5Z5C
Crystal structure of hydrogen sulfide-producing enzyme (Fn1055) from Fusobacterium nucleatum: lysine-dimethylated form
Replaces: 5B54Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004124 | molecular_function | cysteine synthase activity |
A | 0005737 | cellular_component | cytoplasm |
A | 0006534 | biological_process | cysteine metabolic process |
A | 0006535 | biological_process | cysteine biosynthetic process from serine |
A | 0009069 | biological_process | serine family amino acid metabolic process |
A | 0016740 | molecular_function | transferase activity |
A | 0044272 | biological_process | sulfur compound biosynthetic process |
A | 0080146 | molecular_function | L-cysteine desulfhydrase activity |
B | 0004124 | molecular_function | cysteine synthase activity |
B | 0005737 | cellular_component | cytoplasm |
B | 0006534 | biological_process | cysteine metabolic process |
B | 0006535 | biological_process | cysteine biosynthetic process from serine |
B | 0009069 | biological_process | serine family amino acid metabolic process |
B | 0016740 | molecular_function | transferase activity |
B | 0044272 | biological_process | sulfur compound biosynthetic process |
B | 0080146 | molecular_function | L-cysteine desulfhydrase activity |
C | 0004124 | molecular_function | cysteine synthase activity |
C | 0005737 | cellular_component | cytoplasm |
C | 0006534 | biological_process | cysteine metabolic process |
C | 0006535 | biological_process | cysteine biosynthetic process from serine |
C | 0009069 | biological_process | serine family amino acid metabolic process |
C | 0016740 | molecular_function | transferase activity |
C | 0044272 | biological_process | sulfur compound biosynthetic process |
C | 0080146 | molecular_function | L-cysteine desulfhydrase activity |
D | 0004124 | molecular_function | cysteine synthase activity |
D | 0005737 | cellular_component | cytoplasm |
D | 0006534 | biological_process | cysteine metabolic process |
D | 0006535 | biological_process | cysteine biosynthetic process from serine |
D | 0009069 | biological_process | serine family amino acid metabolic process |
D | 0016740 | molecular_function | transferase activity |
D | 0044272 | biological_process | sulfur compound biosynthetic process |
D | 0080146 | molecular_function | L-cysteine desulfhydrase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 19 |
Details | binding site for residue PLP A 401 |
Chain | Residue |
A | LYS46 |
A | GLU228 |
A | GLY229 |
A | ILE230 |
A | SER272 |
A | PRO298 |
A | ASP299 |
A | HOH516 |
A | HOH548 |
A | HOH552 |
A | HOH558 |
A | ASN76 |
A | GLY182 |
A | VAL183 |
A | GLY184 |
A | THR185 |
A | GLY186 |
A | GLY187 |
A | THR188 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue CL A 402 |
Chain | Residue |
A | LYS46 |
A | THR73 |
A | SER74 |
A | THR77 |
A | GLN147 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue CL C 402 |
Chain | Residue |
C | LYS46 |
C | THR73 |
C | SER74 |
C | THR77 |
C | GLN147 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue CL D 402 |
Chain | Residue |
D | LYS46 |
D | THR73 |
D | SER74 |
D | THR77 |
D | GLN147 |
site_id | AC5 |
Number of Residues | 24 |
Details | binding site for Di-peptide PLP B 401 and LYS B 46 |
Chain | Residue |
B | SER44 |
B | ILE45 |
B | ASP47 |
B | ARG48 |
B | MET49 |
B | ALA50 |
B | ASN76 |
B | THR77 |
B | ALA80 |
B | VAL183 |
B | GLY184 |
B | THR185 |
B | GLY186 |
B | GLY187 |
B | THR188 |
B | GLY229 |
B | ILE230 |
B | SER272 |
B | PRO298 |
B | ASP299 |
B | HOH501 |
B | HOH530 |
B | HOH540 |
B | HOH553 |
site_id | AC6 |
Number of Residues | 27 |
Details | binding site for Di-peptide PLP C 401 and LYS C 46 |
Chain | Residue |
C | SER44 |
C | ILE45 |
C | ASP47 |
C | ARG48 |
C | MET49 |
C | ALA50 |
C | ASN76 |
C | THR77 |
C | GLY182 |
C | VAL183 |
C | GLY184 |
C | THR185 |
C | GLY186 |
C | GLY187 |
C | THR188 |
C | GLU228 |
C | GLY229 |
C | ILE230 |
C | SER272 |
C | PRO298 |
C | ASP299 |
C | TYR304 |
C | CL402 |
C | HOH516 |
C | HOH538 |
C | HOH553 |
C | HOH564 |
site_id | AC7 |
Number of Residues | 26 |
Details | binding site for Di-peptide PLP D 401 and LYS D 46 |
Chain | Residue |
D | THR188 |
D | GLY229 |
D | ILE230 |
D | SER272 |
D | PRO298 |
D | ASP299 |
D | TYR304 |
D | CL402 |
D | HOH506 |
D | HOH513 |
D | HOH542 |
D | HOH569 |
D | SER44 |
D | ILE45 |
D | ASP47 |
D | ARG48 |
D | MET49 |
D | ALA50 |
D | ASN76 |
D | THR77 |
D | GLY182 |
D | VAL183 |
D | GLY184 |
D | THR185 |
D | GLY186 |
D | GLY187 |