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5WYA

Structure of amino acid racemase, 2.65 A

Functional Information from GO Data
ChainGOidnamespacecontents
A0008483molecular_functiontransaminase activity
A0016853molecular_functionisomerase activity
A0030170molecular_functionpyridoxal phosphate binding
A0042802molecular_functionidentical protein binding
B0008483molecular_functiontransaminase activity
B0016853molecular_functionisomerase activity
B0030170molecular_functionpyridoxal phosphate binding
B0042802molecular_functionidentical protein binding
C0008483molecular_functiontransaminase activity
C0016853molecular_functionisomerase activity
C0030170molecular_functionpyridoxal phosphate binding
C0042802molecular_functionidentical protein binding
D0008483molecular_functiontransaminase activity
D0016853molecular_functionisomerase activity
D0030170molecular_functionpyridoxal phosphate binding
D0042802molecular_functionidentical protein binding
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue 7VO A 1001
ChainResidue
AILE24
AVAL252
AASN253
ALYS280
AARG408
AHOH1107
AHOH1117
BTYR84
BLEU307
BPHE308
BTHR309
AALA54
BHOH1124
ASER114
AGLY115
ASER116
ATYR142
AHIS143
AGLU217
AASP250

site_idAC2
Number of Residues6
Detailsbinding site for residue DMS A 1002
ChainResidue
ASER178
AGLU187
ALYS227
APRO229
ATRP363
AHOH1205

site_idAC3
Number of Residues3
Detailsbinding site for residue DMS A 1003
ChainResidue
AGLN133
DLYS162
DGLY164

site_idAC4
Number of Residues6
Detailsbinding site for residue DMS A 1004
ChainResidue
ALYS162
AGLY164
AHOH1207
BARG127
BGLY131
DGLU210

site_idAC5
Number of Residues2
Detailsbinding site for residue DMS A 1005
ChainResidue
ATYR182
AGLU185

site_idAC6
Number of Residues19
Detailsbinding site for residue 7VO B 1001
ChainResidue
ATYR84
ALEU307
APHE308
ATHR309
AHOH1132
BALA54
BSER114
BGLY115
BSER116
BTYR142
BHIS143
BGLU217
BASP250
BVAL252
BASN253
BLYS280
BARG408
BHOH1140
BHOH1156

site_idAC7
Number of Residues4
Detailsbinding site for residue DMS B 1002
ChainResidue
BSER178
BLYS227
BTRP363
BHOH1181

site_idAC8
Number of Residues2
Detailsbinding site for residue DMS B 1003
ChainResidue
BPHE202
BGLU203

site_idAC9
Number of Residues6
Detailsbinding site for residue DMS B 1004
ChainResidue
BGLN133
CLYS162
CGLY164
CHOH2224
DARG127
DARG132

site_idAD1
Number of Residues4
Detailsbinding site for residue DMS C 2001
ChainResidue
BTYR182
BHOH1104
CGLU185
CHOH2165

site_idAD2
Number of Residues18
Detailsbinding site for residue 7VO C 2002
ChainResidue
CALA54
CSER114
CGLY115
CSER116
CTYR142
CHIS143
CGLU217
CASP250
CVAL252
CASN253
CLYS280
CARG408
CHOH2111
CHOH2119
DTYR84
DPHE308
DTHR309
DHOH1127

site_idAD3
Number of Residues1
Detailsbinding site for residue DMS C 2003
ChainResidue
CSER178

site_idAD4
Number of Residues2
Detailsbinding site for residue DMS C 2004
ChainResidue
CPHE202
CHIS243

site_idAD5
Number of Residues20
Detailsbinding site for residue 7VO D 1001
ChainResidue
DGLY115
DSER116
DTYR142
DHIS143
DGLU217
DASP222
DASP250
DVAL252
DASN253
DLYS280
DARG408
DHOH1108
DHOH1112
DHOH1156
CTYR84
CLEU307
CPHE308
CTHR309
DALA54
DSER114

site_idAD6
Number of Residues1
Detailsbinding site for residue DMS D 1002
ChainResidue
DLYS46

Functional Information from PROSITE/UniProt
site_idPS00600
Number of Residues39
DetailsAA_TRANSFER_CLASS_3 Aminotransferases class-III pyridoxal-phosphate attachment site. FAiDEVnq.GLgRtGkmwaiqqfkdiep...DLMsvGKslaSG
ChainResidueDetails
APHE247-GLY285

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P22256
ChainResidueDetails
AGLY115
CTYR142
CASP250
CTHR309
DGLY115
DTYR142
DASP250
DTHR309
ATYR142
AASP250
ATHR309
BGLY115
BTYR142
BASP250
BTHR309
CGLY115

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000250|UniProtKB:P22256
ChainResidueDetails
ALYS280
BLYS280
CLYS280
DLYS280

220113

PDB entries from 2024-05-22

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