbinding site for residue NA A 828
ChainResidue
AU447

site_idAJ1
Number of Residues2
Detailsbinding site for residue NA A 831
ChainResidue
AA594
AA595

site_idAJ2
Number of Residues2
Detailsbinding site for residue NA A 832
ChainResidue
AG63
AA64

site_idAJ3
Number of Residues1
Detailsbinding site for residue NA A 837
ChainResidue
AC374

site_idAJ4
Number of Residues7
Detailsbinding site for residue MG A 838
ChainResidue
AA340
AHOH1021
AHOH1022
AHOH1023
AHOH1024
AHOH1025
AHOH1026

site_idAJ5
Number of Residues6
Detailsbinding site for residue MG A 839
ChainResidue
AG430
AHOH1027
AHOH1028
AHOH1029
AHOH1030
AHOH1031

site_idAJ6
Number of Residues6
Detailsbinding site for residue MG A 840
ChainResidue
AC351
AHOH1033
AHOH1034
AHOH1035
AHOH1036
AHOH1037

site_idAJ7
Number of Residues6
Detailsbinding site for residue MG A 841
ChainResidue
AHOH1039
AHOH1040
AHOH1041
AHOH1042
AHOH1043
AHOH1044

site_idAJ8
Number of Residues7
Detailsbinding site for residue MG A 842
ChainResidue
AU260
AHOH1045
AHOH1046
AHOH1047
AHOH1048
AHOH1049
AHOH1050

site_idAJ9
Number of Residues6
Detailsbinding site for residue MG A 843
ChainResidue
AHOH1051
AHOH1052
AHOH1053
AHOH1054
AHOH1055
AHOH1056

site_idAK1
Number of Residues7
Detailsbinding site for residue MG A 844
ChainResidue
AIRI714
AHOH1057
AHOH1058
AHOH1059
AHOH1060
AHOH1061
AHOH1062

site_idAK2
Number of Residues6
Detailsbinding site for residue MG A 845
ChainResidue
AHOH1063
AHOH1064
AHOH1065
AHOH1066
AHOH1067
AHOH1068

site_idAK3
Number of Residues6
Detailsbinding site for residue MG A 846
ChainResidue
AHOH1069
AHOH1070
AHOH1071
AHOH1072
AHOH1073
AHOH1074

site_idAK4
Number of Residues6
Detailsbinding site for residue MG A 847
ChainResidue
AG103
AHOH1075
AHOH1076
AHOH1077
AHOH1078
AHOH1079

site_idAK5
Number of Residues6
Detailsbinding site for residue MG A 848
ChainResidue
AHOH1081
AHOH1082
AHOH1083
AHOH1084
AHOH1085
AHOH1086

site_idAK6
Number of Residues6
Detailsbinding site for residue MG A 849
ChainResidue
AC553
AG571
AHOH1087
AHOH1088
AHOH1089
AHOH1090

site_idAK7
Number of Residues6
Detailsbinding site for residue MG A 850
ChainResidue
AG106
AC107
AHOH1093
AHOH1094
AHOH1095
AHOH1096

site_idAK8
Number of Residues6
Detailsbinding site for residue MG A 851
ChainResidue
AHOH1099
AHOH1100
AHOH1101
AHOH1102
AHOH1103
AHOH1104

site_idAK9
Number of Residues6
Detailsbinding site for residue MG A 852
ChainResidue
AHOH1105
AHOH1106
AHOH1107
AHOH1108
AHOH1109
AHOH1110

site_idAL1
Number of Residues7
Detailsbinding site for residue MG A 853
ChainResidue
AC606
AHOH1111
AHOH1112
AHOH1113
AHOH1114
AHOH1115
AHOH1116

site_idAL2
Number of Residues7
Detailsbinding site for residue MG A 854
ChainResidue
AG317
AG325
AHOH1117
AHOH1118
AHOH1119
AHOH1120
AHOH1121

site_idAL3
Number of Residues7
Detailsbinding site for residue MG A 855
ChainResidue
AG187
AHOH1123
AHOH1124
AHOH1125
AHOH1126
AHOH1127
AHOH1128

site_idAL4
Number of Residues6
Detailsbinding site for residue MG A 856
ChainResidue
AHOH1129
AHOH1130
AHOH1131
AHOH1132
AHOH1133
AHOH1134

site_idAL5
Number of Residues6
Detailsbinding site for residue MG A 857
ChainResidue
AHOH1135
AHOH1136
AHOH1137
AHOH1138
AHOH1139
AHOH1140

site_idAL6
Number of Residues8
Detailsbinding site for residue MG A 858
ChainResidue
AG180
AA184
AHOH1141
AHOH1142
AHOH1143
AHOH1144
AHOH1145
AHOH1146

site_idAL7
Number of Residues6
Detailsbinding site for residue MG A 859
ChainResidue
AA429
AG430
AHOH1147
AHOH1148
AHOH1149
AHOH1150

site_idAL8
Number of Residues7
Detailsbinding site for residue MG A 860
ChainResidue
AG482
AHOH1153
AHOH1154
AHOH1155
AHOH1156
AHOH1157
AHOH1158

site_idAL9
Number of Residues7
Detailsbinding site for residue MG A 861
ChainResidue
AU581
AHOH1159
AHOH1160
AHOH1161
AHOH1162
AHOH1163
AHOH1164

