5YRV
Diol dehydratase, AdoCbl/1,2-propanediol, anaerobically-prepared crystal
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0016829 | molecular_function | lyase activity |
| A | 0016836 | molecular_function | hydro-lyase activity |
| A | 0031419 | molecular_function | cobalamin binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050215 | molecular_function | propanediol dehydratase activity |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0016829 | molecular_function | lyase activity |
| D | 0016836 | molecular_function | hydro-lyase activity |
| D | 0031419 | molecular_function | cobalamin binding |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0050215 | molecular_function | propanediol dehydratase activity |
| G | 0003824 | molecular_function | catalytic activity |
| G | 0016829 | molecular_function | lyase activity |
| G | 0016836 | molecular_function | hydro-lyase activity |
| G | 0031419 | molecular_function | cobalamin binding |
| G | 0046872 | molecular_function | metal ion binding |
| G | 0050215 | molecular_function | propanediol dehydratase activity |
| J | 0003824 | molecular_function | catalytic activity |
| J | 0016829 | molecular_function | lyase activity |
| J | 0016836 | molecular_function | hydro-lyase activity |
| J | 0031419 | molecular_function | cobalamin binding |
| J | 0046872 | molecular_function | metal ion binding |
| J | 0050215 | molecular_function | propanediol dehydratase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue CA A 601 |
| Chain | Residue |
| A | GLN141 |
| A | GLU170 |
| A | GLU221 |
| A | GLN296 |
| A | SER362 |
| A | PGO604 |
| site_id | AC2 |
| Number of Residues | 7 |
| Details | binding site for residue K A 602 |
| Chain | Residue |
| A | GLU280 |
| A | CYS283 |
| A | HOH761 |
| A | HOH827 |
| A | GLY261 |
| A | SER264 |
| A | GLU265 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue K A 603 |
| Chain | Residue |
| A | LEU203 |
| A | GLU205 |
| A | GLU208 |
| A | THR222 |
| B | B121601 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | binding site for residue PGO A 604 |
| Chain | Residue |
| A | HIS143 |
| A | GLU170 |
| A | GLU221 |
| A | THR222 |
| A | GLN296 |
| A | ASP335 |
| A | GLN336 |
| A | SER362 |
| A | CA601 |
| A | 5AD605 |
| site_id | AC5 |
| Number of Residues | 13 |
| Details | binding site for residue 5AD A 605 |
| Chain | Residue |
| A | THR222 |
| A | SER224 |
| A | VAL225 |
| A | THR259 |
| A | SER260 |
| A | GLY261 |
| A | SER264 |
| A | SER299 |
| A | VAL300 |
| A | SER301 |
| A | PGO604 |
| A | HOH827 |
| B | B121601 |
| site_id | AC6 |
| Number of Residues | 1 |
| Details | binding site for residue CL A 606 |
| site_id | AC7 |
| Number of Residues | 4 |
| Details | binding site for residue CL A 607 |
| Chain | Residue |
| A | GLU22 |
| A | HOH1167 |
| D | HOH780 |
| D | HOH933 |
| site_id | AC8 |
| Number of Residues | 36 |
| Details | binding site for residue B12 B 1601 |
| Chain | Residue |
| A | THR172 |
| A | VAL173 |
| A | ALA174 |
| A | SER202 |
| A | GLU205 |
| A | THR222 |
| A | ASP234 |
| A | GLN267 |
| A | MET268 |
| A | GLN336 |
| A | MET373 |
| A | PHE374 |
| A | K603 |
| A | 5AD605 |
| A | HOH840 |
| A | HOH963 |
| B | ASP112 |
| B | VAL113 |
| B | LYS135 |
| B | THR137 |
| B | LEU148 |
| B | ASN150 |
| B | LEU153 |
| B | PRO155 |
| B | GLN156 |
| B | ALA157 |
| B | PRO158 |
| B | ARG193 |
| B | TYR196 |
| B | SER200 |
| B | HOH1724 |
