6B6X
Crystal structure of Desulfovibrio vulgaris carbon monoxide dehydrogenase, dithionite-reduced (protein batch 2), canonical C-cluster
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0004601 | molecular_function | peroxidase activity |
A | 0006091 | biological_process | generation of precursor metabolites and energy |
A | 0016151 | molecular_function | nickel cation binding |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0018492 | molecular_function | carbon-monoxide dehydrogenase (acceptor) activity |
A | 0042542 | biological_process | response to hydrogen peroxide |
A | 0043885 | molecular_function | carbon-monoxide dehydrogenase (ferredoxin) activity |
A | 0046872 | molecular_function | metal ion binding |
A | 0050418 | molecular_function | hydroxylamine reductase activity |
A | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
A | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
A | 0098869 | biological_process | cellular oxidant detoxification |
B | 0003824 | molecular_function | catalytic activity |
B | 0004601 | molecular_function | peroxidase activity |
B | 0006091 | biological_process | generation of precursor metabolites and energy |
B | 0016151 | molecular_function | nickel cation binding |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0018492 | molecular_function | carbon-monoxide dehydrogenase (acceptor) activity |
B | 0042542 | biological_process | response to hydrogen peroxide |
B | 0043885 | molecular_function | carbon-monoxide dehydrogenase (ferredoxin) activity |
B | 0046872 | molecular_function | metal ion binding |
B | 0050418 | molecular_function | hydroxylamine reductase activity |
B | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
B | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
B | 0098869 | biological_process | cellular oxidant detoxification |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue SF4 A 701 |
Chain | Residue |
A | CYS51 |
A | CYS54 |
A | CYS59 |
A | CYS74 |
A | ARG84 |
A | MET203 |
site_id | AC2 |
Number of Residues | 13 |
Details | binding site for residue XCC A 702 |
Chain | Residue |
A | HIS319 |
A | CYS340 |
A | GLY447 |
A | CYS448 |
A | CYS478 |
A | CYS519 |
A | TYR553 |
A | SER554 |
A | LYS556 |
A | HOH884 |
A | HIS266 |
A | CYS301 |
A | CYS302 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue GOL A 703 |
Chain | Residue |
A | ASP79 |
A | GLY581 |
A | SER582 |
A | GLU583 |
A | ASN584 |
A | HOH831 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue MG A 704 |
Chain | Residue |
A | HOH895 |
A | HOH919 |
A | HOH953 |
A | HOH1090 |
A | HOH1183 |
site_id | AC5 |
Number of Residues | 5 |
Details | binding site for residue MG A 705 |
Chain | Residue |
A | HOH815 |
A | HOH1083 |
A | HOH1227 |
B | HOH839 |
B | HOH1212 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue CL A 706 |
Chain | Residue |
A | ARG64 |
A | LYS65 |
B | ALA144 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue FES B 701 |
Chain | Residue |
A | CYS42 |
A | CYS45 |
A | THR50 |
B | CYS42 |
B | CYS45 |
B | THR50 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue SF4 B 702 |
Chain | Residue |
B | CYS51 |
B | CYS54 |
B | CYS59 |
B | CYS74 |
B | ARG84 |
B | MET203 |
site_id | AC9 |
Number of Residues | 13 |
Details | binding site for residue XCC B 703 |
Chain | Residue |
B | HIS266 |
B | CYS301 |
B | CYS302 |
B | HIS319 |
B | CYS340 |
B | GLY447 |
B | CYS448 |
B | CYS478 |
B | CYS519 |
B | TYR553 |
B | SER554 |
B | LYS556 |
B | HOH820 |
site_id | AD1 |
Number of Residues | 8 |
Details | binding site for residue GOL B 704 |
Chain | Residue |
A | CYS42 |
A | PHE44 |
A | ARG60 |
B | CYS42 |
B | PHE44 |
B | ARG60 |
B | ASP138 |
B | HOH951 |
site_id | AD2 |
Number of Residues | 1 |
Details | binding site for residue GOL B 705 |
Chain | Residue |
B | GLY135 |
site_id | AD3 |
Number of Residues | 7 |
Details | binding site for residue GOL B 706 |
Chain | Residue |
B | ALA78 |
B | ASP79 |
B | GLY581 |
B | SER582 |
B | GLU583 |
B | ASN584 |
B | HOH993 |
site_id | AD4 |
Number of Residues | 7 |
Details | binding site for residue GOL B 707 |
Chain | Residue |
A | PRO361 |
B | GLY184 |
B | ARG200 |
B | SER211 |
B | ARG218 |
B | HOH839 |
B | HOH877 |
site_id | AD5 |
Number of Residues | 10 |
Details | binding site for residue GOL B 708 |
Chain | Residue |
B | ASP103 |
B | TYR338 |
B | THR359 |
B | SER360 |
B | PRO361 |
B | VAL373 |
B | HOH817 |
B | HOH826 |
B | HOH969 |
B | HOH1041 |
site_id | AD6 |
Number of Residues | 6 |
Details | binding site for residue MG B 709 |
Chain | Residue |
B | HOH1156 |
B | HOH1203 |
B | HOH1275 |
B | HOH864 |
B | HOH904 |
B | HOH944 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue MG B 710 |
Chain | Residue |
A | HOH1175 |
A | HOH1212 |
B | HOH827 |
B | HOH867 |
site_id | AD8 |
Number of Residues | 4 |
Details | binding site for residue CL B 711 |
Chain | Residue |
B | ARG163 |
B | ASN164 |
B | ALA165 |
B | HOH1154 |
site_id | AD9 |
Number of Residues | 3 |
Details | binding site for residue CL B 712 |
Chain | Residue |
B | GLN594 |
B | HIS617 |
B | ARG621 |