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5YP4

Crystal structure of dipeptidyl peptidase IV (DPP IV) with Lys-Pro from Pseudoxanthomonas mexicana WO24

Functional Information from GO Data
ChainGOidnamespacecontents
A0006508biological_processproteolysis
A0008236molecular_functionserine-type peptidase activity
B0006508biological_processproteolysis
B0008236molecular_functionserine-type peptidase activity
C0006508biological_processproteolysis
C0008236molecular_functionserine-type peptidase activity
D0006508biological_processproteolysis
D0008236molecular_functionserine-type peptidase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue GOL A 803
ChainResidue
AARG106
AILE107
AALA108
AALA109
AHOH904
AHOH1281

site_idAC2
Number of Residues7
Detailsbinding site for residue GOL A 804
ChainResidue
AGLN105
AASP115
AHOH1061
AHOH1243
ALYS43
AGLU98
AARG101

site_idAC3
Number of Residues8
Detailsbinding site for residue GOL A 805
ChainResidue
ATHR333
ASER334
ATHR335
AARG358
AHOH1072
AHOH1214
AHOH1346
BTHR333

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL A 806
ChainResidue
ATHR450
AARG484
AHOH1320
AHOH1338

site_idAC5
Number of Residues3
Detailsbinding site for residue GOL B 803
ChainResidue
BTHR450
BARG484
BHOH1292

site_idAC6
Number of Residues10
Detailsbinding site for residue GOL B 804
ChainResidue
ALYS312
ATHR333
ASER334
ATHR335
AHOH1198
BTHR331
BTHR333
BARG358
BHOH1139
BHOH1175

site_idAC7
Number of Residues5
Detailsbinding site for residue GOL B 805
ChainResidue
BALA498
BARG564
BVAL584
BASP587
BHOH1186

site_idAC8
Number of Residues7
Detailsbinding site for residue GOL B 806
ChainResidue
BGLY405
BALA406
BPRO503
BHIS505
BARG569
BHOH948
BHOH995

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL B 807
ChainResidue
BARG106
BILE107
BALA108
BALA109
BARG724
BHOH915

site_idAD1
Number of Residues6
Detailsbinding site for residue GOL B 808
ChainResidue
BARG293
BVAL294
BASP295
BASN342
BHOH1183
BHOH1200

site_idAD2
Number of Residues5
Detailsbinding site for residue GOL B 809
ChainResidue
BARG106
BTYR527
BLYS801
BPRO802
BHOH945

site_idAD3
Number of Residues5
Detailsbinding site for residue GOL B 810
ChainResidue
BASP449
BTHR490
BALA491
BTYR492
BARG537

site_idAD4
Number of Residues11
Detailsbinding site for residue GOL B 811
ChainResidue
BGLU97
BARG101
BVAL201
BALA202
BASP207
BHIS213
BTHR214
BHOH916
BHOH1000
BHOH1114
BHOH1180

site_idAD5
Number of Residues8
Detailsbinding site for residue GOL B 812
ChainResidue
BGLU98
BARG101
BGLN105
BASP115
BHOH939
BHOH1057
BHOH1085
BHOH1157

site_idAD6
Number of Residues9
Detailsbinding site for residue GOL C 803
ChainResidue
CHOH1389
CARG542
CSER543
CASP544
CTRP612
CARG731
CHOH951
CHOH953
CHOH1164

site_idAD7
Number of Residues5
Detailsbinding site for residue GOL C 804
ChainResidue
CTHR31
CGLY725
CHOH925
CHOH1027
CHOH1114

site_idAD8
Number of Residues3
Detailsbinding site for residue GOL D 803
ChainResidue
CHOH1080
DARG564
DASP587

site_idAD9
Number of Residues6
Detailsbinding site for residue GOL D 804
ChainResidue
DARG106
DILE107
DALA108
DALA109
DARG724
DHOH949

site_idAE1
Number of Residues5
Detailsbinding site for residue GOL D 805
ChainResidue
DASP121
DPHE135
DGLY165
DLEU181
DHOH1128

site_idAE2
Number of Residues7
Detailsbinding site for residue GOL D 806
ChainResidue
DTHR450
DVAL473
DARG484
DHOH906
DHOH1003
DHOH1223
DHOH1310

site_idAE3
Number of Residues8
Detailsbinding site for residue GOL D 807
ChainResidue
DLYS43
DGLU98
DARG101
DGLN105
DASP115
DHOH901
DHOH996
DHOH1165

site_idAE4
Number of Residues12
Detailsbinding site for Di-peptide LYS A 801 and PRO A 802
ChainResidue
AARG106
AGLU208
AGLU209
AASP211
ATYR527
ASER613
AASN614
ATYR645
ATYR649
AASN691
AHOH1226
AHOH1452

site_idAE5
Number of Residues11
Detailsbinding site for Di-peptide LYS B 801 and PRO B 802
ChainResidue
BARG106
BGLU208
BGLU209
BTYR527
BSER613
BASN614
BTYR645
BTYR649
BASN691
BGOL809
BHOH1341

site_idAE6
Number of Residues14
Detailsbinding site for Di-peptide PRO B 802 and SER B 613
ChainResidue
BTYR527
BTRP612
BASN614
BGLY615
BGLY616
BTYR617
BGLY636
BALA637
BTYR645
BTYR649
BVAL692
BHIS721
BLYS801
BGOL809

site_idAE7
Number of Residues9
Detailsbinding site for Di-peptide LYS C 801 and PRO C 802
ChainResidue
CGLU209
CTYR527
CSER613
CASN614
CTYR645
CTYR649
CASN691
CHOH901
CHOH1252

site_idAE8
Number of Residues10
Detailsbinding site for Di-peptide LYS D 801 and PRO D 802
ChainResidue
DARG106
DGLU208
DGLU209
DTYR527
DSER613
DASN614
DTYR645
DTYR649
DASN691
DHOH1448

site_idAE9
Number of Residues13
Detailsbinding site for Di-peptide PRO D 802 and SER D 613
ChainResidue
DTYR527
DTRP612
DASN614
DGLY615
DGLY616
DTYR617
DGLY636
DALA637
DPRO638
DTYR645
DTYR649
DHIS721
DLYS801

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsACT_SITE: Charge relay system => ECO:0000250|UniProtKB:Q12884, ECO:0000255|PROSITE-ProRule:PRU10084
ChainResidueDetails
CSER613
DSER613
ASER613
BSER613

site_idSWS_FT_FI2
Number of Residues8
DetailsACT_SITE: Charge relay system => ECO:0000250|UniProtKB:Q12884
ChainResidueDetails
CASP689
CHIS721
DASP689
DHIS721
AASP689
AHIS721
BASP689
BHIS721

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:Q12884
ChainResidueDetails
AGLU208
AGLU209
BGLU208
BGLU209
CGLU208
CGLU209
DGLU208
DGLU209

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PDB entries from 2024-06-12

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