| B | HOH1729 |
| B | HOH1751 |
| B | HOH1759 |
| B | HOH1790 |
| B | HOH1821 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue CL C 201 |
| Chain | Residue |
| A | LYS288 |
| C | ASP99 |
| C | ARG100 |
| C | HOH386 |
| C | HOH412 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue CA D 601 |
| Chain | Residue |
| D | GLN141 |
| D | GLU170 |
| D | GLU221 |
| D | GLN296 |
| D | SER362 |
| D | PGO604 |
| site_id | AD2 |
| Number of Residues | 7 |
| Details | binding site for residue K D 602 |
| Chain | Residue |
| D | HOH844 |
| D | GLY261 |
| D | SER264 |
| D | GLU265 |
| D | GLU280 |
| D | CYS283 |
| D | HOH799 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue K D 603 |
| Chain | Residue |
| D | LEU203 |
| D | GLU205 |
| D | GLU208 |
| D | THR222 |
| E | B121601 |
| site_id | AD4 |
| Number of Residues | 11 |
| Details | binding site for residue PGO D 604 |
| Chain | Residue |
| D | HIS143 |
| D | GLU170 |
| D | GLU221 |
| D | THR222 |
| D | GLN296 |
| D | VAL300 |
| D | ASP335 |
| D | GLN336 |
| D | SER362 |
| D | CA601 |
| D | 5AD605 |
| site_id | AD5 |
| Number of Residues | 14 |
| Details | binding site for residue 5AD D 605 |
| Chain | Residue |
| D | THR222 |
| D | SER224 |
| D | VAL225 |
| D | THR259 |
| D | SER260 |
| D | GLY261 |
| D | SER264 |
| D | SER299 |
| D | VAL300 |
| D | SER301 |
| D | PHE374 |
| D | PGO604 |
| D | HOH799 |
| E | B121601 |
| site_id | AD6 |
| Number of Residues | 3 |
| Details | binding site for residue CL D 606 |
| Chain | Residue |
| A | HOH741 |
| A | HOH1033 |
| D | GLU22 |
| site_id | AD7 |
| Number of Residues | 2 |
| Details | binding site for residue CL D 607 |
| Chain | Residue |
| D | ARG532 |
| D | HOH1034 |
| site_id | AD8 |
| Number of Residues | 35 |
| Details | binding site for residue B12 E 1601 |
| Chain | Residue |
| D | THR172 |
| D | VAL173 |
| D | ALA174 |
| D | SER202 |
| D | GLU205 |
| D | THR222 |
| D | ASP234 |
| D | GLN267 |
| D | MET268 |
| D | GLN336 |
| D | MET373 |
| D | PHE374 |
| D | K603 |
| D | 5AD605 |
| D | HOH870 |
| D | HOH911 |
| E | ASP112 |
| E | LYS135 |
| E | THR137 |
| E | LEU148 |
| E | ASN150 |
| E | LEU153 |
| E | PRO155 |
| E | GLN156 |
| E | ALA157 |
| E | PRO158 |
| E | ARG193 |
| E | TYR196 |
| E | SER200 |
| E | HOH1718 |
| E | HOH1719 |
| E | HOH1721 |
| E | HOH1739 |
| E | HOH1746 |
| E | HOH1797 |
| site_id | AD9 |
| Number of Residues | 5 |
| Details | binding site for residue CL F 201 |
| Chain | Residue |
| D | LYS288 |
| D | HOH1043 |
| F | ASP99 |
| F | ARG100 |
| F | HOH363 |
| site_id | AE1 |
| Number of Residues | 6 |
| Details | binding site for residue CA G 601 |
| Chain | Residue |
| G | GLN141 |
| G | GLU170 |
| G | GLU221 |
| G | GLN296 |
| G | SER362 |
| G | PGO604 |
| site_id | AE2 |
| Number of Residues | 7 |
| Details | binding site for residue K G 602 |
| Chain | Residue |
| G | GLY261 |
| G | SER264 |
| G | GLU265 |
| G | GLU280 |
| G | CYS283 |
| G | HOH802 |
| G | HOH870 |
| site_id | AE3 |
| Number of Residues | 5 |
| Details | binding site for residue K G 603 |
| Chain | Residue |
| G | LEU203 |
| G | GLU205 |
| G | GLU208 |
| G | THR222 |
| H | B121601 |
| site_id | AE4 |
| Number of Residues | 10 |
| Details | binding site for residue PGO G 604 |
| Chain | Residue |
| G | HIS143 |
| G | GLU170 |
| G | GLU221 |
| G | THR222 |
| G | GLN296 |
| G | ASP335 |
| G | GLN336 |
| G | SER362 |
| G | CA601 |
| G | 5AD605 |