site_idAM1
Number of Residues5
Detailsbinding site for residue MG A 862
ChainResidue
AU32
AHOH1165
AHOH1166
AHOH1167
AHOH1168

site_idAM2
Number of Residues6
Detailsbinding site for residue MG A 863
ChainResidue
AHOH1171
AHOH1172
AHOH1173
AHOH1174
AHOH1175
AHOH1176

site_idAM3
Number of Residues6
Detailsbinding site for residue MG A 864
ChainResidue
AHOH1177
AHOH1178
AHOH1179
AHOH1180
AHOH1181
AHOH1182

site_idAM4
Number of Residues6
Detailsbinding site for residue MG A 865
ChainResidue
AHOH1183
AHOH1184
AHOH1185
AHOH1186
AHOH1187
AHOH1188

site_idAM5
Number of Residues6
Detailsbinding site for residue MG A 866
ChainResidue
AHOH1189
AHOH1190
AHOH1191
AHOH1192
AHOH1193
AHOH1194

site_idAM6
Number of Residues6
Detailsbinding site for residue MG A 867
ChainResidue
AHOH1195
AHOH1196
AHOH1197
AHOH1198
AHOH1199
AHOH1200

site_idAM7
Number of Residues6
Detailsbinding site for residue MG A 868
ChainResidue
AHOH1201
AHOH1202
AHOH1203
AHOH1204
AHOH1205
AHOH1206

site_idAM8
Number of Residues6
Detailsbinding site for residue MG A 869
ChainResidue
AHOH1207
AHOH1208
AHOH1209
AHOH1210
AHOH1211
AHOH1212

site_idAM9
Number of Residues6
Detailsbinding site for residue MG A 870
ChainResidue
AHOH1213
AHOH1214
AHOH1215
AHOH1216
AHOH1217
AHOH1218

site_idAN1
Number of Residues6
Detailsbinding site for residue MG A 871
ChainResidue
AHOH1219
AHOH1220
AHOH1221
AHOH1222
AHOH1223
AHOH1224

site_idAN2
Number of Residues6
Detailsbinding site for residue MG A 872
ChainResidue
AHOH1225
AHOH1226
AHOH1227
AHOH1228
AHOH1229
AHOH1230

site_idAN3
Number of Residues6
Detailsbinding site for residue MG A 873
ChainResidue
AHOH1231
AHOH1232
AHOH1233
AHOH1234
AHOH1235
AHOH1236

site_idAN4
Number of Residues7
Detailsbinding site for residue MG A 874
ChainResidue
AG33
AHOH1237
AHOH1238
AHOH1239
AHOH1240
AHOH1241
AHOH1242

site_idAN5
Number of Residues7
Detailsbinding site for residue MG A 875
ChainResidue
AG195
AHOH1243
AHOH1244
AHOH1245
AHOH1246
AHOH1247
AHOH1248

site_idAN6
Number of Residues6
Detailsbinding site for residue MG A 876
ChainResidue
AHOH1249
AHOH1250
AHOH1251
AHOH1252
AHOH1253
AHOH1254

site_idAN7
Number of Residues6
Detailsbinding site for residue MG A 877
ChainResidue
AHOH1255
AHOH1256
AHOH1257
AHOH1258
AHOH1259
AHOH1260

site_idAN8
Number of Residues6
Detailsbinding site for residue MG A 878
ChainResidue
AHOH1261
AHOH1262
AHOH1263
AHOH1264
AHOH1265
AHOH1266

site_idAN9
Number of Residues6
Detailsbinding site for residue MG A 879
ChainResidue
AHOH1267
AHOH1268
AHOH1269
AHOH1270
AHOH1271
AHOH1272

site_idAO1
Number of Residues5
Detailsbinding site for residue IRI A 880
ChainResidue
AG33
AA35
AHOH1167
AHOH1237
AHOH1240

site_idAO2
Number of Residues4
Detailsbinding site for residue IRI A 881
ChainResidue
AC179
AG180
AC523
AG524

site_idAO3
Number of Residues2
Detailsbinding site for residue IRI A 882
ChainResidue
AG22
AG23

site_idAO4
Number of Residues4
Detailsbinding site for residue IRI A 883
ChainResidue
AA211
AA212
AG231
AA232

site_idAO5
Number of Residues3
Detailsbinding site for residue IRI A 884
ChainResidue
AG238
AU239
AC285

site_idAO6
Number of Residues1
Detailsbinding site for residue MG A 885
ChainResidue
AA458

site_idAO7
Number of Residues1
Detailsbinding site for residue MG A 886
ChainResidue
AU407

site_idAO8
Number of Residues1
Detailsbinding site for residue MG A 887
ChainResidue
AC362

site_idAO9
Number of Residues2
Detailsbinding site for residue MG A 888
ChainResidue
AU347
AA417

site_idAP1
Number of Residues1
Detailsbinding site for residue MG A 890
ChainResidue
AU499

site_idAP2
Number of Residues1
Detailsbinding site for residue MG A 891
ChainResidue
AC537

site_idAP3
Number of Residues3
Detailsbinding site for residue MG B 102
ChainResidue
AC254
BU5
BA6

site_idAP4
Number of Residues6
Detailsbinding site for residue MG B 103
ChainResidue
BHOH104
BHOH105
BHOH106
BHOH107
BHOH108
BHOH109

221051

PDB entries from 2024-06-12

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