| site_id | AE5 |
| Number of Residues | 14 |
| Details | binding site for residue 5AD G 605 |
| Chain | Residue |
| G | THR222 |
| G | SER224 |
| G | VAL225 |
| G | THR259 |
| G | SER260 |
| G | GLY261 |
| G | SER264 |
| G | SER299 |
| G | VAL300 |
| G | SER301 |
| G | PHE374 |
| G | PGO604 |
| G | HOH870 |
| H | B121601 |
| site_id | AE6 |
| Number of Residues | 2 |
| Details | binding site for residue CL G 606 |
| Chain | Residue |
| G | GLU22 |
| J | HOH830 |
| site_id | AE7 |
| Number of Residues | 1 |
| Details | binding site for residue CL G 607 |
| site_id | AE8 |
| Number of Residues | 35 |
| Details | binding site for residue B12 H 1601 |
| Chain | Residue |
| G | THR172 |
| G | VAL173 |
| G | ALA174 |
| G | SER202 |
| G | GLU205 |
| G | THR222 |
| G | ASP234 |
| G | GLN267 |
| G | MET268 |
| G | GLN336 |
| G | MET373 |
| G | PHE374 |
| G | K603 |
| G | 5AD605 |
| G | HOH825 |
| H | ASP112 |
| H | LYS135 |
| H | THR137 |
| H | LEU148 |
| H | ASN150 |
| H | LEU153 |
| H | PRO155 |
| H | GLN156 |
| H | ALA157 |
| H | ARG193 |
| H | TYR196 |
| H | SER200 |
| H | HOH1716 |
| H | HOH1722 |
| H | HOH1750 |
| H | HOH1753 |
| H | HOH1768 |
| H | HOH1777 |
| H | HOH1778 |
| H | HOH1814 |
| site_id | AE9 |
| Number of Residues | 2 |
| Details | binding site for residue CL I 201 |
| Chain | Residue |
| I | ASP99 |
| I | ARG100 |
| site_id | AF1 |
| Number of Residues | 7 |
| Details | binding site for residue CA J 601 |
| Chain | Residue |
| J | GLN141 |
| J | GLU170 |
| J | GLU221 |
| J | GLN296 |
| J | SER362 |
| J | HOH727 |
| J | HOH880 |
| site_id | AF2 |
| Number of Residues | 7 |
| Details | binding site for residue K J 602 |
| Chain | Residue |
| J | GLY261 |
| J | SER264 |
| J | GLU265 |
| J | GLU280 |
| J | CYS283 |
| J | HOH743 |
| J | HOH764 |
| site_id | AF3 |
| Number of Residues | 5 |
| Details | binding site for residue K J 603 |
| Chain | Residue |
| J | LEU203 |
| J | GLU205 |
| J | GLU208 |
| J | THR222 |
| K | B121601 |
| site_id | AF4 |
| Number of Residues | 13 |
| Details | binding site for residue 5AD J 604 |
| Chain | Residue |
| J | THR222 |
| J | SER224 |
| J | VAL225 |
| J | THR259 |
| J | SER260 |
| J | GLY261 |
| J | SER264 |
| J | SER299 |
| J | VAL300 |
| J | SER301 |
| J | PHE374 |
| J | HOH764 |
| K | B121601 |
| site_id | AF5 |
| Number of Residues | 3 |
| Details | binding site for residue CL J 605 |
| Chain | Residue |
| G | HOH766 |
| G | HOH995 |
| J | GLU22 |
| site_id | AF6 |
| Number of Residues | 3 |
| Details | binding site for residue CL J 606 |
| Chain | Residue |
| G | HOH815 |
| J | ARG532 |
| J | HOH1023 |
| site_id | AF7 |
| Number of Residues | 36 |
| Details | binding site for residue B12 K 1601 |
| Chain | Residue |
| J | THR172 |
| J | VAL173 |
| J | ALA174 |
| J | SER202 |
| J | GLU205 |
| J | THR222 |
| J | ASP234 |
| J | GLN267 |
| J | MET268 |
| J | GLN336 |
| J | MET373 |
| J | PHE374 |
| J | K603 |
| J | 5AD604 |
| J | HOH928 |
| K | ASP112 |
| K | VAL113 |
| K | LYS135 |
| K | THR137 |
| K | LEU148 |
| K | ASN150 |
| K | LEU153 |
| K | PRO155 |
| K | GLN156 |
| K | ALA157 |
| K | PRO158 |
| K | ARG193 |
| K | TYR196 |
| K | SER200 |
| K | HOH1712 |
| K | HOH1725 |
| K | HOH1743 |
| K | HOH1752 |
| K | HOH1767 |
| K | HOH1770 |
| K | HOH1814 |
| site_id | AF8 |
| Number of Residues | 3 |
| Details | binding site for residue CL L 201 |
| Chain | Residue |
| L | ASP99 |
| L | ARG100 |
| L | HOH380 |
